Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
39
datasets available to search
ShareScore release 0.9.0
Dataset results
39 results for “environmental tolerance”
Heterogeneous environmental seascape across a biogeographic break influences the thermal physiology and tolerances to ocean acidification in an ecosystem engineer
<p>Dataset for the metabolic rates of limpets under two different pCO2/pH conditions</p> <p>MR are in O2 mg h−1g−1</p>
Data from: The evolution of environmental tolerance and range size: A comparison of geographically restricted and widespread Mimulus
<p>The geographic ranges of closely related species can vary dramatically, yet we do not fully grasp the mechanisms underlying such variation. The niche breadth hypothesis posits that species that have evolved broad environmental tolerances can achieve larger geographic ranges than species with narrow environmental tolerances. In turn, plasticity and genetic variation in ecologically important traits and adaptation to environmentally variable areas can facilitate the evolution of broad environmental tolerance. We used five pairs of western North American monkeyflowers to experimentally test these ideas by quantifying performance across eight temperature regimes. In four species pairs, species with broader thermal tolerances had larger geographic ranges, supporting the niche breadth hypothesis. As predicted, species with broader thermal tolerances also had more within-population genetic variation in thermal reaction norms and experienced greater thermal variation across their geographic ranges than species with narrow thermal tolerances. Species with narrow thermal tolerance may be particularly vulnerable to changing climatic conditions due to a lack of plasticity and insufficient genetic variation to respond to novel selection pressures. Conversely, species experiencing high variation in temperature across their ranges may be buffered against extinction due to climatic changes because they have evolved tolerance to a broad range of temperatures.</p>
Upper thermal tolerance of grassland vipers (Vipera spp.): environmental drivers and local adaptation
<p>The thermal tolerance of ectotherms is a critical factor that influences their distribution, physiology, behaviour, and ultimately survival. Understanding the factors that shape thermal tolerance in these organisms is therefore of great importance for predicting their responses to forecasted climate warming. Here, we investigated the voluntary thermal maximum (VTmax) of nine grassland viper taxa and explored the factors that influence this trait. The small size of these vipers and the open landscape they inhabit renders them particularly vulnerable to overheating and dehydration. We found that the VTmax of grassland vipers is influenced by environmental temperature, precipitation, shortwave flux, and individual body size, rather than by phylogenetic relatedness. Vipers living in colder environments exhibited a higher upper thermal tolerance, contradicting the hypothesis that environmental temperature is positively related to VTmax. Our findings emphasise the importance of considering local to regional adaptation and environmental conditions when studying thermal physiology and the evolution of thermal tolerance in ectotherms.</p>
Data from: The evolution of environmental tolerance and range size: A comparison of geographically restricted and widespread Mimulus
Open the record for dataset details and reuse information.
Physiological and environmental data from: Are you ready for the heat? Plasticity vs adaptation of heat tolerance in three-spined stickleback
<p>Heat waves constitute a challenge for aquatic ectotherms. However, the thermal tolerance of animals and their individual phenotypic plasticity to respond to heat waves may be influenced by thermal history. We tested these hypotheses by comparing the upper thermal tolerance and the individual capacities of three-spined sticklebacks from populations with different thermal histories to respond to heat waves. Two populations originated from thermally polluted nuclear power plant (NPP) habitats, while four locations represented geographically adjacent control areas. To disentangle the genetic adaptation from the phenotypic plastic response, we measured the individual upper thermal tolerance and the responses at molecular level in common garden conditions before and after a laboratory-mimicked heat wave. We found that the sticklebacks exhibit considerable phenotypic plasticity in thermal tolerance since the heat wave increased fish upper thermal tolerance significantly. The individual plasticity to respond to the heat wave was also negatively correlated to initial thermal tolerance. On the other hand, neither the thermal tolerance nor the plastic responses differed between NPP and control sites despite detection of significant but low genome-wide divergence in 10 out of 15 pairwise comparisons. Our results suggest that five decades of nuclear power plant activity with warmer water has not resulted in a detectable evolutionary change in either the upper thermal tolerance or its plasticity in three-spined sticklebacks potentially rendering them sensitive to frequent heat waves.</p>
Data and code from: Experimental evolution of environmental tolerance, acclimation, and physiological plasticity in a randomly fluctuating environment
<p>Environmental tolerance curves, representing absolute fitness against the environment, are an empirical assessment of the fundamental niche, and emerge from the phenotypic plasticity of underlying phenotypic traits. Dynamic plastic responses of these traits can lead to acclimation effects, whereby recent past environments impact current fitness. Theory predicts that higher levels of phenotypic plasticity should evolve in environments that fluctuate more predictably, but there have been few experimental tests of these predictions. Specifically, will still lack experimental evidence for evolution of acclimation effects in response to environmental predictability. Here, we exposed 25 genetically diverse populations of the halotolerant microalgae Dunaliella salina to different constant salinities, or to randomly fluctuating salinities, for over 200 generations. The fluctuating treatments differed in their autocorrelation, which determines the similarity of subsequent values, and thus environmental predictability. We then measured acclimated tolerance surfaces, mapping population growth rate against past (acclimation) and current (assay) environments. We found that experimental mean and variance in salinity caused the evolution of niche position (optimal salinity) and breadth, with respect to not only current but also past (acclimation) salinity. We also detected weak but significant evidence for evolutionary changes in response to environmental predictability, with higher predictability leading notably to an upwards shift in optimal salinities and stronger acclimation effect of past environment on current fitness. We further showed that these responses are related to the evolution of plasticity for intracellular glycerol, the major osmoregulatory mechanism in this species. However the direction of plasticity evolution did not match simple theoretical predictions. Our results underline the need for a more explicit consideration of the dynamics of environmental tolerance and its underlying plastic traits to reach a better understanding of ecology and evolution in fluctuating environments.</p>
Data from: A case for the "Competitive exclusion – tolerance rule" as a general cause of species turnover along environmental gradients
<p><span>Closely-related, ecologically-similar species often segregate their distributions along environmental gradients of time, space, and resources, but previous research suggests diverse underlying causes. Here, we review reciprocal removal studies in nature that experimentally test the role of interactions among species in determining their turnover along environmental gradients. We find consistent evidence for asymmetric exclusion coupled with differences in environmental tolerance causing the segregation of species pairs, where a dominant species excludes a subordinate from benign regions of the gradient, but is unable to tolerate challenging regions to which the subordinate species is adapted. Subordinate species were consistently smaller and performed better in regions of the gradient typically occupied by the dominant species compared to their native distribution. These results extend previous ideas contrasting competitive ability with adaptation to abiotic stress to include a broader diversity of species interactions (intraguild predation, reproductive interference) and environmental gradients, including gradients of biotic challenge. Collectively, these findings suggest that adaptation to environmental challenge compromises performance in antagonistic interactions with ecologically-similar species. The consistency of this pattern across diverse organisms, environments, and biomes suggests generalizable processes structuring the segregation of ecologically-similar species along disparate environmental gradients, a phenomenon that we propose should be named the Competitive exclusion – tolerance rule.</span></p>
Data from: A case for the “Competitive exclusion – tolerance rule” as a general cause of species turnover along environmental gradients
Open the record for dataset details and reuse information.
Data from: Resistance, tolerance and environmental transmission dynamics determine host extinction risk in a load-dependent amphibian disease
Open the record for dataset details and reuse information.
Data and code from: Experimental evolution of environmental tolerance, acclimation, and physiological plasticity in a randomly fluctuating environment
Open the record for dataset details and reuse information.
Physiological and environmental data from: Are you ready for the heat? Plasticity vs adaptation of heat tolerance in three-spined stickleback
Open the record for dataset details and reuse information.
Data from: Identifying genetic variation associated with environmental variation and drought-tolerance phenotypes in ponderosa pine
Open the record for dataset details and reuse information.
Data from : Environmental predictability drives adaptive within- and transgenerational plasticity of heat tolerance across life stages and climatic regions
<p>Although environmental variability and predictability have been proposed as the underlying ecological context in which transgenerational plasticity (<i>TGP</i>) arises, the adaptive significance and interaction with within-generation plasticity (<i>WGP</i>) in such scenarios is still poorly understood. In order to investigate these questions, we considered the tolerance to upper thermal limits of larvae and adults of the desert endemic <i>Drosophila mojavensis </i>adapted to different climatic regions (Desert vs Mediterranean climate). Thermal plasticity was investigated by acclimating parents and offspring at 36°C (versus at 25°C). We then used historical temperature variation data from both regions to perform individual-based simulations by modeling expected components of adaptive plasticity in multiple life stages. Thermal response to ramping heat shocks was more pronounced in larvae, where acclimation treatments in parents and offspring increased their heat-shock performance, while heat knockdown in adults was only increased by offspring acclimation of adults. The relative contribution of <i>WGP</i> and <i>TGP</i> was greater for the population from the more thermally variable Sonoran Desert. Similarly, individual-based simulations of evolving maternal effects indicated that variation in tolerance to upper thermal limits across life stages and climates is expected from its adaptive significance in response to environmental predictability. Our approach offers a new perspective and interpretation of adaptive plasticity, demonstrating that environmental predictability can drive thermal responses across generations and life stages in a scenario with regional climate variability.</p>
Data from: Annual environmental variation influences host tolerance to parasites
When confronted with a parasite or pathogen, hosts can defend themselves by resisting or tolerating the attack. While resistance can be diminished when resources are limited, it is unclear how robust tolerance is to changes in environmental conditions. Here we investigate the sensitivity of tolerance in a single host population living in a highly variable environment. We manipulated the abundance of an invasive parasitic fly, Philornis downsi, in nests of Galápagos mockingbirds (Mimus parvulus) over four field seasons and measured host fitness in response to parasitism. Mockingbird tolerance to P. downsi varied significantly among years and decreased when rainfall was limited. Video observations indicate that parental provisioning of nestlings appears key to tolerance: in drought years, mockingbirds likely do not have sufficient resources to compensate for the effects of P. downsi. These results indicate that host tolerance is a labile trait and suggest that environmental variation plays a major role in mediating the consequences of host-parasite interactions.
Data from: Parental environmental effects due to contrasting watering adapt competitive ability, but not drought tolerance, in offspring of a semi-arid annual Brassicaceae
1. Parental effects (PE) can be adaptive and improve offspring performance when parents and offspring experience similar environmental conditions. However, it is unknown whether adaptive PE exist also in habitats where such similarity is unlikely due to strong temporal variation. In particular, we do not know whether PE can adapt offspring to fluctuating levels of neighbour competition in such habitats. 2. Here, we tested for adaptive PE in terms of two key environmental factors in a semi-arid annual system, competition and drought. While rainfall was stochastic in the study site, the competitive environment was partly predictable: higher plant densities followed after favourable (rainy) years due to high seed production. We therefore expected PE to adapt the offspring's competitive ability to these (predictable) fluctuations in plant densities, rather than to adapt the offspring's drought tolerance to the (unpredictable) occurrence of intensified drought. 3. Parental plants of Biscutella didyma, an annual Brassicaceae, were raised under favourable watering and under drought conditions. Offspring performance was then tested under a full-factorial combination of two neighbour regimes and six watering levels in the glasshouse. 4. Offspring of parents grown under favourable conditions were stronger competitors. This was associated with a small shift in phenology but not with higher parental seed provisioning. Offspring from parents grown under drought showed no improved drought tolerance. Moreover, no PE were detectable when offspring were grown without neighbours. 5. Our results suggest a novel path of adaptive PE: higher competitive ability was induced in offspring that were more likely to experience high neighbour densities. Together with the lack of adaptive PE towards drought tolerance, this emphasizes that a correlation between parental and offspring environment is crucial for adaptive PE to evolve. Our results also call for the inclusion of competitive effects in future PE studies. 6. Synthesis. This study demonstrates the important role of adaptive PE for plant fitness (regarding competition) but also their limits (regarding drought) in temporally variable environments, based on the predictability of the respective environmental factor.
Data from: Temporally autocorrelated environmental fluctuations inhibit the evolution of stress tolerance
As global environmental conditions continue to change at an unprecedented rate many species will experience increases in natural and anthropogenic stress. Generally speaking, selection is expected to favor adaptations that reduce the negative impact of environmental stress (i.e., stress tolerance). However, natural environmental variables typically fluctuate, exhibiting various degrees of temporal autocorrelation, known as environmental 'colors,' which may complicate evolutionary responses to stress. Here we combine experiments and theory to show that temporal environmental autocorrelation can determine long-term evolutionary responses to stress, without affecting the total amount of stress experienced over time. Experimental evolution of RNA virus lineages in differing environmental autocorrelation treatments agreed closely with predictions from our theoretical models that stress tolerance is favored in less autocorrelated (whiter) environments but disfavored in more autocorrelated ('redder)ned' environments. This is explained by an interaction between environmental color autocorrelation and a phenotypic tradeoff between stress tolerance and reproductive ability. The degree to which environmental color autocorrelation influences evolutionary trajectories depends on the shape of this tradeoff as well as the relative level of tolerance exhibited by novel mutants. These results suggest that long-term evolutionary dynamics depend not only on the overall strength of selection, but also on the way that selection is distributed over time.
Multiple paths to cold tolerance: the role of environmental cues, morphological traits and the circadian clock gene vrille
<p><strong>Background</strong>: Tracing the association between insect cold tolerance and latitudinally and locally varying environmental conditions, as well as key morphological traits and molecular mechanisms, is essential for understanding the processes involved in adaptation. We explored these issues in two closely-related species, Drosophila montana and Drosophila flavomontana, originating from diverse climatic locations across several latitudes on the coastal and mountainous regions of North America. We also investigated the association between sequence variation in one of the key circadian clock genes, vrille, and cold tolerance in both species. Finally, we studied the impact of vrille on fly cold tolerance and cold acclimation ability by silencing it with RNA interference in D. montana.</p> <p><strong>Results</strong>: We performed a principal component analysis (PCA) on variables representing bioclimatic conditions on the study sites and used latitude as a proxy of photoperiod. PC1 separated the mountainous continental sites from the coastal ones based on temperature variability and precipitation, while PC2 arranged the sites based on summer and annual mean temperatures. Cold tolerance tests showed D. montana to be more cold-tolerant than D. flavomontana and chill coma resistance (CT<sub>min</sub>) of this species showed an association with PC2. Chill coma recovery time (CCRT) of both species improved towards northern latitudes, and in D. flavomontana this trait was also associated with PC1. D. flavomontana flies were darkest in the coast and in the northern mountainous populations, but coloration showed no linkage with cold tolerance. Body size decreased towards cold environments in both species, but only within D. montana populations largest flies showed fastest recovery from cold. Finally, both the sequence analysis and RNAi study on vrille suggested this gene to play an essential role in D. montana cold resistance and acclimation, but not in recovery time.</p> <p><strong>Conclusions</strong>: Our study demonstrates the complexity of insect cold tolerance and emphasizes the need to trace its association with multiple environmental variables and morphological traits to identify potential agents of natural selection. It also shows that a circadian clock gene vrille is essential both for short- and long-term cold acclimation, potentially elucidating the connection between circadian clock system and cold tolerance.</p> <p> </p>
Heterogeneous environmental seascape across a biogeographic brake influences the thermal physiology and tolerances to ocean acidification in an ecosystem
<p><b>Aim:</b> Understanding how spatio-temporal environmental variability influences stress tolerance, local adaptation, and phenotypic variation among populations is a key challenge for evolutionary ecology and climate change biology. Coastal biogeographic breaks are natural laboratories to explore this fundamental research question due to the contrasting environmental conditions experienced by natural populations across these regions.</p> <p><b>Location:</b> In the South East Pacific (SEP) coast a major break (30º-32ºS) is characterized by extreme natural variability in sea surface temperature (SST) and carbonate chemistry parameters related to temporal and spatial dynamics in upwelling events. Calcifying organisms inhibiting this zone are exposed to marked fluctuations and clines in SST that together with naturally acidified waters can impact their metabolism, calcification and fitness, making them particularly prone to the effects of climate change (e.g., ocean acidification, OA). We investigated to what extent the spatial and temporal environmental variability (in SST and seawater carbonate conditions) that characterizes the biogeographic break in the SEP, influences intra-specific differences in the thermal ecology and the tolerances to OA of the limpet <i>Scurria araucana</i>.</p> <p><b>Methods: </b>During two years, we conducted field surveys of limpet populations at sites across the SEP break (27ºS, 30ºS and 32ºS). We collected individuals from each population to test for geographic differences in morphometric (e.g., total buoyancy weight, shell length) and physiological (e.g., oxygen consumption rate, cardiac activity, and thermal performance curves; TPC) responses to local environmental conditions (Tº and pH/pCO<sub>2</sub>) and to simulated OA scenarios.</p> <p><b>Results:</b> Populations of <i>S. Araucana </i>exhibit high tolerance to OA with no signal of geographic influence on this attribute. However, inter-population differences in thermal physiology (metabolic rates and performances) where found across the biogeographic break in the SEP coast. Limpets from the central part of the break (30ºS) exhibit higher thermal performance compared to limpets from populations at both sides of the break.</p> <p><b>Main conclusions:</b> Variation in SST has a greater effect shaping inter-population differences in thermal physiology of the limpet <i>S. araucana</i>. These physiological differences<i> </i>are aligned the thermal heterogenous seascape along the biogeographic break in the SEP. Contrary, temporal and spatial variation in seawater carbonate conditions does not influence inter-population differences in phenotypic response populations, but an overall high tolerance to OA.</p>
Data from: Roads to isolation: similar genomic history patterns in two species of freshwater crabs with contrasting environmental tolerances and range sizes
Freshwater species often show high levels of endemism and risk of extinction owing to their limited dispersal abilities. This is exemplified by the stenotopic freshwater crab, Johora singaporensis which is one of the world's 100 most threatened species, and currently inhabits less than 0.01 km2 of five low order hill streams within the highly urbanized island city‐state of Singapore. We compared populations of J. singaporensis with that of the non‐threatened, widespread, abundant, and eurytopic freshwater crab, Parathelphusa maculata, and found surprisingly high congruence between their population genomic histories. Based on 2,617 and 2,470 genome‐wide SNPs mined via the double‐digest restriction‐associated DNA sequencing method for ~90 individuals of J. singaporensis and P. maculata, respectively, the populations are strongly isolated (FST = 0.146–0.371), have low genetic diversity for both species (also for COI), and show signatures of recent genetic bottlenecks. The most genetically isolated populations for both species are separated from other populations by one of the oldest roads in Singapore. These results suggest that anthropogenic developments may have impacted stream‐dependent species in a uniform manner, regardless of ubiquity, habitat preference, or dispersal modes of the species. While signs of inbreeding were not detected for the critically endangered species, the genetic distinctiveness and low diversity of the populations call for genetic rescue and connecting corridors between the remaining fragments of the natural habitat.
Schoenoplectus salinity tolerance and regional environmental records
Open the record for dataset details and reuse information.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.