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27 results for “evolutionary experiments”
Data from: Designing eco-evolutionary experiments for restoration projects: Opportunities and constraints revealed during Stickleback introductions
<p>Eco-evolutionary experiments are typically conducted in semi-unnatural controlled settings, such as mesocosms; yet inferences about how evolution and ecology interact in the real world would surely benefit from experiments in natural uncontrolled settings. Opportunities for such experiments are rare but do arise in the context of restoration ecology – where different "types" of a given species can be introduced into different "replicate" locations. Designing such experiments requires wrestling with consequential questions. Q1. Which specific "types" of a focal species should be introduced to the restoration location? Q2. How many sources of each type should be used – and should they be mixed together? Q3. Which specific source populations should be used? Q4. Which type or population(s) should be introduced into which restoration sites? We recently grappled with these questions when designing an eco-evolutionary experiment with threespine stickleback (<em>Gasterosteus aculeatus</em>) introduced into nine small lakes and ponds on the Kenai Peninsula in Alaska that required restoration. After considering the options at length, we decided to use benthic versus limnetic ecotypes (Q1) from a mixture of four source populations of each ecotype (Q2) selected based on trophic morphology (Q3), and introduced into restoration lakes in a paired design (Q4). We hope that the present paper outlining the alternatives and resulting choices will provide the rationales clear for future studies leveraging our experiment, while also proving useful for investigators considering similar experiments in the future.</p>
Evolutionary footprints of cold adaptation in arctic-alpine Cochlearia (Brassicaceae) – evidence from freezing experiments and electrolyte leakage
<p><span>As </span><span>global warming progresses, plants may be forced to adapt to drastically changing environmental conditions. Arctic-alpine plants have been among the first to experience the effects of climate change. As a result, cold acclimation and freezing tolerance may become increasingly crucial for the survival as winter warming events and earlier snowmelt will cause increased exposure to occasional frost. The tribe </span><span>Cochlearieae in the mustard family (Brassicaceae) </span><span>offers an instructive system for studying cold adaptation in evolutionary terms, as the two sister genera </span><em><span>Ionopsidium</span></em> <span>and </span><em><span>Cochlearia</span></em> <span>are distributed among different ecological habitats throughout the European continent and the far north into circumarctic regions. By applying an electrolyte leakage assay to leaves obtained from plants cultivated under controlled temperature regimes in growth chambers, the freezing tolerance of different </span><em><span>Ionopsidium</span></em> <span>and </span><em><span>Cochlearia</span></em> <span>species was assessed measuring lethal freezing temperature values (</span><em><span>LT</span><span>50</span></em> <span>and </span><em><span>LT</span><span>100</span></em><span>), thereby allowing for a comparison across different species and accessions in their responses to cold. We hypothesized that, owing to varying selection pressures, geographically distant species would differ in freezing tolerance. Despite </span><em><span>Ionopsidium</span></em> <span>occurring under warm and dry Mediterranean conditions and </span><em><span>Cochlearia</span></em> <span>species distributed often at cold habitats, all accessions exhibited similar cold responses. The results may indicate that physiological adaptations of primary metabolic pathways to different stressors, such as salinity and drought, may confer an additional tolerance to cold; this is because all these stressors induce osmotic challenges. </span></p>
Evolutionary footprints of cold adaptation in arctic-alpine Cochlearia (Brassicaceae) – evidence from freezing experiments and electrolyte leakage
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Data from: Designing eco-evolutionary experiments for restoration projects: Opportunities and constraints revealed during Stickleback introductions
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Photoprotective leaf pigments and chlorophyll fluorescence measurements during a greenhouse drought experiment: An evolutionary perspective on functional diversity in co-occuring willow(salix) species
Thirteen willow (Salix) species occur in southeastern Minnesota and often co-occur within the same wetlands. This high local diversity is challenging to explain since closely related species are often functionally similar and density-dependent interactions such as competition and susceptibility to pests and pathogens should limit their co-occurrence. However, if willow species are partitioning resources, or if they are phylogenetically structured so that closely related species rarely co-occur, then the impact of these density-dependent processes could be reduced. In this study, I examined the role of niche partitioning in maintaining local willow diversity by comparing species physiology in a greenhouse.
Gas exchange, dieback, leaf water potential and chlorophyll content during a greenhouse drought experiment: An evolutionary perspective on functional diversity in co-occuring willow(salix) species
Thirteen willow (Salix) species occur in southeastern Minnesota and often co-occur within the same wetlands. This high local diversity is challenging to explain since closely related species are often functionally similar and density-dependent interactions such as competition and susceptibility to pests and pathogens should limit their co-occurrence. However, if willow species are partitioning resources, or if they are phylogenetically structured so that closely related species rarely co-occur, then the impact of these density-dependent processes could be reduced. In this study, I examined the role of niche partitioning in maintaining local willow diversity by comparing species physiology in a greenhouse.
Data for: Eco-evolutionary experience and behavioural innovation
<p>This dataset contains documented cases of behavioural change of native species in response to non-native species. We provide information on the source publication, the extend of the behavioural change of the native species (rate change, object change, technical change) and the population trend after the onset of the interaction. Furthermore, we estimated the eco-evolutionary experience the native species has with the non-native species by assessing if it is from a new ecological guild or shows traits unknown to the native species.</p>
Data from: Severity of impacts of an introduced species corresponds with regional eco-evolutionary experience
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Data for: Eco-evolutionary experience and behavioural innovation
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Data from: A Drosophila laboratory evolution experiment points to low evolutionary potential under increased temperatures likely to be experienced in the future
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Data from: A common-garden experiment to quantify evolutionary processes in copepods: the case of emamectin benzoate resistance in the parasitic sea louse Lepeophtheirus salmonis
Background:The development of pesticide resistance represents a global challenge to food production. Specifically for the Atlantic salmon aquaculture industry, parasitic sea lice and their developing resistance to delousing chemicals is challenging production. In this study, seventeen full sibling families, established from three strains of Lepeophtheirus salmonis displaying differing backgrounds in emamectin benzoate (EB) tolerance were produced and quantitatively compared under a common-garden experimental design. Lice surviving to the preadult stage were then exposed to EB and finally identified through the application of DNA parentage testing. Results: With the exception of two families (19 and 29%), survival from the infectious copepod to preadult stage was very similar among families (40-50%). In contrast, very large differences in survival following EB exposure were observed among the families (7.9-74%). Family survival post EB exposure was consistent with the EB tolerance characteristics of the strains from which they were established and no negative effect on infection success were detected in association with increased EB tolerance. Two of the lice families that displayed reduced sensitivity to EB were established from a commercial farm that had previously used this chemical. This demonstrates that resistant alleles were present on this farm even though the farm had not reported treatment failure. Conclusions: To our knowledge, this represents the first study where families of any multi-cellular parasite have been established and compared in performance under communal rearing conditions in a common-garden experiment. The system performed in a predictable manner and permitted, for the first time, elucidation of quantitative traits among sea lice families. While this experiment concentrated on, and provided a unique insight into EB sensitivity among lice families, the experimental design represents a novel methodology to experimentally address both resistance development and other evolutionary questions in parasitic copepods.
Data from: Ecological and evolutionary dynamics of coexisting lineages during a long-term experiment with E. coli
Closely related organisms usually occupy similar ecological niches, leading to intense competition and even extinction. Such competition also can promote rapid phenotypic evolution and ecological divergence. This process may end with the stable occupation of distinct niches or, alternatively, may entail repeated bouts of evolution. Here we examine two Escherichia coli lineages, called L and S, that coexisted for more than 30,000 generations after diverging from a common ancestor. Both lineages underwent sustained phenotypic evolution based on global transcription and resource utilization profiles, with L seeming to encroach over time on the catabolic profile of S. Reciprocal invasion experiments with L and S clones from the same or different generations revealed evolutionary changes in their interaction, including an asymmetry that confirmed the encroachment by L on the niche of the S lineage. In general, L and S clones from the same generation showed negative frequency-dependent effects, consistent with stable coexistence. However, L clones could invade S clones from both earlier and later generations, whereas S clones could invade only L clones from earlier generations. In this system, the long-term coexistence of competing lineages evidently depended on successive rounds of evolution, rather than on initial divergence followed by a static equilibrium.
Data from: A replicated climate change field experiment reveals rapid evolutionary response in an ecologically important soil invertebrate
Whether species can respond evolutionarily to current climate change is crucial for the persistence of many species. Yet, very few studies have examined genetic responses to climate change in manipulated experiments carried out in natural field conditions. We examined the evolutionary response to climate change in a common annelid worm using a controlled replicated experiment where climatic conditions were manipulated in a natural setting. Analyzing the transcribed genome of 15 local populations, we found that about 12% of the genetic polymorphisms exhibit differences in allele frequencies associated to changes in soil temperature and soil moisture. This shows an evolutionary response to realistic climate change happening over short-time scale, and calls for incorporating evolution into models predicting future response of species to climate change. It also shows that designed climate change experiments coupled with genome sequencing offer great potential to test for the occurrence (or lack) of an evolutionary response.
Genome-wide molecular phylogenetic analyses and mating experiments which reveal the evolutionary history and an intermediate stage of speciation of a giant water bug
<p>The intermediate stages of speciation are important for understanding the processes involved in the creation of biodiversity, and also comprise a number of interesting phenomena. However, difficulties are associated with dividing clear speciation stages because speciation is a continuous process. Therefore, the elucidation of speciation is an interesting and important task in evolutionary biology. We herein present an example of a species in an intermediate stage of speciation using the giant water bug <i>Appasus japonicus</i> (Heteroptera, Belostomatidae) that was investigated using mating experiments and phylogenetic analyses of the mtDNA <i>COI</i> (658 bp) and 16S rRNA (435 bp) regions, and nDNA SSR (13 loci) and its genome-wide SNPs (11,241 SNPs). The results of our phylogenetic analyses based on their mtDNA dataset and the genome-wide SNPs dataset strongly supported the paraphyly of the Japanese populations. Therefore, it is suggested that their ancestral lineage which being distributed in the Japanese Archipelago subsequently migrated to the Eurasian Continent (i.e., "back-dispersal" occurred). Furthermore, the results of the mating experiments suggested that among <i>A. japonicus</i>, even between closely related lineages, pre-mating reproductive isolation has been established by the differentiation of copulatory organ morphologies. In contrast, pre-mating reproductive isolation is not established in the absence of the differentiation of copulatory organ morphologies, even if genetic differentiation is prominent. These results suggested that their phylogenetic distance does not predict pre-mating reproductive isolation. Furthermore, in the present study, we present a clear example of pre-mating reproductive isolation driving speciation between closely related lineages.</p>
Data from: A replicated climate change field experiment reveals rapid evolutionary response in an ecologically important soil invertebrate
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Data from: A common-garden experiment to quantify evolutionary processes in copepods: the case of emamectin benzoate resistance in the parasitic sea louse Lepeophtheirus salmonis
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Data from: Ecological and evolutionary dynamics of coexisting lineages during a long-term experiment with E. coli
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Genome-wide molecular phylogenetic analyses and mating experiments which reveal the evolutionary history and an intermediate stage of speciation of a giant water bug
Open the record for dataset details and reuse information.
Data from: A field experiment demonstrating plant life-history evolution and its eco-evolutionary feedback to seed predator populations
The extent to which evolutionary change occurs in a predictable manner under field conditions and how evolutionary changes feed back to influence ecological dynamics are fundamental, yet unresolved, questions. To address these issues, we established eight replicate populations of native common evening primrose (Oenothera biennis). Each population was planted with 18 genotypes in identical frequency. By tracking genotype frequencies with microsatellite DNA markers over the subsequent three years (up to three generations, ≈5,000 genotyped plants), we show rapid and consistent evolution of two heritable plant life-history traits (shorter life span and later flowering time). This rapid evolution was only partially the result of differential seed production; genotypic variation in seed germination also contributed to the observed evolutionary response. Since evening primrose genotypes exhibited heritable variation for resistance to insect herbivores, which was related to flowering time, we predicted that evolutionary changes in genotype frequencies would feed back to influence populations of a seed predator moth that specializes on O. biennis. By the conclusion of the experiment, variation in the genotypic composition among our eight replicate field populations was highly predictive of moth abundance. These results demonstrate how rapid evolution in field populations of a native plant can influence ecological interactions.
Data from: Evolutionary changes in plant tolerance against herbivory through a resurrection experiment
Both theoretical and empirical works have highlighted the difference in the evolutionary implications of host resistance and tolerance against their enemies. However, it has been difficult to show evolutionary changes in host defences in natural populations; thus, evaluating theoretical predictions of simultaneous evolution of defences remains a challenge. We studied the evolutionary changes in traits related to resistance and tolerance against herbivory in a natural plant population using seeds from two collections made in a period of 20 years. In a common garden experiment, we compared defensive traits of ancestral (1987) and descendant (2007) subpopulations of the annual plant Datura stramonium that shows genetic variation for tolerance and to which the specialist herbivore Lema daturaphila is locally adapted. We also examined the effects of different plant genotypes on the herbivore for testing the plant genetic variation in resistance. Based on the response to the contemporary herbivore populations, results revealed a nonsignificant response in plant resistance traits (herbivore consumption, foliar trichomes and tropane alkaloids), but a significant one in tolerance. The survival of herbivores in laboratory experiments depended on the plant genotype, which suggests genetic variation in plant resistance. Although we cannot identify the selective agent for the change nor exclude genetic drift, the results are consistent with the expectation that when resistance fails to control herbivory, tolerance should play a more important role in the evolution of the interaction.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.