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15
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ShareScore release 0.7.1
Dataset results
15 results for “frankia”
Soil C, N, P, and Frankia nifD-K RFLP genotypes distribution from Alnus tenuifolia nodules in early and late succession 2005
This dataset contains genetic characterizations of Frankia inhabiting Alnus tenuifolia nodules in early and late succession sites in the Bonanza Creek Experimental Forest (BCEF). Characterizations were done using PCR-RFLP on the nifD-K spacer region of the Frankia genome. The position of each plant and each nodule were mapped in order to examine spatial patterns in Frankia distribution within sites. Soil chemistry data, including C, N, P, and pH, were also collected from mineral and organic layers.
N-fixation rate and leaf N content in two species of Alnus and their relationship to diversity of symbiotic Frankia
This study investigated patterns of nitrogen (N) fixation rates, leaf N content, and geographic diversity in the N-fixing bacterium Frankia occurring in symbiosis with Alnus incana ssp. tenuifolia and A. viridis ssp. fruticosa in early and late successional habitats on the Tanana river floodplain and surrounding uplands in the Bonanza Creek Experimental Forest. Frankia diversity was estimated via polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) of the nifD-K spacer region, a non-coding region in the nitrogenase-encoding operon. Specific N-fixation rate was measured with a 15N2 uptake assay and leaf N content via mass spectrometry. Additional parameters measured were soil temperature and moisture, leaf del 15N, and specific leaf area.
Nitrogen fixation, nodule respiration, and nodule Frankia identiy in alder growing in control, N-fertilized, and P-fertilized stands.
This data file includes data of simultaneous measurements of nitrogen fixation and nodule respiration in nodule clusters where Frankia identities were determined using molecular techniques from Alnus tenuifolia growing in replicate control, N-fertilized, and P-fertilized mid-successional stands along the Tanana River.
Gene profiling during symbiosis between the actinorhizal tree Alnus glutinosa and the actinobacteria Frankia alni ACN14
GEO Series GSE24153. Alnus glutinosa. 15 samples. Type: Expression profiling by array.
Gene profiling during symbiosis between the actinorhizal tree Casuarina glauca and the actinobacteria Frankia CcI3
GEO Series GSE24158. Casuarina glauca. 15 samples. Type: Expression profiling by array.
Transcriptomes of Frankia sp. strain CcI3 in growth transitions
GEO Series GSE30680. Frankia casuarinae. 3 samples. Type: Expression profiling by high throughput sequencing.
Expression data of Frankia sp. strain CcI6 under salt stress, osmotic stress, and control conditions (no salt/osmotic stress)
GEO Series GSE95217. Frankia sp. CcI6. 6 samples. Type: Expression profiling by high throughput sequencing.
Comparison of transcriptome between free-living and symbiotic cells of Frankia alni ACN14a
GEO Series GSE18190. Frankia alni ACN14a. 21 samples. Type: Expression profiling by array.
Archaea and Frankia gene family alignments and associated scripts
<p>Biological datasets (gene family alignments from Archaea and Frankia) associated with the manuscript titled "A systematic assessment of phylogenomic approaches for microbial species tree reconstruction" by S. Weiner, Y. Feng, J. P. Gogarten, and M. S. Bansal. A preprint of the manuscript is available from: <span>https://doi.org/10.1101/2024.11.20.624597</span></p>
Expression data of Frankia CcI3 in plant root nodules under salt stress
GEO Series GSE60938. Frankia casuarinae. 6 samples. Type: Expression profiling by high throughput sequencing.
Gene profiling during symbiosis between the actinorhizal tree Casuarina glauca and the actinobacteria Frankia CcI3 after treatment with 1-naphtoxy acetic acid, an auxin influx inhibitor.
GEO Series GSE55582. Casuarina glauca. 4 samples. Type: Expression profiling by array.
Transcriptome of Frankia in nitrogen-fixing root-nodule symbiosis with Datisca glomerata
GEO Series GSE61377. Frankia. 1 samples. Type: Expression profiling by high throughput sequencing.
Expression data of three Frankia strains under nitrogen-replete and nitrogen-defiecent conditions
GEO Series GSE64517. Pseudofrankia inefficax; Parafrankia sp. EUN1f; Parafrankia sp. EAN1pec. 18 samples. Type: Expression profiling by high throughput sequencing.
Expression of Frankia inefficax EuI1c under selenite stress
GEO Series GSE176380. Pseudofrankia inefficax. 10 samples. Type: Expression profiling by high throughput sequencing.
Expression data of Frankia inefficax strain EuI1c under biphenyl stress
GEO Series GSE178353. Pseudofrankia inefficax. 9 samples. Type: Expression profiling by high throughput sequencing.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.