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35 results for “gammaherpesvirus”
Data from: Bats, primates, and the evolutionary origins and diversification of mammalian gammaherpesviruses
Gammaherpesviruses (γHVs) are generally considered host specific and to have codiverged with their hosts over millions of years. This tenet is challenged here by broad-scale phylogenetic analysis of two viral genes using the largest sample of mammalian γHVs to date, integrating for the first time bat γHV sequences available from public repositories and newly generated viral sequences from two vampire bat species (Desmodus rotundus and Diphylla ecaudata). Bat and primate viruses frequently represented deep branches within the supported phylogenies and clustered among viruses from distantly related mammalian taxa. Following evolutionary scenario testing, we determined the number of host-switching and cospeciation events. Cross-species transmissions have occurred much more frequently than previously estimated, and most of the transmissions were attributable to bats and primates. We conclude that the evolution of the Gammaherpesvirinae subfamily has been driven by both cross-species transmissions and subsequent cospeciation within specific viral lineages and that the bat and primate orders may have potentially acted as superspreaders to other mammalian taxa throughout evolutionary history.
Data from: Bats, primates, and the evolutionary origins and diversification of mammalian gammaherpesviruses
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Small RNA sequencing of NIH 3T12 cells infected by murine gammaherpesvirus
GEO Series GSE36639. Mus musculus. 5 samples. Type: Non-coding RNA profiling by high throughput sequencing.
B cell-intrinsic STAT3-mediated interferon suppression during murine gammaherpesvirus 68 infection revealed through in vivo competition model.[ccbr1030_Stat3_2019]
GEO Series GSE227736. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide transcript structure resolution in murine gammaherpesvirus 68: HE 2.1 deepCAGE
GEO Series GSE131197. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68
GEO Series GSE22938. Mus musculus. 4 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Tiled Array Experiment of Murine Gammaherpesvirus 68 Transcripts In Newly Infected Fibroblasts
GEO Series GSE35863. Mus musculus; Murid gammaherpesvirus 4. 8 samples. Type: Expression profiling by genome tiling array.
Brd/BET Proteins Influence the Genome-Wide Localization of the Kaposi’s Sarcoma-associated Herpesvirus and Murine Gammaherpesvirus Major Latency Proteins [human array]
GEO Series GSE153601. Homo sapiens. 20 samples. Type: Expression profiling by array.
Targeting pyruvate metabolism generates distinct CD8+ T cell responses to gammaherpesvirus and B lymphoma
GEO Series GSE279041. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Isolation and characterization of a novel gammaherpesvirus from a microbat cell line
GEO Series GSE76756. Myotis velifer; Bat gammaherpesvirus 8. 1 samples. Type: Expression profiling by high throughput sequencing.
Barrier-to-autointegration Factor 1 (BAF) Promotes Gammaherpesvirus Reactivation from Latency
GEO Series GSE200781. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Brd/BET Proteins Influence the Genome-Wide Localization of the Kaposi’s Sarcoma-associated Herpesvirus and Murine Gammaherpesvirus Major Latency Proteins
GEO Series GSE153244. Mus musculus; Homo sapiens. 98 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing.
Comparative Analysis of Gammaherpesvirus Circular RNA
GEO Series GSE124711. Homo sapiens; Mus musculus; Macaca mulatta; Murid herpesvirus 68; Macacine gammaherpesvirus 4; Human gammaherpesvirus 8. 10 samples. Type: Other.
Genome-wide transcript structure resolution in murine gammaherpesvirus 68: 3T12 deepCAGE
GEO Series GSE117644. Mus musculus. 7 samples. Type: Expression profiling by high throughput sequencing.
Nelfinavir for the Treatment of Gammaherpesvirus-Related Tumors
ClinicalTrials.gov study NCT02080416. IPD Sharing: NO. Countries: 1. Publications: 0.
RNAseq analysis of B cells inducible for murine gammaherpesvirus 68 reactivation
GEO Series GSE94238. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Tiled Array Experiment of Murine Gammaherpesvirus 68 Transcripts Upon TPA-Stimulated Reactivation From Latency
GEO Series GSE35865. Mus musculus; Murid gammaherpesvirus 4. 4 samples. Type: Expression profiling by genome tiling array.
Genome-wide transcript structure resolution reveals novel features of gammaherpesvirus transcription and yields an extensively revised murine gammaherpesvirus 68 genome annotation
GEO Series GSE117651. Mus musculus. 19 samples. Type: Expression profiling by high throughput sequencing.
Tiled Microarray Identification of Novel Viral Transcript Structures and Distinct Transcriptional Profiles During Two Modes of Productive Murine Gammaherpesvirus 68 Infection.
GEO Series GSE35866. Mus musculus; Murid gammaherpesvirus 4. 12 samples. Type: Expression profiling by genome tiling array.
Brd/BET Proteins Influence the Genome-Wide Localization of the Kaposi’s Sarcoma-associated Herpesvirus and Murine Gammaherpesvirus Major Latency Proteins [mouse array]
GEO Series GSE153236. Mus musculus. 40 samples. Type: Expression profiling by array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.