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ShareScore release 0.9.0
Dataset results
12 results for “gene co-expression modules”
Robustness of organ morphology is associated with modules of co-expressed genes related to plant cell wall
<p>Reproducibility in organ size and shape is a fundamental trait of living organisms. The mechanisms underlying such robustness remain, however, to be elucidated. In the manuscript <a href="https://www.biorxiv.org/content/10.1101/2022.04.26.489498v1"><strong>"Robustness of organ morphology is associated with modules of co-expressed genes related to plant cell wall", </strong>doi: https://doi.org/10.1101/2022.04.26.489498</a>, we took the sepal of Arabidopsis as a model, and we investigated whether variability of gene expression plays a role in variation of organ morphology.</p> <p>To address this question, we produced a dataset composed of both transcriptomic and morphological information obtained from 27 individual sepals from wild-type plants.</p> <p>This repository contains the raw confocal image of 30 sepals used as starting point for the analysis, as well as their extracted contours as binary images. These images were used to recover the 3D shape of the sepals.</p> <p>The 30 abaxial sepals were collected at early stage 11, from three different Col-0 wild-type plants, labeled D, E and F, grown simultaneously in experimentally controlled standard conditions. Each sepal was imaged under a confocal microscope using autofluorescence. Immediately following imaging, the sepal was frozen in liquid nitrogen for RNA extraction, on which an RNA-seq analysis was performed.</p> <p><strong>Related informations :</strong></p> <ul> <li>The repository of the numerical tools used for 3D shape extraction as well as the results of geometrical measurements is <a href="http://forge.cbp.ens-lyon.fr/redmine/projects/florivar">here</a>.</li> <li>The repository of RNA-Seq analysis results of these same sepals is here.</li> <li>And the analysis tools used to relate geometrical measurements to RNA-seq data are here.</li> </ul>
Blockade of LAG3 and PD1 leads to co-expression of cytotoxic and exhaustion gene modules in CD8+ T cells to promote antitumor immunity
<p>This is the data necessary to reproduce the figures from "<em>Blockade of LAG3 and PD1 leads to co-expression of cytotoxic and exhaustion gene modules in CD8+ T cells to promote antitumor immunity</em>" by Cillo et al.</p>
Data from: Gene co-expression modules underlying polymorphic and monomorphic zooids in the colonial hydrozoan, Hydractinia symbiolongicarpus
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Transcriptome of iPSC-derived neuronal cells reveals a module of co-expressed genes consistently associated with autism spectrum disorder
GEO Series GSE142670. Homo sapiens. 52 samples. Type: Expression profiling by high throughput sequencing.
Doxorubicin resistance involves modulation of interferon signaling, transcriptional bursting, and gene co-expression patterns of U-ISGF3-related genes
GEO Series GSE275330. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
Blockade of LAG-3 and PD-1 leads to co-expression of cytotoxic and exhaustion gene modules in CD8+ T cells to promote antitumor immunity
GEO Series GSE225063. Homo sapiens. 256 samples. Type: Expression profiling by high throughput sequencing; Other.
Three TF Gene Co-expression Modules are involved in Pressure-Overload Cardiac Hypertrophy in Male Mice (mRNA)
GEO Series GSE99458. Mus musculus. 10 samples. Type: Expression profiling by array.
Three TF Gene Co-expression Modules are involved in Pressure-Overload Cardiac Hypertrophy in Male Mice (microRNA)
GEO Series GSE99459. Mus musculus. 20 samples. Type: Non-coding RNA profiling by array.
Identification of Potential Functional Modules and Diagnostic Genes for Crohn's Disease Based on Weighted Gene Co-expression Network Analysis and LASSO Algorithm
<p>Table S1 651 DEGs between CD and control samples</p> <p>Table S2 381 ME turquoise module genes</p> <p>Table S3 Coefficients of the eight module genes analyzed by LASSO regression</p>
Three TF Gene Co-expression Modules are involved in Pressure-Overload Cardiac Hypertrophy in Male Mice
GEO Series GSE99460. Mus musculus. 30 samples. Type: Expression profiling by array; Non-coding RNA profiling by array.
Disease-specific modules and potential hub genes for intervention strategies: A co-expression network-based approach for Plasmodium falciparum clinical isolates
GEO Series GSE64931. Plasmodium falciparum. 21 samples. Type: Expression profiling by array.
Integration between MCL1 gene co-expression module and the Revised International Staging System enables precise prognostication and prediction of response to proteasome inhibitor-based therapy in indi
GEO Series GSE190042. Homo sapiens. 93 samples. Type: Expression profiling by array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.