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102 results for “gene isoform”
The spatial landscape of gene expression isoforms in tissue sections
<p><strong>This upload provides raw in situ sequencing (ISS) data used to validate Spatial Isoform Transcriptomics (SiT), as well as R scripts required for SiT analysis.</strong></p> <p><strong>GenePlots.zip and Reads.zip are ISS data </strong><strong>generated and collected by the CARTANA ISS service</strong>. <strong>The following data description is cited from the report provided by CARTANA ISS service:</strong></p> <p><em>"Folder "Reads" contains coordinates and gene information of segmented spots.<br> The coordinates are in pixel unit. Scaling factor is 0.32 um/pixel. (0,0) is at northwest (top-left corner).<br> With Low/High Threshold, we refer to the quality thresholding. Our technology is fluorescence based, i.e. with the thresholding one can balance how certain the signals are.</em></p> <p><em>Files ending with _LowThreshold: reads not matching with any known barcode were already discarded.</em></p> <p><em>Files ending with _HighThreshold: has information only about spots that passed additional quality check.</em></p> <p><em>Folder "GenePlots" has plotted images in static .png format, fully zoomed out. LowThreshold and HighThreshold follow the same thresholding strategy as in reads files."</em></p> <p> </p> <p><strong>SiT-master.zip is a download of the GitHub repository </strong><a href="https://github.com/ucagenomix/SiT">https://github.com/ucagenomix/SiT</a>, <strong>providing figures and analysis scripts for SiT.</strong></p> <p> </p> <p><strong>Related SiT data are deposited through GEO, accession number <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE153859">GSE153859</a></strong></p>
Domain scanning results for a selected set of high-quality-annotation protein isoforms produced by human transcription factor genes
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TIP55, a splice isoform of the KAT5 acetyltransferase, is essential for developmental gene regulation and organogenesis
GEO Series GSE111691. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
The histone variant macroH2A1 regulates key genes for myogenic cell fusion in a splice-isoform dependent manner [RNA-Seq]
GEO Series GSE147590. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
Global binding of isoforms of Wilms' Tumor gene 1 and H3K4me3 in K562 cells
GEO Series GSE81009. Homo sapiens. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Integrated analysis of H2A.Z isoforms reveals a complex interplay in gene regulation [U2OS_siZ1-siZ2 RNA-seq]
GEO Series GSE131571. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
An ancient testis-specific IQ motif containing H gene regulates specific isoform expression during spermatogenesis
GEO Series GSE214201. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Identification of genes that are regulated by the A and B isoforms of the human progesterone receptor
GEO Series GSE18276. Homo sapiens. 24 samples. Type: Expression profiling by array.
The histone variant macroH2A1 regulates key genes for myogenic cell fusion in a splice-isoform dependent manner [ChIP-Seq]
GEO Series GSE148044. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Gene Expression Profiles Induced by RNA interference on NSD1 Δ5Δ7, and NSD1 Δ19–23 isoforms in Fibroblast Cells I.
GEO Series GSE253402. Homo sapiens. 8 samples. Type: Expression profiling by array.
Analysis of gene regulation by the TP63 isoforms deltaNp63alpha and deltaNp63beta
GEO Series GSE283357. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide methylation analysis of DNMT3B gene isoforms revealed specific methylation profiles in breast cell lines
GEO Series GSE77348. Homo sapiens. 85 samples. Type: Methylation profiling by genome tiling array.
Chronic hypoxia changes gene expression profile of primary rat carotid body cells: consequences on the expression of NOS isoforms and ET-1 receptors
GEO Series GSE118544. Rattus norvegicus. 2 samples. Type: Expression profiling by array.
Different N-terminal isoforms of Oct-1 control expression of distinct sets of genes and their high level in cancer cells promotes pro-oncogenic processes
GEO Series GSE80287. Homo sapiens. 4 samples. Type: Expression profiling by array.
A twin UGUA motif directs the balance between gene isoforms through CFIm and the mTORC1 signaling pathway
GEO Series GSE210768. Mus musculus; Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
Gene expression in response to depletion of specific human histone H1 isoforms.
GEO Series GSE12299. Homo sapiens. 24 samples. Type: Expression profiling by array.
PR isoform-specific ER and PR chromatin binding and gene expression observed in-vitro in breast cancer cells.
GEO Series GSE80358. Homo sapiens. 50 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Gene expression profiling of neurons with Rbfox1 and Rbfox3 knockdown and rescue with cytoplasmic or nuclear Rbfox1 isoform [RNA-seq]
GEO Series GSE71916. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
The differential impact of HNRNPA1 isoforms on gene expression and their relevance to dsRNA-mediated innate immune response
GEO Series GSE286814. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Differential gene regulation by the disease-associated short isoform of GATA1 (microarray)
GEO Series GSE64494. Mus musculus. 9 samples. Type: Expression profiling by array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.