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11 results for “growth reconstruction”
Coral growth data for the research article "Reconstruction of long-term sub-lethal effects of warming on a temperate coral in a climate change hotspot" in Journal of Animal Ecology
<p>This repository contains the coral growth data files used to generate the results for the following article:</p> <p> </p> <p>MJ. Vergotti, JP. D’Olivo, T. Brachert, P. Capdevila, J. Garrabou, C. Linares, P. Spreter, DK. Kersting (2024) Reconstruction of long-term sub-lethal effects of warming on a temperate coral in a climate change hot-spot. <em>Journal of Animal Ecology</em>. https://besjournals.onlinelibrary.wiley.com/doi/10.1111/1365-2656.14225</p> <p> </p> <p><strong>Abstract: </strong>The impact of warming on zooxanthellate corals is widespread, from tropical to temperate seas, with their associated mortalities causing global concern. The temperate coral <em>Cladocora caespitosa</em> is the only zooxanthellate coral with reef-building capacity in the Mediterranean Sea, a climate change hotspot with warming rates triple the global average. Over the past two decades, <em>C. caespitosa</em> populations have suffered severe mortality events associated with marine heatwaves (MHWs). However, with monitoring efforts beginning, at best, in the 2000s, the occurrence of MHWs before to that period, as well as the sub-lethal effects of these events remain poorly understood. Here we use sclerochronology to reconstruct the histories of past stress events and long-term sub-lethal effects on <em>C. caespitosa</em> in three locations within the NW Mediterranean Sea, each with different environmental conditions. Skeletal extension, density and calcification rates were compared to the <em>in situ</em> seawater temperature of each site to assess their relationship. Additionally, we assessed the occurrence of skeletal growth anomalies to reconstruct stress events between 1991 and 2021, a period that encompasses the onset and evolution of warming-related mass mortality events in the NW Mediterranean Sea. Our results reveal a positive association between calcification and temperature, following a latitudinal temperature gradient. However, the evolution of the likelihood distribution of growth rates in the warmest site (Columbretes Islands) since the 1990s indicates a decrease in linear extension and calcification rates during the most recent years. With the increase in the frequency of MHWs and growth anomalies during the last decade, this decline suggests a recurrence in physiological stress events. These results unravel information on the long-term impacts of warming on coral growth and highlight the potential of applying sclerochronology to reconstruct sub-lethal effects of warming using <em>C. caespitosa</em>. </p> <p> </p> <p> </p> <p><strong>Funding</strong>: This research is supported by the Horizon 2020 program of research and innovation of the European Union under the MaCoBioS grant agreement, by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation, project no. 401447620) and by the Spanish Ministry of Science, Innovation and Universities under the project UndResCoral (project no. PID2022-137539OA-C22). D.K.K. was supported by a Ramon y Cajal postdoctoral grant funded by the Ministry of Science and Innovation (PEICTI 2021–2023; grant no. RYC2021-033576-I). C.L. acknowledges the support by ICREA Academia. J.G. acknowledges the grant “Severo Ochoa Centre of Excellence” accreditation (CEX2019-000928-S) funded by AEI 10.13039/501100011033.</p>
Data from: Reconstructing salmon growth trajectories through biochronologies across a highly variable growthscape
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A new algorithm for reconstructing tree height growth with stem analysis data
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Morphology and osteohistology of a large-bodied caenagnathid (Theropoda: Oviraptorosauria) from the Hell Creek Formation (Montana): implications for size-based classifications and growth reconstruction in theropods
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Figure 5. Muscle mass reconstruction method for M in A Computational Analysis of Limb and Body Dimensions in Tyrannosaurus rex with Implications for Locomotion, Ontogeny, and Growth
Figure 5. Muscle mass reconstruction method for M. caudofemoralis longus (see Methods); Carnegie specimen depicted. Dorsal and right lateral views are shown on topı and in the bottom row are caudal views of the right femur and then caudal vertebrae (8th and 17th). Red shaded volumes are the M. caudofemoralis longus reconstruction. Note a small space for M. caudofemoralis brevis (not reconstructed) is left around the ilium/sacrum and lateral to the CFL insertion. doi:10.1371/journal.pone.0026037.g005
The data for Reconstruction of Cosmic Black Hole Growth and Mass Distribution from Quasar Luminosity Functions at z>4: Implications for Faint and Low-mass Populations in JWST
<p>The data for Figure 1 in the AAS article: Reconstruction of Cosmic Black Hole Growth and Mass Distribution from Quasar Luminosity Functions at z>4: Implications for Faint and Low-mass Populations in JWST</p> <p>in each file, the column heads are x: M1450; y_f0: total Phi(Mpc^-3 mag^-1) for f_seed=1.0 y1_f0: unobscured Phi for f_seed=1.0 y_f1: total Phi for f_seed=0.1 y1_f1: unobscured Phi for f_seed=0.1</p>
Microbes in reconstructive restoration: Divergence in constructed and natural tree island soil fungi affects tree growth
<p>Project folder for publication "Microbes in reconstructive restoration: Divergence in constructed and natural tree island soil fungi affects tree growth" containing: 1) scripts for data processing, 2) intermediate and final files output by scripts, and 3) RMarkdown files used to perform statistical analyses and generate figures. Descriptions of files, scripts, and folders in README files.</p> <p>Manuscript Abstract:</p> <p><span>As ecosystems face unprecedented change and habitat loss, pursuing comprehensive and resilient habitat restoration will be integral to protecting and maintaining natural areas and the services they provide. Microbiomes offer an important avenue for improving restoration efforts as they <span> </span>are integral to ecosystem health and functioning. Despite microbiomes’ importance, unresolved knowledge gaps hinder their inclusion in restoration efforts. Here, we address two critical gaps in understanding microbial roles in restoration – fungal microbiomes’ importance in “reconstructive” restoration efforts and how management and restoration decisions interactively impact fungal communities and their cascading effects on trees. We combined field surveys, microbiome sequencing, and greenhouse experiments to determine how reconstructing an iconic landscape feature – tree islands – in the highly imperiled Everglades impacts fungal microbiomes and fungal effects on native tree species compared to their natural <span> </span>counterparts under different proposed hydrological management regimes. Constructed islands used in this research were built from peat soil and limestone collected from deep sloughs and levees nearby the restoration sites in 2003, providing 18 years for microbiome assembly on <span> </span>constructed islands. We found that while fungal microbiomes from natural and constructed tree islands exhibited similar diversity and richness, they differed significantly in community composition. These compositional differences arose mainly from changes to which fungal taxa were present on the islands rather than changes in relative abundances. Surprisingly, ~50% of fungal hub taxa (putative keystone fungi) from natural islands were missing on constructed islands, suggesting that differences in community composition of constructed island could be important for microbiome stability and function. The differences in fungal composition between natural and constructed islands had important consequences for tree growth. Specifically, these compositional differences interacted with hydrological regime (treatments simulating management strategies) to affect woody growth across the four tree species in our experiment. Taken together, our results demonstrate that reconstructing a landscape feature without consideration of microbiomes can result in diverging fungal communities that are likely to interact with management decisions leading to meaningful consequences for foundational primary producers. Our results recommend cooperation between restoration practitioners and ecologists to evaluate opportunities for active management and restoration of microbiomes during future reconstructive restoration.</span></p>
Text-fig. 2. Pauxillites thaddei sp. nov., a – reconstruction of ventral side of conch with visible growth-lines and rounded lateral edges; b – reconstruction of inner surface of triclaviculate operculum with muscle scar in the area between clavicles. The dotted line represents the predicted shape of cardinal area. in Pauxillites Thaddei A New Lower Ordovician Hyolith From Morocco
Text-fig. 2. Pauxillites thaddei sp. nov., a – reconstruction of ventral side of conch with visible growth-lines and rounded lateral edges; b – reconstruction of inner surface of triclaviculate operculum with muscle scar in the area between clavicles. The dotted line represents the predicted shape of cardinal area.
Systematic reconstruction of molecular cascades regulating growth plate development using single-cell RNA-seq
GEO Series GSE76157. Mus musculus. 217 samples. Type: Expression profiling by high throughput sequencing.
Transphyseal Vs. Physeal Sparing ACL Reconstruction in Skeletally Immature Patients: Risk of Subsequent Lower Extremity Growth Deformity
ClinicalTrials.gov study NCT03081026. IPD Sharing: NO. Countries: 1. Publications: 0.
Scaffold-free cryopreservable cartilage grafts obtained from hiPSC-derived chondroprogenitor cells for airway reconstruction with growth adaptability
GEO Series GSE299047. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.