Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
137
datasets available to search
ShareScore release 0.9.0
Dataset results
137 results for “herpesvirus”
Figure 7 in Pilot study: investigating the role of biofouling in transmission of Ostreid herpesvirus 1 (OsHV-1)
Figure 7. Detection of OsHV-1 DNA in serial dilutions prepared with tissue homogenates from various taxa. Data points are the average Ct value for duplicate tissue samples spiked with for each quantity of starting template.
Figure 3 in Pilot study: investigating the role of biofouling in transmission of Ostreid herpesvirus 1 (OsHV-1)
Figure 3. Settlement array structures used for collection of biofouling assemblages. (A) Diagram of the PVC pipe holding the collecting plates; (B, C) Array structures within a mesh basket to reduce predation when fixed to an intertidal oyster tray or deployed in a floating basket.
Figure 5 in Pilot study: investigating the role of biofouling in transmission of Ostreid herpesvirus 1 (OsHV-1)
Figure 5. Frequency of biofouling taxa on settlement plates deployed for the laboratory challenge experiment (n = 44).
Figure 4 in Pilot study: investigating the role of biofouling in transmission of Ostreid herpesvirus 1 (OsHV-1)
Figure 4. Experimental design to test for transmission of OsHV-1 from biofouling organisms recruited from the Georges River when challenged with OsHV-1 by cohabitation with Pacific oysters infected by injection. The number of replicate tanks is indicated along with the number and type of organisms present in each tank for the of acclimation, and two periods of cohabitation.
Figure 1. Scenarios and experimental design for assessing a in Pilot study: investigating the role of biofouling in transmission of Ostreid herpesvirus 1 (OsHV-1)
Figure 1. Scenarios and experimental design for assessing a range of biofouling organisms for the potential to spread OsHV-1. A. Scenario for the OsHV-1 transmission pathway evaluated by field surveillance. B.1 Scenario for the vessel biofouling OsHV-1 transmission pathway. B.2 Adaptation of the vessel biofouling scenario for a laboratory infection trial with Pacific oysters and biofouling organisms evaluated as intermediates for transmission from injected Pacific oysters to naïve Pacific oysters.
Figure 2 in Pilot study: investigating the role of biofouling in transmission of Ostreid herpesvirus 1 (OsHV-1)
Figure 2. Location of the three surveillance and sampling sites (A, B, and C) within Woolooware Bay and the Georges River estuary, NSW, Australia. Site A (Latitude: −34.0339; Longitude: 151.1467); Site B (−34.0260; 151.1413); and Site C (−34.0119; 151.1465).
First detection of herpesvirus and mycoplasma in free-ranging Hermann's tortoises (Testudo hermanni), and in potential pet vectors
<p>Two types of pathogens cause highly contagious upper respiratory tract diseases (URTD) in Chelonians: testudinid herpesviruses (TeHV) and a mycoplasma (<em>Mycoplasma agassizii</em>). In captivity, these infections are frequent and can provoke outbreaks. Pet trade generates international flow of tortoises, often without sanitary checking; individuals intentionally or accidentally released in the wild may spread pathogens. A better understanding of the transmission of infectious agents from captivity to wild tortoises is needed. Many exotic individuals have been introduced in populations of the endangered western Hermann’s tortoise (<em>Testudo hermanni hermanni</em>), notably spur-thighed tortoises (<em>Testudo graeca</em>). We assessed the presence of TeHV and mycoplasma in native western Hermann’s tortoises and in potential pet vectors in south-eastern France. Using a large sample (N=572 tortoises), this study revealed the worrying presence of herpesvirus in 7 free-ranging individuals (3 sub-populations). Additionally, <em>Mycoplasma agassizii</em> was detected in 15 of the 18 populations sampled with a frequency ranging from 2.5 to 25%. Exotic spur-thighed tortoises showed high frequency of <em>Mycoplasma </em>infection in captivity (18%) and in individuals (50%) found in native Hermann’s tortoise sub-populations, suggesting that this species could be a significant vector. The paucity of information of TeHV on European tortoise’ URTD in natural settings, especially in combination with mycoplasma, prompts for further studies. Indeed, sick tortoises remain concealed and may not be easily detected in the field. Our results indicate that both the prevalence and health impact of URTD are high should be scrutinized in the field.</p>
Reproductive aging weakens offspring survival and constrains the telomerase response to herpesvirus in Pacific oysters
<p>These datasets and codes report the impacts of aging on oyster parents and their offspring. We compared proteomic profiles (“parent_proteomic_rawdata.tsv”) of reproductive oysters (12 males and 12 females) of three age classes (young, middle age and old) (“parent_proteomic_design.txt”). We crossbred these adult oysters as described in the paper (DOI: 10.1126/sciadv.adq2311) to examine the impacts of parental aging on their offspring phenotypes. We explored the effects of reproductive aging on offspring growth (“offspring_growth_dataset.csv”) and survival rate at larval life stage from 0 to 40 days old(“larval_survival.csv”). We also measured spat resistance to OsHV1 in laboratory (“spat_mortality_OsHV1.csv”) and in the field (“spat_mortality_OsHV1_field.csv”), and offspring survival once they attained adulthood (“adult_survival.csv”). In parallel, we assayed intra- and inter-familial telomere length dynamics (“Telomere_dataset.csv”) and telomerase (“Telomerase_dataset.csv”) as described in the manuscript.</p> <p>We also uploaded the R codes used to analyse proteomic data on parents (“ADupoue - Analyses code-Parent proteomic.R”) and the impacts of parental aging on their offspring traits (“ADupoue - Analyses code-Offspring.R”).</p> <p>Finally, we provided the output of Markov Chain Monte Carlo models used to estimate narrow sense heritability in offspring traits (“growth_larvae.rds”, “growth_spat.rds”, “survival_larvae.rds”, “survival_OsHV1_lab.rds”, “survival_adult.rds”, “Telomere_preInf.rds”, “Telomere_postInf.rds”, “Telomerase_preInf.rds”, “Telomerase_postInf.rds”). </p>
A Pilot Trial of Herpesvirus Treatment in Idiopathic Pulmonary Fibrosis (IPF)
ClinicalTrials.gov study NCT02871401. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Data from: Primary envelopment of Kaposi’s sarcoma-associated herpesvirus at the nucleoplasmic reticulum
Open the record for dataset details and reuse information.
Data and code for: The complete Kaposi Sarcoma-associated herpesvirus genome induces early-onset, metastatic angiosarcoma in transgenic mice
Open the record for dataset details and reuse information.
HerpesFolds: A proteome-wide structural systems approach reveals insights into protein families and activities of all nine human herpesviruses
<p>These are the AlphaFold output files and ChimeraX sessions for "HerpesFolds: A proteome-wide structural systems approach reveals insights into protein families and activities of all nine human herpesviruses" by Timothy K. Soh, Sofia Ognibene, Saskia Sanders, Robin Schäper, Benedikt B. Kaufer, and Jens B. Bosse.</p>
Intermediary and supplemental data for publication "Heterogenous circulating miRNA changes in ME/CFS converge on a unified cluster of target genes and may be a result of modulation by latent herpesviruses: A computational analysis"
<p>Intermediary and supplemental data for publication "Heterogenous circulating miRNA changes in ME/CFS converge on a unified cluster of target genes and may be a result of modulation by latent herpesviruses: A computational analysis"</p>
Prospective Survey of CMV, Herpesviruses Infections and Diseases in Allo-HSCT
ClinicalTrials.gov study NCT04412811. IPD Sharing: NO. Countries: 1. Publications: 1.
Herpesviruses Reactivation In Hiv-Infected Women Initiating ART (HERA)
ClinicalTrials.gov study NCT03092505. IPD Sharing: Not stated. Countries: 2. Publications: 1.
Clinical Utility of Monitoring for Human Herpesvirus-6 (HHV-6) and Human Herpesvirus-7 (HHV-7) After Liver Transplant
ClinicalTrials.gov study NCT00242099. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Studies of Human Herpesvirus 8 and Kaposi's Sarcoma in Sicily
ClinicalTrials.gov study NCT00339937. IPD Sharing: Not stated. Countries: 1. Publications: 3.
Herpesvirus Immunology in Solid Organ Transplant Recipients - Liver Transplant Study
ClinicalTrials.gov study NCT05532540. IPD Sharing: UNDECIDED. Countries: 1. Publications: 1.
Data from: Identification and characterization of Cyprinid Herpesvirus-3 (CyHV-3) encoded microRNAs
Open the record for dataset details and reuse information.
Data from: Global distribution of Chelonid fibropapilloma-associated herpesvirus among clinically healthy sea turtles
Open the record for dataset details and reuse information.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.