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ShareScore release 0.9.0
Dataset results
10 results for “hg002”
The SV callsets of the HG002 human sample produced by cuteSV with multi long-read sequencing platforms.
<p>The SV callsets of the HG002 human sample produced by cuteSV with multi long-read sequencing platforms.</p>
Assembly of human HG002 (GM24385) ONT Q20+ Simplex dataset generated by phasebook
<p>This is assembly of human HG002 (GM24385) dataset generated by phasebook. The raw sequencing data is from : October 2021 GM24385 Q20+ Simplex Dataset Release. Reads from 4 flowcells were used. https://labs.epi2me.io/gm24385_q20_2021.10/?</p>
HG002 data for Profiling Chromatin Accessibility in Humans Using Adenine Methylation and Long-Read Sequencing
<p>This dataset includes 6mA frequency data for the HG002 native DNA (untreated) sample sequenced on nanopore r9.4.1.</p>
HG002 DNA (PacBio and ONT) and UHRR RNA (ONT) base modification data for minimod
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DRAGEN files for HG002
<p>This contains all the VCF (SNV for HG001-07 and SV, STR, CNV for HG002) files and targeted caller JSON file. All these files were generated from DRAGEN4.2 run with the GRCh38 reference genome. </p>
Error-corrected HG002 experimental high-accuracy UL reads
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SWaveform resource GIAB HG002 data
<p>This is a part of data associated with SWaveform resource (swaveform.compbio.ru). The data encompasses depth of coverage (DOC) signals from Genome in a Bottle consortia (GIAB) [Zook, Justin M et al. 2016] sample HG002. As the latter provides variant calls and regions for use in benchmarking and validating variant calling pipelines and contains a smaller number of individuals, we envision it to be a demo collection to deploy the SWaveform locally and to test the accompanying toolset.</p>
Data for: Nanopore R10.4.1 LSK114 HG002: subset of 20000 reads in BLOW5 format
<p>HG002 (NA24385) is a reference human genome sample used for benchmarking and comparing bioinformatics applications. This dataset contains a subset of 20,000 reads from the HG002 human reference sample, sequenced using an Oxford Nanopore Technologies PromethION sequencer on an R10.4.1 flowcell. Sheared DNA libraries (~17Kb) were prepared using the ONT LSK114 ligation library prep and an R10.4.1 flow cell was used to generate ~30X genome coverage. The original data in the FAST5 format was converted to BLOW5 format using slow5tools v0.8.0. This is a downsampled subset containing 20,000 reads in BLOW5 format.</p>
Data for: Nanopore R10.4.1 LSK114 HG002: subset of 20000 reads in BLOW5 format
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Assembly graphs and reference Verkko assembly for HG002 dataset
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.