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18 results for “historical contingency”
Historical contingency shapes adaptive radiation in Antarctic fishes [Data set]
<p>Assembled reference contigs for protein-coding exons and conserved non-coding regions from targeted sequence enrichment of notothenioid fishes and outgroups. </p> <p>Published in : Daane, JM, Dornburg, A, Smits, P, MacGuigan, D, Hawkins, B, Near, TJ, Detrich, HW III*, Harris MP*. (2019). Historical contingency shapes adaptive radiation in Antarctic fishes. <em>Nature Ecology & Evolution.</em></p> <p> </p> <p>-contigs.zip contains the assembled contigs for each species. Each contig represents a targeted region with the addition of flanking DNA sequence</p> <p>-cnes.zip contains the targeted conserved non-coding regions isolated from the larger contigs in contigs.zip</p> <p>-exons.zip contains the targeted protein coding exons isolated from the larger contigs in contigs.zip</p> <p>-protein.zip contains the translated protein coding exons from exons.zip</p>
7,000 years of turnover: historical contingency and human niche construction shape the Caribbean's Anthropocene biota
The human-mediated movement of species across biogeographic boundaries—whether intentional or accidental—is dramatically reshaping the modern world. Conservation biologists are grappling with the present-day effects of these introductions, but humans have in fact been reshaping ecosystems and translocating species for millennia. Acknowledging the effects of human-mediated species introductions through time is important for understanding present-day biodiversity loss, ecosystem functioning, and management needs. Here, we present the first database of terrestrial vertebrate species introductions spanning the entire anthropogenic history of a system. This ~7,000 year Caribbean dataset allows us to assess the roles of historical contingency and priority effects in shaping present-day conservation outcomes. We analyzed the spatial and temporal dynamics of species introductions in the context of cultural practices and human population histories spanning Indigenous, colonial, and modern human societies. We highlight how serial human colonization contributed to habitat modifications and species extinctions that then shaped subsequent species introductions by other human groups, altering ecosystem processes dramatically. We quantify how the taxonomic and biogeographical diversity of species introductions increases over time, reflecting diversifying reasons for species introductions. Importantly, we use the record to highlight gaps in the archaeological record, ongoing management challenges, and research opportunities in today's Caribbean biota.
7,000 years of turnover: historical contingency and human niche construction shape the Caribbean’s Anthropocene biota
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Data from: Historical contingency in the evolution of antibiotic resistance after decades of relaxed selection
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Data from: Historical contingency, niche conservatism and the tendency for some taxa to be more diverse towards the poles
Aim We test the ability of the biotic exchange across the Bering land-bridge coupled to niche conservatism to explain current day mammalian diversity gradients. Location the Holarctic Taxon mammals Methods We compared the diversity within clades that participated in the exchange (colonizers), whose ancestors withstood the Beringian cold temperatures, with that within clades that did not participate (sedentaries). We contrasted biogeographical patterns, tested the ability of environmental models to predict species richness of colonizers and sedentaries across continents and, compared richness-climate relationships between colonizers and sedentaries controlling for phylogenetic effects. Results We find that assemblages of colonizers are more diverse towards higher latitudes, opposing the traditional latitudinal diversity gradient which is followed by sedentaries. Despite the long passage of time since this major dispersal event, we find that the geographic distribution of colonizers is more strongly correlated to the distributions of other colonizers inhabiting a different continent than to the distribution of sedentary species. Main conclusions Our results highlight the importance of historical migrations and dispersal in configuring present-day diversity gradients. We also suggest that colonizers may be particularly vulnerable to future climate change because of the predicted disproportionate decrease in climate space in the extra-tropical realm where they are currently most diverse.
Data from: Species coexistence: macroevolutionary relationships and the contingency of historical interactions
Evolutionary biologists since Darwin have hypothesized that closely related species compete more intensely and are therefore less likely to coexist. However, recent theory posits that species diverge in two ways: either through the evolution of 'stabilizing differences' that promote coexistence by causing individuals to compete more strongly with conspecifics than individuals of other species, or through the evolution of 'fitness differences' that cause species to differ in competitive ability and lead to exclusion of the weaker competitor. We tested macroevolutionary patterns of divergence by competing pairs of annual plant species that differ in their phylogenetic relationships, and in whether they have historically occurred in the same region or different regions (sympatric vs. allopatric occurrence). For sympatrically-occurring species pairs, stabilizing differences rapidly increased with phylogenetic distance. However, fitness differences also increased with phylogenetic distance, resulting in coexistence outcomes that were unpredictable based on phylogenetic relationships. For allopatric species, stabilizing differences showed no trend with phylogenetic distance, whereas fitness differences increased, causing coexistence to become less likely among distant relatives. Our results illustrate the role of species' historical interactions in shaping how phylogenetic relationships structure competitive dynamics, and offer an explanation for the evolution of invasion potential of non-native species.
Data from: Historical contingency and behavioural divergence in territorial Anolis lizards
The extent that evolution—including adaptation—is historically contingent (dependent on past events) has often been hotly debated, but is still poorly understood. In particular, there is little data on the degree that behaviour, an aspect of the phenotype that is strongly linked to contemporary environments (social or physical), retains the imprint of evolutionary history. In this study, I examined whether differences in the design of the territorial displays among species of Caribbean Anolis lizards reflect island specific selection regimes, or historically contingent predispositions associated with different clade histories. Adult males advertise territory ownership using a series of headbobs and dewlap extensions, bouts of which vary in duration among species. When display durations were mapped onto the Anolis phylogeny, prominent differences between species belonging to the Western and Eastern Caribbean radiations were apparent. Statistical analyses confirmed that species differences in the duration of headbob displays, and to some extent the duration of dewlap extensions, were historically contingent. The unique evolutionary histories of each clade have seemingly had a profound effect on the subsequent direction of display evolution among descendent taxa. These results combined with those from previous studies on these lizards show that past history can have an important impact on the type of behaviour exhibited by species today, to the point that adaptive evolution can proceed quite differently in lineages originating from different evolutionary starting points.
Inverse priority effects: A role for historical contingency during species losses
<p>Communities worldwide are losing multiple species at an unprecedented rate, but how communities reassemble after these losses is often an open question. It is well established that the order and timing of species arrival during community assembly shapes forthcoming community composition and function. Yet, whether the order and timing of species losses can lead to divergent community trajectories remains largely unexplored. Here, we propose a novel framework that sets testable hypotheses on the effects of the order of species losses inverse priority effects and suggests its integration into the study of community assembly. We propose that the order of species losses within a community can generate alternative reassembly trajectories, and suggest mechanisms that may underlie these inverse priority effects. To formalize these concepts quantitatively, we used a three-species Lotka-Volterra competition model, enabling to investigate conditions in which the order of species losses can lead to divergent reassembly trajectories. The inverse priority effects framework proposed here promotes the systematic study of the dynamics of species losses from ecological communities, ultimately aimed to better understand community reassembly and guide management decisions in light of rapid global change.</p>
Data from: Historical contingency, niche conservatism and the tendency for some taxa to be more diverse towards the poles
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Data from: Historical contingency and behavioural divergence in territorial Anolis lizards
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Inverse priority effects: A role for historical contingency during species losses
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Data from: Historical contingency in a multigene family facilitates adaptive evolution of toxin resistance
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Data from: Species coexistence: macroevolutionary relationships and the contingency of historical interactions
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Data from: Historical contingency and productivity effects on food-chain length
Food-chain length (FCL) is a fundamental ecosystem attribute, integrating information on both food web composition and ecosystem processes. It remains untested whether FCL also reflects the history of community assembly known to affect community composition and ecosystem functioning. Here, we performed microcosm experiments with a copepod (top predator), two ciliate species (intermediate consumers), and bacteria (producers), and modified the sequence of species introduction into the microcosm at four productivity levels to jointly test the effects of historical contingency and productivity on FCL. FCL increased when the top predator was introduced last; thus, the trophic position of the copepod reflected assembly history. A shorter FCL occurred at the highest productivity level, probably because the predator switched to feeding at the lower trophic levels because of the abundant basal resource. Thus, we present empirical evidence that FCL was determined by historical contingency, likely caused by priority effects, and by productivity.
Data from: Standing chromosomal variation in Lake Whitefish species pairs: the role of historical contingency and relevance for speciation
The role of chromosome changes in speciation remains a debated topic, although demographic conditions associated with divergence should promote their appearance. We tested a potential relationship between chromosome changes and speciation by studying two Lake Whitefish (Coregonus clupeaformis) lineages that recently colonized postglacial lakes following allopatry. A dwarf limnetic species evolved repeatedly from the normal benthic species, becoming reproductively isolated. Lake Whitefish hybrids experience mitotic and meiotic instability, which may result from structurally divergent chromosomes. Motivated by this observation, we test the hypothesis that chromosome organization differs between Lake Whitefish species pairs using cytogenetics. While chromosome and fundamental numbers are conserved between the species (2n = 80, NF = 98), we observe extensive polymorphism of subtle karyotype traits. We describe intrachromosomal differences associated with heterochromatin and repetitive DNA, and test for parallelism among three sympatric species pairs. Multivariate analyses support the hypothesis that differentiation at the level of subchromosomal markers mostly appeared during allopatry. Yet we find no evidence for parallelism between species pairs among lakes, consistent with colonization effect or postcolonization differentiation. The reported intrachromosomal polymorphisms do not appear to play a central role in driving adaptive divergence between normal and dwarf Lake Whitefish. We discuss how chromosomal differentiation in the Lake Whitefish system may contribute to the destabilization of mitotic and meiotic chromosome segregation in hybrids, as documented previously. The chromosome structures detected here are still difficult to sequence and assemble, demonstrating the value of cytogenetics as a complementary approach to understand the genomic bases of speciation.
Data from: Historical contingency and productivity effects on food-chain length
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Data from: Phenotypic and genotypic convergences are influenced by historical contingency and environment in yeast
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Data from: Standing chromosomal variation in Lake Whitefish species pairs: the role of historical contingency and relevance for speciation
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