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opencc-zeroNov 2023View details →

Supporting information for: Accounting for the topology of road networks to better explain human-mediated dispersal in terrestrial landscapes

Human trade and movements are central to biological invasions worldwide. Human activities not only transport species across biogeographical barriers but also accelerate their post-introduction spread in the landscape. Thus, by constraining human movements, the spatial structure of road networks might greatly affect the regional spread of invasive species. However, few invasion models have accounted for the topology of road networks so far, and its importance for explaining the regional distribution of invasive species remains mostly unexplored. To address this issue, we developed a spatially explicit and mechanistic human-mediated dispersal model that accounts and tests for the influence of transport networks on the regional spread of invasive species. Using as a model the spread of the invasive ant Lasius neglectus in the middle Rhône valley (France), we show that accounting for the topology of road networks improves our ability to explain the current distribution of the invasive ant. In contrast, we found that using human population density as a proxy for the frequency of transport events decreases models' performance and might thus not be as appropriate as previously thought. Finally, by differentiating road networks into sub-networks, we show that national and regional roads are more important than smaller roads for explaining spread patterns. Overall, our results demonstrate that the topology of transport networks can strongly bias regional invasion patterns and highlight the importance of better incorporating it into future invasion models. The mechanistic modelling approach developed in this study should help invasion scientists explore how human-mediated dispersal and topography shape invasion dynamics in landscapes. Ultimately, our approach could be combined with demographic, natural dispersal and environmental suitability models to refine spread scenarios and improve invasive species monitoring and management at regional to national scales.

opencc-zeroOct 2021View details →

Human-mediated dispersal redefines mangrove biogeography in the Anthropocene

Introduction of species by humans breaks down biogeographic boundaries and results in the homogenization of species composition, yet empirical tests of this impact in marine forest ecosystems are still scarce. Large-scale planting aimed at reversing losses of mangroves has been the dominant strategy for mangrove restoration adopted by many organizations in the past decades, but there is a lack of quantitative understanding of the impacts of such large-scale plantings on mangrove biogeography. Here we used data collected before and after large-scale planting to compare the species richness and compositional similarities among 72 mangrove sites over a biogeographic scale (18-28 °N) in China. After the large-scale planting, 15 of the mangrove species spread towards the higher latitudes, reflecting the geographical barriers of the mangrove plants have been broken. Local species richness of mangrove increased by 44.82% and biogeographic compositional similarity of mangroves increased by 13.33%, reflecting large-scale introduction and planting increase local diversity of mangrove but enhance biological homogenization. The dispersal limitation of mangrove communities reduced by 11.1%, which indicates that the community assemblage process of mangrove changed obviously. Worryingly, two alien species, Sonneratia apetala and Laguncularia racemose, have dispersal across the biogeographic scale studied, reflecting an increase in the risk of biogeographic invasion. It is expected that biological homogeneity and species invasion will further influence the functional biogeography of mangroves. Our results highlight that mangrove biogeography is defined by human activities in the Anthropocene.

publicOct 2021View details →

Human-mediated dispersal redefines mangrove biogeography in the Anthropocene

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publicNov 2023View details →

Supporting information for: Accounting for the topology of road networks to better explain human-mediated dispersal in terrestrial landscapes

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opencc-zeroDec 2012View details →

Data from: Range expansion of house sparrows (Passer domesticus) in Kenya: evidence of genetic admixture and human-mediated dispersal

Introduced species offer an opportunity to study the ecological process of range expansions. Recently, 3 mechanisms have been identified that may resolve the genetic paradox (the seemingly unlikely success of introduced species given the expected reduction in genetic diversity through bottlenecks or founder effects): multiple introductions, high propagule pressure, and epigenetics. These mechanisms are probably also important in range expansions (either natural or anthropogenic), yet this possibility remains untested in vertebrates. We used microsatellite variation (7 loci) in house sparrows (Passer domesticus), an introduced species that has been spreading across Kenya for ~60 years, to determine if patterns of variation could explain how this human commensal overcame the genetic paradox and expresses such considerable phenotypic differentiation across this new range. We note that in some cases, polygenic traits and epistasis among genes, for example, may not have negative effects on populations. House sparrows arrived in Kenya by a single introduction event (to Mombasa, ~1950) and have lower genetic diversity than native European and introduced North American populations. We used Bayesian clustering of individuals (n = 233) to detect that at least 2 types of range expansion occurred in Kenya: one with genetic admixture and one with little to no admixture. We also found that genetic diversity increased toward a range edge, and the range expansion was consistent with long-distance dispersal. Based on these data, we expect that the Kenyan range expansion was anthropogenically influenced, as the expansions of other introduced human commensals may also be.

opencc-zeroDec 2016View details →

Data from: Human-mediated and natural dispersal of an invasive fish in the eastern Great Lakes

The globally invasive Round Goby (Neogobius melanostomus) was introduced to the Great Lakes around 1990, spreading widely and becoming the dominant benthic fish in many areas. The speed and scope of this invasion is remarkable and calls into question conventional secondary spread models and scenarios. We utilized 9 microsatellites to identify large-scale genetic structure in Round Goby populations in the eastern Great Lakes, and assessed the role of colonization versus secondary transport and dispersal in developing this structure. We identified three clusters, corresponding with Lake Huron, eastern Lake Erie, and western Lake Erie plus eastern Lake Ontario, along with three highly-divergent populations. Bottleneck analysis identified founder effects in two divergent populations. Regression analyses of isolation-by-distance and allelic richness vs. distance from the initial invasion site were consistent with limited migration. However, some populations in eastern Lake Erie and Lake Ontario showed anomalously low genetic distance from the original site of colonization, consistent with secondary transport of large numbers of individuals via ballast water. Genetic structure of Round Goby in the Great Lakes principally resulted from long-distance secondary transport via ballast water with additional movement of individual via bait buckets and natural dispersal. The success of Round Gobies represents an interesting model for colonization characterization; however, those same attributes present significant challenges for conservation and fisheries management. Current management likely prevents many new species from arriving in the Great Lakes, but fails to address the transport of species within the lakes after they arrive; an issue of clear and pressing importance.

opennotspecifiedFeb 2014View details →

Figure 4 in The distribution of the Malay civet Viverra tangalunga (Carnivora: Viverridae) across Southeast Asia: natural or human-mediated dispersal?

Figure 4. Mismatch distribution computed for the concatenated mitochondrial sequences for all samples, and for the different populations (Peninsular Malaysia, Borneo, Philippines, Sulawesi, and Moluccas); solid line, observed distribution of pairwise differences; dashed line, expected distribution under the model of sudden demographic expansion.

opennotspecifiedFeb 2014View details →

Figure 2. Phylogenetic relationships among Viverra tangalunga inferred from mtDNA haplotypes from the concatenated 797 in The distribution of the Malay civet Viverra tangalunga (Carnivora: Viverridae) across Southeast Asia: natural or human-mediated dispersal?

Figure 2. Phylogenetic relationships among Viverra tangalunga inferred from mtDNA haplotypes from the concatenated 797-bp mitochondrial control region and cytochrome b sequences. Trees for each of the three analyses (neighbour joining, maximum likelihood, and Bayesian inference) had similar topologies. Numbers above the branches represent bootstrap support, with only values> 60% shown. Numbers in parentheses represent the number of individuals sharing the same haplotype; haplotype codes are listed in Appendix S3.

opennotspecifiedFeb 2014View details →

Figure 1 in The distribution of the Malay civet Viverra tangalunga (Carnivora: Viverridae) across Southeast Asia: natural or human-mediated dispersal?

Figure 1. The location of Viverra tangalunga samples used in this study. The grey shading indicates the currently known distribution of V. tangalunga (see Jennings & Veron, 2011). The size of each dot represents the number of samples per locality.

opennotspecifiedAug 2011View details →

Distribution. Sulawesi and adjacent Is (Buton, Kabaena, Muna, Peleng, Lembeh, and on some of the Togian Is); thought to be extinct on Selayar I. Pigs have been widely domesticated through the Indonesian archipelago and beyond. This primarily involved the Eurasian Wild Pig (S. scrofa), but also S. celebensis, the only other species of pig successfully domesticated. Mitochondrial DNA studies of the dispersion of these domesticated forms agree on three major dispersal events, two involving S. scrofa and one S. celebensis. Evidence supports an early human-mediated translocation of S. celebensis to Flores and Timor and two later, separate human-mediated dispersals of domestic pig through islands of SE Asia into Oceania. In addition to Flores and Timor, S. celebensis is also thought to occur in its domesticated form on Halmahera, Lendu, Roti, and Savur Is, and even on Simeulue and Nias Is to the W of Sumatra and far from its island of origin, Sulawesi. In the Moluccas, and possibly elsewhere in this region, introduced S. celebensis are thought to have hybridized with other introduced pigs of S. scrofa derivation, and apparent hybrids between these species are now reported to survive on a number of islands, including Salawatti, Great Kei, Dobu, Seram, Ambon, Bacan, Ternate, Morotai, and New Guinea. It is also reported that in the 19" century the sows of domestic pigs in Sulawesi frequently mated with wild animals, after which they returned to their villages. in Suidae

Distribution. Sulawesi and adjacent Is (Buton, Kabaena, Muna, Peleng, Lembeh, and on some of the Togian Is); thought to be extinct on Selayar I. Pigs have been widely domesticated through the Indonesian archipelago and beyond. This primarily involved the Eurasian Wild Pig (S. scrofa), but also S. celebensis, the only other species of pig successfully domesticated. Mitochondrial DNA studies of the dispersion of these domesticated forms agree on three major dispersal events, two involving S. scrofa and one S. celebensis. Evidence supports an early human-mediated translocation of S. celebensis to Flores and Timor and two later, separate human-mediated dispersals of domestic pig through islands of SE Asia into Oceania. In addition to Flores and Timor, S. celebensis is also thought to occur in its domesticated form on Halmahera, Lendu, Roti, and Savur Is, and even on Simeulue and Nias Is to the W of Sumatra and far from its island of origin, Sulawesi. In the Moluccas, and possibly elsewhere in this region, introduced S. celebensis are thought to have hybridized with other introduced pigs of S. scrofa derivation, and apparent hybrids between these species are now reported to survive on a number of islands, including Salawatti, Great Kei, Dobu, Seram, Ambon, Bacan, Ternate, Morotai, and New Guinea. It is also reported that in the 19" century the sows of domestic pigs in Sulawesi frequently mated with wild animals, after which they returned to their villages.

opencc-zeroAug 2019View details →

Data from: Diatraea saccharalis history of colonization in the Americas. The case for human-mediated dispersal

The sugarcane borer moth, Diatraea saccharalis, is one of the most important pests of sugarcane and maize crops in the Western Hemisphere. The pest is widespread throughout South and Central America, the Caribbean region and the southern United States. One of the most intriguing features of D. saccharalis population dynamics is the high rate of range expansion reported in recent years. To shed light on the history of colonization of D. saccharalis, we investigated the genetic structure and diversity in American populations using single nucleotide polymorphism (SNPs) markers throughout the genome and sequences of the mitochondrial gene cytochrome oxidase (COI). Our primary goal was to propose possible dispersal routes from the putative center of origin that can explain the spatial pattern of genetic diversity. Our findings showed a clear correspondence between genetic structure and the geographical distributions of this pest insect on the American continents. The clustering analyses indicated three distinct groups: one composed of Brazilian populations, a second group composed of populations from El Salvador, Mexico, Texas and Louisiana and a third group composed of the Florida population. The predicted time of divergence predates the agriculture expansion period, but the pattern of distribution of haplotype diversity suggests that human-mediated movement was most likely the factor responsible for the widespread distribution in the Americas. The study of the early history of D. saccharalis promotes a better understanding of range expansion, the history of invasion, and demographic patterns of pest populations in the Americas.

publicNov 2017View details →

Data from: Human-mediated and natural dispersal of an invasive fish in the eastern Great Lakes

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publicAug 2019View details →

Data from: Diatraea saccharalis history of colonization in the Americas. The case for human-mediated dispersal

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