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ShareScore release 0.9.0
Dataset results
2 results for “imputation panel”
Imputation panel for low-pass whole genome sequencing (GLIMPSE2 format)
<p>This dataset includes autosomal genotypes from the 1000 Genomes +HGDP project (<a href="https://doi.org/10.1101/2023.01.23.525248" target="_blank" rel="noopener">10.1101/2023.01.23.525248 </a>) as well as X chromosome genotypes from the NY Genome Center (as of yet, a comparable dataset that includes HGDP is not available for the X; see 10.1016/j.cell.2022.08.004). The genotypes were down-sampled so as to be appropriate for low-pass imputation; uncertain phase calls were removed (any PP tags), and individuals deemed to be outliers or relatives (based on autosomal data, as per the first citation) were also removed. Similarly, singleton polymorphisms were also excluded. Hemizygous genotypes on the X were converted into (quasi) diploid genotypes.</p> <p>These data were then converted into a binary imputation panel format using glimpse v2 (https://odelaneau.github.io/GLIMPSE/; using the static binaries provided). The "chunk" size was doubled from the defaults (which considers a minimum number of snps, genetic length and physical length) so as to be more performant.</p>
Pre-built leave-out-out cross-validation imputation reference panel datasets - LmTag paper
<p>Pre-built leave-out-out cross-validation imputation reference panel datasets - LmTag paper (complement for a tutorial at https://github.com/datngu/LmTag)</p> <p>This repo includes chromosome 10 reference panel data constructed for 3 populations:</p> <p>- EAS</p> <p>- EUR</p> <p>- SAS</p>
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.