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ShareScore release 0.9.0
Dataset results
4 results for “in silico methods”
Supplements for "Understanding the interaction between a human transferrin receptor aptamer-short double stranded RNA conjugate and its cell membrane target by in silico methods"
<p>Supplements for "Understanding the interaction between a human transferrin receptor aptamer-short double stranded RNA conjugate and its cell membrane target by in silico methods". </p> <p>This supplement includes the following files:</p> <p> </p> <p>1. Structures of the most stable Protein-Aptamer complexes predicted from HADDOCK</p> <p>Haddock_Cluster1.pdb <br> Haddock_Cluster2.pdb <br> Haddock_Cluster3.pdb </p> <p>2. Structure of the most stable conformation aligned with Protein-transferring complex PDB</p> <p>cluster1_aligned.pdb <br> transferrin_aligned.pdb </p> <p>3. MM-GBSA decomposition analysis of the three replicas for Protein-Aptamer</p> <p>aptamer_new_rep01_Decomp.dat <br> aptamer_new_rep02_Decomp.dat <br> aptamer_new_rep03_Decomp.dat </p> <p>4. MM-GBSA decomposition analysis of the three replicas for Protein-Aptamer-Conjugate<br> conjugate_new_rep01_Decomp.dat <br> conjugate_new_rep02_Decomp.dat <br> conjugate_new_rep03_Decomp.dat <br> </p> <p><br> <br> </p>
Dataset for article: Antimicrobial peptide induced colloidal transformations in bacteria-mimetic vesicles: Combining in silico tools and experimental methods
<p><strong>Dataset for publication:</strong></p><p>Antimicrobial peptide induced colloidal transformations in bacteria-mimetic vesicles: Combining in silico tools and experimental methods<br><i>Rafael V.M. Freire, Yeny Pillco-Valencia, Gabriel C.A. da Hora, Madeleine Ramstedt, Linda Sandblad, Thereza A. Soares, Stefan Salentinig</i><br>Journal of Colloid and Interface Science Volume 596, 15 August 2021, Pages 352-363 https://doi.org/10.1016/j.jcis.2021.03.060</p><p>Setup and conditions for the experiments are described in the experimental section of the published (open access) manuscript.</p><p>Data description in README.txt file.</p>
Dataset for the manuscript "In silico evaluation of variant calling methods for bacterial whole genome sequencing"
<p>Input data and associated analysis code for reproducing results reported in the manuscript.</p>
A combination of high-throughput in vitro and in silico new approach methods for ecotoxicology hazard assessment for fish
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.