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18 results for “indicator species analysis”
Text-fig. 4. Graphical visualization of Phytogeographic Reference Regions Assessment (PRRA) of nearest living relative genera of fossil-taxa from late Early Miocene Wiesa assemblage in eastern Germany. Analysis yields only NLRs which have modern distribution area (partly) in E and SE Asia. For relationships of fossil-taxa to nearest living relatives or ecological equivalents, see Tab. 6; taxa used for analysis marked with asterisks. Three geographic resolutions conducted: a – grid with 1.5° latitude/longitude resolution, b – grid with 2°, c – grid with 3°; similarity column indicates cooccurrences of genera of nearest living relatives in single grid box. Maximum value in our analysis: grid box marked with arrow in map a, located in western Yunnan Province, P. R. China and southern Kachin Province, NE Myanmar (east of Myitkyina city), area with 97.371 7–98.874 2° longitude and 24.586 7–25.837 5° latitude, yields 23 co-occurring species of 13 genera (Tab. 7). in Assessment Of Phytogeographic Reference Regions For Cenozoic Vegetation: A Case Study On The Miocene Flora Of Wiesa (Germany)
Text-fig. 4. Graphical visualization of Phytogeographic Reference Regions Assessment (PRRA) of nearest living relative genera of fossil-taxa from late Early Miocene Wiesa assemblage in eastern Germany. Analysis yields only NLRs which have modern distribution area (partly) in E and SE Asia. For relationships of fossil-taxa to nearest living relatives or ecological equivalents, see Tab. 6; taxa used for analysis marked with asterisks. Three geographic resolutions conducted: a – grid with 1.5° latitude/longitude resolution, b – grid with 2°, c – grid with 3°; similarity column indicates cooccurrences of genera of nearest living relatives in single grid box. Maximum value in our analysis: grid box marked with arrow in map a, located in western Yunnan Province, P. R. China and southern Kachin Province, NE Myanmar (east of Myitkyina city), area with 97.371 7–98.874 2° longitude and 24.586 7–25.837 5° latitude, yields 23 co-occurring species of 13 genera (Tab. 7).
Elk resource selection and indicator species analysis
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Fig. 1. Phylogenetic relationships of species of Eusurbus and Zentamyia. Tree generated from morpho- logical phylogenetic analysis, unambiguous apomorphies mapped on branches, black circles indicate non- homoplasious changes.
Fig. 1. Phylogenetic relationships of species of Eusurbus and Zentamyia. Tree generated from morpho- logical phylogenetic analysis, unambiguous apomorphies mapped on branches, black circles indicate non- homoplasious changes.
Indicator Species Analysis Results
<p>Paper: Diversity and composition of fungal soil communities across prescribed burn areas in temperate hardwood forests</p> <p>Authors: S.D. Russell & M.C. Aime</p> <p>A spreadsheet containing the combined DESeq2 log2FoldChange and Random Forest MeanDecreaseAccuracy metrics for each OTU. Supplementary material for the paper above.</p>
FIGURE 7. Phylogenetic tree from Bayesian analysis. Thick branches indicate posterior probabilities over 80 in Revision of the Ranitomeya fantastica species complex with description of two new species from Central Peru (Anura: Dendrobatidae)
FIGURE 7. Phylogenetic tree from Bayesian analysis. Thick branches indicate posterior probabilities over 80.
Figure 6. Chronogram resulting from Bayesian analysis employing a in Phylogeny indicates polyphyly in Cnodocentron (Trichoptera: Xiphocentronidae): biogeography and revision of New World species (Caenocentron)
Figure 6. Chronogram resulting from Bayesian analysis employing a relaxed clock. Most likely ancestral distribution recovered in DEC analysis and estimated mean age are displayed at the nodes. Dispersal events are indicated as a black line below the distribution boxes, vicariant events are indicated in a green line, as recovered in the biogeographic analysis. Highest posterior density (HPD) 95% intervals for the ages of the nodes are indicated by light blue bars. Timescale and global surface temperature estimated from δ18O benthic (Zachos et al., 2001) are displayed on the bottom. Eocene and Miocene thermal optimum are highlighted in grey. Cnodocentron and Caenocentron species distributions are shown in the maps.
FIGURE. Phylogenetic tree derived from Bayesian analysis, based on nrLSU data. Posterior probability (PP> 0.95) values from the Bayesian analysis are added at the nodes. The scale bar represents the number of nucleotide changes per site. (T) indicates the type specimen for this species. The new species are in bold. in Four new species of Entoloma (Entolomataceae, Agaricomycetes) subgenera Cyanula and Claudopus from Vietnam and their phylogenetic position
FIGURE. Phylogenetic tree derived from Bayesian analysis, based on nrLSU data. Posterior probability (PP> 0.95) values from the Bayesian analysis are added at the nodes. The scale bar represents the number of nucleotide changes per site. (T) indicates the type specimen for this species. The new species are in bold.
FIGURE. Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, ex-neotype, or reference strain). in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest
FIGURE. Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, ex-neotype, or reference strain).
FIGURE. (Continued) Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, exneotype, or reference strain). in Six new species of Cladosporium associated with decayed leaves of native bamboo (Bambusoideae) in a fragment of Brazilian Atlantic Forest
FIGURE. (Continued) Multilocus phylogenetic tree inferred from Bayesian analysis based on the combined TEF1-α and ACT sequences. Bayesian posterior probabilities are indicated next to the nodes. The tree was rooted with Cladosporium herbarum CBS 121621. The species in this study are indicated in bold. Types of species are indicated after the culture collection number (T = ex-type, ex-epitype, exneotype, or reference strain).
FIGURE 11. Identification tree. Neighbor-Joining analysis involving 20 in Six new species of Afrotropical Allodia (Diptera: Mycetophilidae): DNA barcodes indicate recent diversification with a single origin
FIGURE 11. Identification tree. Neighbor-Joining analysis involving 20 CO1 sequences. Evolutionary distances were calculated using the p-distance model. Abbreviations: M = male, F = female. Sequences retrieved from BOLD (Ratasingham & Hebert 2007) are labelled with Process ID (see Appendix 1). See methods for details.
Table S.4 - List of the indicator species obtained from the 10,000 SDMs analysis
<p>Oteiza, M (2019). Table S.4 - List of the indicator species obtained from the 10,000 SDMs analysis. MSc Thesis. Universidad Internacional Menéndez Pelayo</p>
Table S.5 - List of the indicator species obtained from the 1,000 SDMs analysis
<p>Oteiza, M (2019). Table S.5 - List of the indicator species obtained from the 1,000 SDMs analysis. MSc Thesis. Universidad Internacional Menéndez Pelayo</p>
Fig. 1 in Possible Indicators of Feeding Habit Types: Analysis of the Mouthparts of Five Dichotomius Hope (Coleoptera: Scarabaeidae) Species from Argentina
Fig. 1. Mouthparts of the five studied species of Dichotomius: D. carbonarius, D. sericeus, D. nisus, D. mormon, and D. depressicollis. A) Epipharynx and B) Labium (glossa and paraglossa) in dorsal view and hypopharynx. The D. nisus epipharynx shows the presence of a mite basally.
Comparative analysis of Dipodomys species indicates that kangaroo rat hindlimb anatomy is adapted for rapid evasive leaping
<p><span>Body size is a key factor that influences antipredator behavior. For animals that rely on jumping to escape from predators, there is a theoretical trade-off between jump distance and acceleration as body size changes at both the inter- and intraspecific levels. Assuming geometric similarity, acceleration will decrease with increasing body size due to a smaller increase in muscle cross-sectional area than body mass. Smaller animals will likely have a similar jump distance as larger animals due to their shorter limbs and faster accelerations. Therefore, in order to maintain acceleration in a jump across different body sizes, hind limbs must be disproportionately bigger for larger animals. We explored this prediction using four species of kangaroo rats (<i>Dipodomys </i>spp.), a genus of bipedal rodent with similar morphology across a range of body sizes (40–150 g). Kangaroo rat jump performance was measured by simulating snake strikes to free-ranging individuals. Additionally, morphological measurements of hind limb muscles and segment lengths were obtained from thawed frozen specimens. Overall, jump acceleration was constant across body sizes and jump distance increased with increasing size. Additionally, kangaroo rat hind limb muscle mass and cross-sectional area scaled with positive allometry. Ankle extensor tendon cross-sectional area also scaled with positive allometry. Hind limb segment length scaled isometrically, with the exception of the metatarsals, which scaled with negative allometry. Overall, these findings support the hypothesis that kangaroo rat hind limbs are built to maintain jump acceleration rather than jump distance. Selective pressure from single-strike predators, such as snakes and owls, likely drives this relationship.</span></p>
Data from: Quantitative genetic analysis indicates natural selection on leaf phenotypes across wild tomato species (Solanum sect. Lycopersicon; Solanaceae)
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Comparative analysis of Dipodomys species indicates that kangaroo rat hindlimb anatomy is adapted for rapid evasive leaping
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FIGURE. Phylogenetic tree derived from Bayesian analysis, based on nrITS1-5.8S-ITS2 region data. Posterior probability (PP> 0.95) values from the Bayesian analysis are added at the nodes. The scale bar represents the number of nucleotide changes per site. (T) indicates the type specimen for this species. The new species are in bold. in Four new species of Entoloma (Entolomataceae, Agaricomycetes) subgenera Cyanula and Claudopus from Vietnam and their phylogenetic position
FIGURE. Phylogenetic tree derived from Bayesian analysis, based on nrITS1-5.8S-ITS2 region data. Posterior probability (PP> 0.95) values from the Bayesian analysis are added at the nodes. The scale bar represents the number of nucleotide changes per site. (T) indicates the type specimen for this species. The new species are in bold.
FIGURE. Phylogram of Tolypocladium generated from Maximum likelihood analysis of ITS, SSU and LSU sequence data. Purpureocillium lilacinum (CBS 284.36) was selected as an outgroup taxon. The tree topology of the ML analysis was similar to the BI. Maximum likelihood bootstrap values greater than 75 and Bayesian posterior probabilities over 0.90 were indicated above the nodes. The scale bar indicates 0.006 changes. The new species was in blue. in Yunnan-Guizhou Plateau: a mycological hotspot
FIGURE. Phylogram of Tolypocladium generated from Maximum likelihood analysis of ITS, SSU and LSU sequence data. Purpureocillium lilacinum (CBS 284.36) was selected as an outgroup taxon. The tree topology of the ML analysis was similar to the BI. Maximum likelihood bootstrap values greater than 75 and Bayesian posterior probabilities over 0.90 were indicated above the nodes. The scale bar indicates 0.006 changes. The new species was in blue.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.