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3,788 results for “indicators”
Observed phenological indicators and environmental drivers at global change experiments at the Jornada Basin LTER site, 2014-2020
This dataset contains plant phenological data extracted from phenocams installed at a global exchange experiment involving Chihuahuan desert plant communities at the Jornada Basin LTER site in southern New Mexico, U.S.A. Cycles of plant growth, termed phenology, are tightly linked to environmental controls, and our overarching objective in this study is to determine if temperature or precipitation are relatively more important for determining shrub and grass greenup date (start of season) and senescence date (end of season). At these camera locations, we experimentally manipulated incoming precipitation at the Jornada Basin LTER for over a decade and recorded plant leaf phenology at the daily scale for seven years using phenocams. The data here are derived from raw "phenocam" camera data collected at two ongoing studies at the Jornada Basin LTER site, one studying ecosystem responses to long term changes in water and nitrogen availability, and one studying plant productivity and partitioning responses to water availability and herbivory (studies 349 and 456, respectively). Phenocams at the sites have collected images since 2014, and basic color and greenness data extracted from those images are available in a companion dataset on EDI (knb-lter-jrn.210574001). This dataset includes the derived annual and quarterly phenological indices and greenness indices for each plot monitored by phenocams, and temperature and precipitation variables aggregated to the same frequency. The dataset also includes R code and input files used to generate these derived data. See Currier and Sala 2022 for more details. This study is ongoing.
Harmonized Palmer Drought Severity Indices throughout the Contiguous United States for HydroBASINS basins
In times of a changing hydroclimate and growing human population, there is a need to assess how various climatic and demand conditions influence water availability on the landscape. Tendency for drought conditions is a prime example of a key hydroclimatic metric that is useful for understanding water retention in the surrounding landscape. However, merging drought climatological data with co-located aquatic data is challenging. To facilitate national-scale analyses of basin-level drought conditions (i.e., Palmer Drought Severity Index; PDSI) with co-located water quality data, we present aggregated PDSI data for the contiguous United States. Data are aggregated using the HydroBASINS basin shapefiles. HYBAS_ID is retained to enable merging with HydroBASINS parent datasets.
Canopy Phenology and Greenness Indices at 13 Sites across North America 2003-2012
This data set contains camera-derived color index data, which serve as a proxy for canopy phenology. The data set spans 13 geographically distinct research sites, including 17 different cameras it total, each of which was mounted on a eddy flux tower for intercomparison of canopy and photosynthesis phenology. Each site was dominated by one of three PFTs: deciduous broadleaf forest, evergreen needleleaf forest, and grassland/crops (see HF215-01 for details). On each eddy covariance tower, a digital camera was installed in a fixed position, with a view across the top of the canopy. Most cameras collected photos, which were saved in 24-bit JPEG format, at 30-60 minute intervals, 12-24 hours a day. Time series were first visually inspected for camera shifts and changes in field of view. Noting these changes, we processed the image archives to extract regions of interest (ROI) that encompassed all portions of the full canopy within the foreground. To quantify canopy greenness, we calculated the green chromatic coordinate (GCC), which is widely used to monitor canopy development and identify phenological phase changes, as follows: GCC = DNG / (DNR + DNG + DNB) where DN is the digital number and R, G and B denote the red, green and blue channels, respectively. The Excess Green (ExG) index was then calclated as follows: ExG = 2 * DNG - (DNR + DNB) To characterize canopy coloration in fall, the red chromatic coordinate (RCC) was calculated using the same form as GCC, substituting DNR in the numerator. Indices have been smoothed along a 3-day interval, using a 90th percentile filter (Sonnentag et al. 2012). For each deciduous broadleaf site, there are three files – one each for GCC, ExG and RCC. For the grassland and evergreen needleleaf sites, there are two files, one each for GCC and ExG.
Spectral Vegetation Indices from Harmonized Landsat and Sentinel-2 Data for Harvard Forest 2015-2020
The goal of this work is to exploit time series of remotely sensed data sets with ground observations to improve our understanding of how seasonal variation in canopy and environmental conditions affect the relationship between vegetation indices and leaf area index (LAI) and fraction of absorbed photosynthetically active radiation (fAPAR). Using three different common vegetation indices (EVI2, NDVI, NIRV), we can estimate LAI, fAPAR, and daily absorbed photosynthetically active radiation (APAR) using a semi-empirical model.
Indicative distribution maps for Ecosystem Functional Groups - Level 3 of IUCN Global Ecosystem Typology
<p>This dataset includes the current version of the indicative distribution maps and profiles for <strong>Ecosystem Functional Groups</strong> - Level 3 of IUCN Global Ecosystem Typology (v2.1). Please refer to Keith <em>et al.</em> (2020) and Keith et al. (2022).</p> <p>The descriptive profiles provide brief summaries of key ecological traits and processes for each functional group of ecosystems to enable any ecosystem type to be assigned to a group.</p> <p>Maps are indicative of global distribution patterns and are not intended to represent fine-scale patterns. The maps show areas of the world containing major (value of 1, coloured red) or minor occurrences (value of 2, coloured yellow) of each ecosystem functional group. Minor occurrences are areas where an ecosystem functional group is scattered in patches within matrices of other ecosystem functional groups or where they occur in substantial areas, but only within a segment of a larger region. Most maps were prepared using a coarse-scale template (e.g. ecoregions), but some were compiled from higher resolution spatial data where available (see details in profiles). Higher resolution mapping is planned in future publications.</p> <p>We emphasise that spatial representation of Ecosystem Functional Groups does not follow higher-order groupings described in respective ecoregion classifications. Consequently, when Ecosystem Functional Groups are aggregated into<strong> functional biomes</strong> (Level 2 of the Global Ecosystem Typology), spatial patterns may differ from those of biogeographic biomes. Differences reflect the distinctions between functional and biogeographic interpretations of the term, “biome”.</p>
Mid-winter habitat suitability indices for centrarchids in contiguous lentic areas of the Upper Mississippi River System: 1994-2018
This dataset includes raw measurements and calculated bluegill winter habitat suitability indices for depth (HSID), dissolved oxygen (HSIDO), temperature (HSIT), and flow (HSIF), as well as an overall bluegill winter habitat suitability index (HSIO), for 2915 mid-winter, lentic sampling locations across 208 contiguous lentic areas throughout the Upper Mississippi River System (Upper Mississippi and Illinois Rivers) from 1994-2018. This dataset also includes several spatial and temporal climatic and hydrogeomorphic parameters that were used to assess potential drivers of winter habitat suitability.
Ecological Survey of Central Arizona: a survey of key ecological indicators in the greater Phoenix metropolitan area and surrounding Sonoran desert, ongoing since 1999
The Ecological Survey of Central Arizona (ESCA) is an extensive field survey and integrated inventory designed to capture key ecological indicators of the CAP LTER study area consisting of the urbanized, suburbanized, and agricultural areas of metropolitan Phoenix, and the surrounding Sonoran desert. The survey, formerly known as the survey 200 and renamed to ESCA in 2015, assesses conditions at approximately 200 sample plots (30m x 30m) that were located randomly using a tessellation-stratified dual-density sampling design. Beginning in 2000, the study is conducted every five years except the 2020 survey, which was conducted in 2023 owing to delays to due Covid. Study plots cover habitats throughout the CAP LTER study area ranging from native Sonoran desert sites to residential yards to an airport tarmac. Measurements include an inventory of all plants (identified to the lowest possible taxonomic unit, typically species), plant biovolume, soil coring for physicochemical properties, arthropod sweep-net sampling, photo documentation, and a visual survey of site and area characteristics. The objectives of the survey are to (1) characterize patches in terms of key biotic, physical, and chemical variables, and (2) examine relationships among land use, general plant diversity, native plant diversity, plant biovolume, soil nutrient status, and social-economic indices along an indirect urban gradient. A pilot survey was conducted in 1999, and the first full ESCA was conducted in 2000. The maiden survey in 2000 featured a suite of measurements that were not assessed in later surveys, including data from a portable weather station set up during the field survey at each location, organic matter decomposition, pollen, and mycorrhizae. In 2010, the survey was expanded to include an assessment of one of the residential parcels overlapping the survey plot at sites in residential areas. Many of the same variables that are measured in the 30m x 30m survey plot are measured in the p
Ecological Survey of Central Arizona: a survey of key ecological indicators in parcels of residential areas in the greater Phoenix metropolitan area, ongoing since 2010
The Ecological Survey of Central Arizona (ESCA) is an extensive field survey and integrated inventory designed to capture key ecological indicators of the CAP LTER study area consisting of the urbanized, suburbanized, and agricultural areas of metropolitan Phoenix and the surrounding Sonoran desert. The survey is conducted every five years at approximately 200 sample plots (30m x 30m) that were located randomly using a tessellation-stratified, dual-density sampling design. Study plots cover habitats throughout the CAP LTER study area ranging from native Sonoran desert sites to residential yards to an airport tarmac. In 2010, the survey was expanded to include an assessment of residential parcels overlapping the survey plot at sites in residential areas. Many of the same variables that are measured in the 30m x 30m survey plot are measured in the parcel, including an inventory of perennial plants, and the biovolume of trees. In addition, a detailed assessment of characteristics of the parcel is performed. Investigators interested in data from the broader Ecological Survey of Central Arizona that includes all survey plots can find those data in the Environmental Data Initiative data repository at [this](https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-cap&identifier=652) link.
Calibrating Abundance Indices of Red Back Salamanders at Harvard Forest 2014
Herpetologists and conservation biologists frequently use convenient and cost-effective, but less accurate, abundance indices (e.g. artificial cover boards or natural objects surveys) in lieu of more accurate but costly and destructive population size estimators to detect and monitor size, state, and trends of amphibian populations. Despite advantages and disadvantages to each approach, studies calibrating abundance indices so they can be used as reliable population estimators are rare. We calibrated indices based on surveys under artificial cover boards and natural objects with a more accurate estimator of population sizes of red back salamanders (Plethodon cinereus (Green)) in a New England forest. Plethodon cinereus is an ecologically significant indicator species of forest dynamics, and accurate calibration of these indices should increase their reliability for monitoring programs. Average density/m2, capture probability, relative density of both natural objects searches, and cover board observations of P. cinereus in 30 × 30-m plots at the Harvard Forest (Petersham, Massachusetts, USA) were similar in stands dominated by Tsuga canadensis (eastern hemlock) and deciduous hardwood species (predominantly Quercus rubra [red oak] and Acer rubrum [red maple]). Abundance indices based on both cover board and natural object surveys were able to be calibrated using density estimates of P. cinereus derived from depletion (removal) surveys. The cover board index underestimated the estimated density of P. cinereus by 40%, but the natural object survey underestimated it by about 55%. We conclude that when calibrated and used appropriately, abundance indices can provide cost-effective and reliable measures of P. cinereus abundance that may be used in conservation assessments and long-term monitoring of northeastern USA forests.
Red-backed Salamanders as Indicators of Hemlock Forest Health at Harvard Forest 2014
Species that react quickly to ecological changes are useful indicators for assessing forest health. Red-backed salamanders (Plethodontid cinereus) may be used as an indicator species in declining hemlock forests, allowing for assessment of soil quality and forest health. We hypothesized that decline of hemlock stands due to the effect of hemlock woolly adelgid would negatively impact the abundance of red-backed salamanders by altering soil quality. In the Hemlock Removal Experiment at Harvard Forest, eight-0.8ha plots were treated either with girdling to simulate adelgid invasion, logging to simulate preemptive logging strategies, no treatment in hemlock areas, or no treatment in hardwood areas. Within these treatments in June and July of 2014, P. cinereus relative abundance was determined from coverboard surveys. Soil quality was determined from core samples. Bulk density, pH, carbon-nitrogen ratio, moisture, soil temperature, and litter depth were measured, and ordination was used to create an index of soil quality from these. There was a significant correlation between plot treatment and soil quality (p less than 0.05). Temperature, CN ratio, and pH influenced a strong significant negative correlation between soil quality and salamander abundance (pless than 0.05). Soil quality affected by hemlock decline influenced salamander abundance. These data suggest that we could gain an understanding of forest health and soil quality by examining salamander abundance. Assessing adelgid invasion can be difficult and objective, whereas salamander abundances are easily measured; therefore, we suggest that salamander abundances could be useful in assessing the health of hemlock forest ecosystems.
Updated DEVOTES indicator catalogue of MSFD indicator systems targeting descriptors D1, D2, D4, and D6
<p>This is version 8 of the Catalogue of Indicators of the FP7 project DEVOTES (grant number 308392) that aims at supporting the implementation of the EU MSFD. This catalogue of indicators is an inventory of existing methods. The metadata have been updated and extended since deiverable D3-1 of the DEVOTES project. You can learn more about the DEVOTES project at: http://www.devotes-project.eu</p> <p>All data are provided without a guarantee of correctness or completeness. We are aware of some errors in the database content and are continuously working on correcting these and on supplementing the content with new metadata.</p> <p>The data can be best viewed with the free DEVOTool software, available at http://www.devotes-project.eu/devotool. By using the DEVOTool software, you accept the license conditions as outlined in section 6 of the software manual distributed together with DEVOTool. </p>
Indicative distribution map for Ecosystem Functional Group MT2.2 Large seabird and pinniped colonies
<p>This archive contains indicative distribution maps and profiles for <strong>MT2.2 Large seabird and pinniped colonies</strong>, a ecosystem functional group (EFG, level 3) of the <a href="https://global-ecosystems.org/">IUCN Global Ecosystem Typology</a> (v2.1). Please refer to Keith <em>et al.</em> (2020) and Keith <em>et al.</em> (2022) for details.</p> <p>The descriptive profiles provide brief summaries of key ecological traits and processes, maps are indicative of global distribution patterns, and are not intended to represent fine-scale patterns. The maps show areas of the world containing major (value of 1, coloured red) or minor occurrences (value of 2, coloured yellow) of each ecosystem functional group. Minor occurrences are areas where an ecosystem functional group is scattered in patches within matrices of other ecosystem functional groups or where they occur in substantial areas, but only within a segment of a larger region. Given bounds of resolution and accuracy of source data, the maps should be used to query which EFG are likely to occur within areas, rather than which occur at particular point locations. Detailed methods and references for the maps are included in the profile (xml format).</p>
Indicative distribution map for Ecosystem Functional Group F2.10 Subglacial lakes
<p>This archive contains indicative distribution maps and profiles for <strong>F2.10 Subglacial lakes</strong>, a ecosystem functional group (EFG, level 3) of the <a href="https://global-ecosystems.org/">IUCN Global Ecosystem Typology</a> (v2.1). Please refer to Keith <em>et al.</em> (2020) and Keith <em>et al.</em> (2022) for details.</p> <p>The descriptive profiles provide brief summaries of key ecological traits and processes, maps are indicative of global distribution patterns, and are not intended to represent fine-scale patterns. The maps show areas of the world containing major (value of 1, coloured red) or minor occurrences (value of 2, coloured yellow) of each ecosystem functional group. Minor occurrences are areas where an ecosystem functional group is scattered in patches within matrices of other ecosystem functional groups or where they occur in substantial areas, but only within a segment of a larger region. Given bounds of resolution and accuracy of source data, the maps should be used to query which EFG are likely to occur within areas, rather than which occur at particular point locations. Detailed methods and references for the maps are included in the profile (xml format).</p>
Indicative distribution map for Ecosystem Functional Group M1.10 Rhodolith/Maërl beds
<p>This archive contains indicative distribution maps and profiles for <strong>M1.10 Rhodolith/Maërl beds</strong>, a ecosystem functional group (EFG, level 3) of the <a href="https://global-ecosystems.org/">IUCN Global Ecosystem Typology</a> (v2.1). Please refer to Keith <em>et al.</em> (2020) and Keith <em>et al.</em> (2022) for details.</p> <p>The descriptive profiles provide brief summaries of key ecological traits and processes, maps are indicative of global distribution patterns, and are not intended to represent fine-scale patterns. The maps show areas of the world containing major (value of 1, coloured red) or minor occurrences (value of 2, coloured yellow) of each ecosystem functional group. Minor occurrences are areas where an ecosystem functional group is scattered in patches within matrices of other ecosystem functional groups or where they occur in substantial areas, but only within a segment of a larger region. Given bounds of resolution and accuracy of source data, the maps should be used to query which EFG are likely to occur within areas, rather than which occur at particular point locations. Detailed methods and references for the maps are included in the profile (xml format).</p>
European Collaboration for Healthcare Optimisation (ECHO) Indicators Definition Crosswalks
<p><strong>European Collaboration for Healthcare Optimisation (ECHO) Indicators Definition Crosswalks</strong></p> <p>ECHO indicators rationale and code definition mapped out in ICD-9 and ICD-10 (for diagnoses) and ICD-9, NOMESCO, OPCS-4, ACHI and Leustungkatalog. </p> <p> </p>
Indicators of Contaminant Sources, PFAS, and Water Quality in Ellerbe Creek and New Hope Creek, NC (2019-2022)
Thousands of chemical contaminants are found in urban stream globally. This is a dataset of water quality measures of (1) compounds that are indicative of specific contaminant sources, (2) common water quality measures [trace metals, major ions, nutrients], and (3) PFAS. Sampling was conducted in Ellerbe Creek and New Hope Creek in the Durham and Orange counties of North Carolina. Biweekly and synoptic sampling was undertaken to explore spatial and temporal variation in water concentrations.
Vegetation indices calculated from reflectance spectra collected at LTER plots at Toolik Lake, Alaska during the 2007-2019 growing seasons.
Vegetation indices calculated from reflectance spectra collected at Arctic LTER experimental plots at Toolik Lake, Alaska during the 2007-2019 growing seasons. Long term experimental plots span several different vegetation types: Heath (HTH89), Moist Acidic Tussock (MAT89 and Low Fert), Moist Non-Acidic Tussock (MNAT), Non-Acidic Non-Tussock (NANT), Shrub (SHB), and Wet Sedge (WSG). Plots are differentiated by their experimental treatment and are located in replicate blocks.Canopy reflectance is measured by hand-held spectrophotometer and several indices of interest (NDVI, EVI, EVI2, PRI, WBI, and Chlorophyll index) are calculated.
Long-term climate indices (SPEI and scPDSI) derived from monthly meteorology data collected at USHCN stations in the northern Chihuahuan Desert of the United States, 1911-2021
Drought indices — Standardized Precipitation Evapotranspiration Index (SPEI) and the self-calibrating Palmer Drought Severity Index (scPDSI) —where derived from 9 United States Historical Climate Network (USHCN) stations on the Chihuahuan Desert in North America for this dataset. USHCN is a subset of the NOAA Cooperative Observer Program (COOP) Network, which consists of selected sites based on spatial coverages and completeness of data. Monthly precipitation depths, minimum, maximum and mean temperature were pulled from the dataset. These drought indices were derived using the SPEI package and scPDSI packages in R. Potential evapotranspiration was also calculated in R using the Thornthwaite method. All 9 sites are within the bounds of the Chihuahuan Desert in the state of New Mexico, with a single site (EL PASO) in the state of Texas.
Seasonal sea ice indices including the timing of ice-edge advance and ice-edge retreat (in year day), the ice season duration (in days) and number of actual ice days (versus open water days) within the ice season, extracted for various PAL LTER sub-regions West of the Antarctic Peninsula and derived from passive microwave satellite data for 1979/80 to 2023/24 ice seasons.
Seasonal sea ice indices including the timing of ice-edge advance and ice-edge retreat (in year day), the ice season duration (in days) and number of actual ice days (versus open water days) within the ice season, extracted for various PAL LTER sub-regions West of the Antarctic Peninsula and derived from passive microwave satellite data for 1979/80 to 2023/24 ice seasons. The ice season duration is defined as the time elapsed between day of ice-edge advance and day of ice-edge retreat within a given sea ice year, which begins mid-February (mean minimum of summer sea ice extent for the Southern Ocean) and ends the following mid-February. See Stammerjohn et al (2008, JGR) for further details.
Dissolved Organic Carbon Concentration, Dissolved Organic Matter Optical Properties, and Water Quality Indicators in the Plum Island Estuary (PIE), Massachusetts, USA (2018-2023)
This is a data set of paired in situ measurements of water quality parameters, total suspended solids concentration, and concentration and optical properties (absorption coefficient spectra and fluorescence indices) of dissolved organic matter (DOM) collected between 2018 and 2023 in the Plum Island Estuary and nearshore waters. In situ water quality measurements (salinity, temperature, optical dissolved oxygen saturation, turbidity, and dissolved organic matter fluorescence) were collected with a water quality sonde from the surface (top 1 m of water column), along with corresponding samples that were processed and analyzed in the lab for dissolved organic carbon (DOC) concentration, chromophoric DOM (CDOM), absorption coefficient spectra, DOM excitation-emission matrix (EEM) fluorescence, and total suspended sediment (TSS) concentration. The data were used in multiple studies (see manuscripts listed below) focusing on the dynamics of DOC and CDOM in the Plum Island Estuary.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.