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19
datasets available to search
ShareScore release 0.9.0
Dataset results
19 results for “inverted repeat”
Annotation of inverted repeats displaying features of pble STIR or IR in the hg38 genome model
<p>Annotation of inverted repeats displaying features of pble STIR or IR in the hg38 genome model. The annotation of <em>pble</em>-like inner inverted repeats was done using Palindrome (EMBOSS package). The output file was then filtered using pal2gff (https://github.com/Leelouh/pal2gff/blob/main/pal2gff.py), using as parameters a repeat size between 5 and 15 nucleotides, a spacer between pairs of inverted repeats (IRs) of 2 to 10 nucleotides, and a number of mismatches within repeats ranging from 0 to 1. These parameters were chosen taking into account those of the inner IRs found at ends of invertebrate pbles.</p>
Data from: Total duplication of the small single copy region in the angiosperm plastome: rearrangement and inverted repeat instability in Asarum
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The chicken or the egg? Plastome evolution and an independent loss of the inverted repeat in papilionoid legumes
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Data from: Polymorphism pattern at a Miniature Inverted-repeat Transposable Element locus downstream of the domestication gene Teosinte-branched1 in wild and domesticated pearl millet
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small RNA sequences from grafted Arabidopsis thaliana expressing SucSUL inverted repeat
GEO Series GSE112885. Arabidopsis thaliana. 4 samples. Type: Non-coding RNA profiling by high throughput sequencing.
ALTERED MERISTEM PROGRAM1 impairs RNA silencing through repressing the biogenesis of inverted repeats-derived siRNAs in Arabidopsis [Methyl-seq]
GEO Series GSE233872. Arabidopsis thaliana. 2 samples. Type: Methylation profiling by high throughput sequencing.
The activity of the mammalian DNA transposon piggyBat from Myotis lucifugus is restricted by its own terminal inverted repeat
GEO Series GSE245531. Homo sapiens. 6 samples. Type: Other.
Drosophila retrotransposon and inverted repeat-derived endogenous siRNAs are differentially processed in distinct cellular locations
GEO Series GSE82128. Drosophila melanogaster. 18 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Distinctive profiles of small RNA couple inverted repeat-induced post-transcriptional gene silencing with endogenous RNA silencing pathways in Arabidopsis
GEO Series GSE38922. Arabidopsis thaliana. 7 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Origin-Dependent Inverted-Repeat Amplification: Tests of a Model for Inverted DNA Amplification
GEO Series GSE74443. Saccharomyces cerevisiae. 15 samples. Type: Genome variation profiling by genome tiling array.
Alternative Polyadenylation Determines the Functional Landscape of Inverted Alu Repeats
GEO Series GSE232587. Homo sapiens. 22 samples. Type: Expression profiling by high throughput sequencing.
ALTERED MERISTEM PROGRAM1 impairs RNA silencing through repressing the biogenesis of inverted repeats-derived siRNAs in Arabidopsis
GEO Series GSE233874. Arabidopsis thaliana. 8 samples. Type: Methylation profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Control of Rice Tillering by RNA-directed DNA Methylation at Miniature Inverted-repeat Transposable Elements
GEO Series GSE131319. Oryza sativa Japonica Group. 18 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Movement of Arabidopsis thaliana inverted repeat small RNA between leaves vascular and epidermis tissues
GEO Series GSE112929. Arabidopsis thaliana. 8 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
A specific dsRNA-binding protein complex selectively sequesters endogenous Inverted-Repeat siRNA precursors and inhibits their processing.
GEO Series GSE92309. Arabidopsis thaliana. 4 samples. Type: Non-coding RNA profiling by high throughput sequencing.
ALTERED MERISTEM PROGRAM1 impairs RNA silencing through repressing the biogenesis of inverted repeats-derived siRNAs in Arabidopsis [small RNA-seq]
GEO Series GSE233873. Arabidopsis thaliana. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
sRNA-seq of Aspergillus fumigatus expressing a pksP or pabA inverted-repeat transgene
GEO Series GSE300894. Aspergillus fumigatus. 15 samples. Type: Non-coding RNA profiling by high throughput sequencing.
sRNA-seq of Aspergillus fumigatus RNAi double knockouts expressing a pksP inverted-repeat transgene
GEO Series GSE286229. Aspergillus fumigatus. 15 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Intronic and intergenic inverted repeats form dsRNA that activate RNase L but escape detection from the IFN system
GEO Series GSE143638. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.