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2 results for “laboratory notebook”
Research data supporting "Considerations for Implementing Electronic Laboratory Notebooks in an Academic Research Environment"
<p><em>Research data supporting the publication:</em></p> <p><em>Higgins SG, Nogiwa-Valdez AA, Stevens MM, Considerations for Implementing Electronic Laboratory Notebooks in an Academic Research Environment, Nature Protocols, 2021.</em></p> <p>This repository contains the raw survey data of 172 current and historic electronic laboratory notebook (ELN) software packages.</p> <p>Main files:</p> <ul> <li>"ELN_Review_Higgins_2021_Survey.csv" = raw survey data in 'tidy' data format</li> <li>"ELN_Review_Higgins_2021.Rmd" = an R Markdown File (R Notebook) that takes the survey data as input and produces summary statistics and plots. This file was written using R Studio as the IDE.</li> </ul> <p>Derived files, generated from those above:</p> <ul> <li>"ELN_Review_Higgins_2021.nb.html" = a self-contained HTML file that is automatically generated by R Studio, based on the markdown file. This can be opened in any web browser to allow manual inspection of the code and comments without the need for specialist software. Embedded within this file is also the original markdown script (i.e. a copy of the code in "ELN_Review_Higgins_2021.Rmd")</li> <li>"ELN_Review_Higgins_2021_Lifetimes_Interactive_Figure1.html" = an HTML file generated by the script above via the plotly package. It contains an interactive version of the ELN survey data, allowing the user to hover over the timeline and explore the data.</li> <li>"ELN_Review_Higgins_2021_Timeline.pdf" = static version of ELN timeline, used to generate figure in main manuscript.</li> <li>"ELN_Review_Higgins_2021_Releases-Per-Year.pdf" = static version of number of new ELNs per year, used to generate figure in main manuscript.</li> </ul> <p>This survey was generated from a mixture of primary and secondary sources (see references for secondary sources).</p>
Over Decomposition Laboratory Notebook (Companion for IPDPS 2017)
<p>This package includes the laboratory notebook (in Org Mode) the culminated to our submission to IPDPS 2017, under the title "Using Simulation to Evaluate and Tune the Performance of Dynamic Load Balancing of an Over-decomposed Geophysics Application". It includes the Ondes3D source code, all the collected data, the execution, extraction and analysis scripts that have been written in R and bash languages. The source file of the paper, also written in Org, is also included.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.