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ShareScore release 0.9.0
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9 results for “library programs”
Artifacts of the CGO 2024 Paper: EasyTracker: A Python Library for Controlling and Inspecting Program Execution
<p>This is the archive of the artifacts for the CGO 2024 Paper <em>"EasyTracker: A Python Library for Controlling and Inspecting Program Execution"</em></p> <p>The EasyTracker library is an open source project, refer to the Home page and Gitlab repository for up-to-date versions: </p> <ul> <li>Home Page: <a href="https://corse.gitlabpages.inria.fr/easytracker">https://corse.gitlabpages.inria.fr/easytracker</a></li> <li>Repository: <a href="https://gitlab.inria.fr/CORSE/easytracker">https://gitlab.inria.fr/CORSE/easytracker</a></li> </ul> <p>The details of the artifacts generation are described in the paper appendix or in the <code>README.md</code> file included in the main artifacts archive <code>easytracker-artifacts-cgo-2024-v1.2.0.tar.gz</code>.</p> <p>Summary of artifacts construction steps (execution in a Docker container):</p> <ul> <li>ensure Docker is installed with <code>docker --version</code>,</li> <li>download the artifacts archive <code>easytracker-artifacts-cgo-2024-v1.2.0.tar.gz</code>,</li> <li>extract with <code>tar xvzf easytracker-artifacts-cgo-2024-v1.2.0.tar.gz</code>,</li> <li>change dir with <code>cd eastracker-artifacts-cgo-2024</code>,</li> <li>download the EasyTracker sources archive <code>easytracker-archive-dfe8aa888f.tar.gz</code><a href="../api/records/10428215/draft/files/easytracker-archive-dfe8aa888f.tar.gz/content" target="_blank" rel="noopener noreferrer">,</a></li> <li>extract with <code>tar xvzf easytracker-archive-dfe8aa888f.tar.gz</code>,</li> <li>download the docker image <code>docker-image-easytracker-1.2.0.tar</code>,</li> <li>load the Docker image with <code>docker load -i docker-image-easytracker-1.2.0.tar</code>, </li> <li>generate all artifacts with <code>./in-docker.sh ./run-all.sh</code>,</li> <li>all artifacts are generated in <code>figure-*/</code> directories,</li> <li>refer to the artifacts archive <code>README.md</code> file for more details, or refer to the paper artifacts appendix.</li> </ul> <p>Note that this artifacts archive is extracted from the artifacts repository at tag <code>v1.2.0</code>: <a title="Opens in new tab" href="https://gitlab.inria.fr/CORSE/easytracker-artifacts-cgo-2024/-/tree/v1.2.0" target="_blank" rel="noopener">https://gitlab.inria.fr/CORSE/easytracker-artifacts-cgo-2024/-/tree/v1.2.0 </a></p>
SurrogateLIB: An extendable library of mixed-integer programs with embedded machine learning predictors
<p>We constructed a set of Mixed-Integer Programming (MIP) instances with embedded Machine Learning (ML) predictors. The generators for these instances are available at: <a href="https://github.com/Opt-Mucca/PySCIPOpt-ML">https://github.com/Opt-Mucca/PySCIPOpt-ML</a>. The full paper which introduces SurrogateLIB and the larger Python framework PySCIPOpt-ML is available at: <a href="https://arxiv.org/abs/2312.08074">https://arxiv.org/abs/2312.08074</a></p>
Data from: Book club programs in United States academic libraries: A survey
Open the record for dataset details and reuse information.
Massively parallel reporter assay for programmed ribosomal frameshifting on designed sequence libraries
GEO Series GSE145684. Homo sapiens. 4 samples. Type: Other.
Data from: Teratological and behavioral screening of the National Toxicology Program 91-compound library in zebrafish (Danio rerio)
To screen the tens of thousands of chemicals for which no toxicity data currently exists, it is necessary to move from in vivo rodent models to alternative models, such as zebrafish. Here, we used dechorionated Tropical 5D wildtype zebrafish embryos to screen a 91-compound library provided by the National Toxicology Program (NTP) for developmental toxicity. This library contained 86 unique chemicals that included negative controls, flame retardants, polycyclic aromatic hydrocarbons (PAHs), drugs, industrial chemicals and pesticides. Fish were exposed to five concentrations of each chemical or an equal amount of vehicle (0.5% DMSO) in embryo medium from 6 h post-fertilization (hpf) to 5 d post-fertilization (dpf). Fish were examined daily for mortality and teratogenic effects and photomotor behavior was assessed at 4 and 5 dpf. Of the five negative control compounds in the library, none caused mortality/teratogenesis, but two altered behavior. Chemicals provided in duplicate produced similar outcomes. Overall, 13 compounds caused mortality/teratology but not behavioral abnormalities, 24 only affected behavior, and 18 altered both endpoints, with behavior affected at concentrations that did not cause mortality/teratology (55/86 hits). Of the compounds that affected behavior, 52% caused behavioral abnormalities at either 4 or 5 dpf. Compounds within the same functional group caused different behavioral abnormalities, while similar behavioral patterns were caused by compounds from different groups. Our data suggest that behavior is a sensitive endpoint for developmental toxicity screening that integrates multiple modes of toxic action and is influenced by the age of the larval fish at the time of testing.
Feasibility and Impact of "ABCs of Diabetes" Self-Management Education Program at an Urban Public Library
ClinicalTrials.gov study NCT00822471. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Data from: Teratological and behavioral screening of the National Toxicology Program 91-compound library in zebrafish (Danio rerio)
Open the record for dataset details and reuse information.
Input files for test programs using the PDFI_SS software library
<p>These input files are used by the test programs, described in section 9 of the paper arXiv 1219.08301.</p>
Next Generation Sequencing Analysis of the single-cell Transcriptomes of the K562-Cas9 cell infected with lentiviral sgRNA library containing programmed scaffold RNA
GEO Series GSE144230. Homo sapiens. 75 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.