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Dataset results
24 results for “light acclimation”
Data from: Acclimation of mango (Mangifera indica cv. Calypso) to canopy light gradients - scaling from leaf to canopy
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Data from: Acclimation of leaf traits in seasonal light environments: are non-native species more plastic?
1. In temperate deciduous forests, understory light environments vary dramatically throughout spring, summer, and autumn due to tree canopy leaf display. This variability in light level is a physiological challenge for understory species that produce sun-adapted leaves in the spring before being shaded by the tree canopy. Similarly, some understory species display leaves late into autumn after the tree canopy senesces. 2. Many species in North American deciduous forests with extended leaf display are not native to North America. Since many non-native species have been shown to have greater plasticity than natives, we hypothesized that leaves of non-native species may be more plastic with respect to seasonal light changes than natives, and that this plasticity may allow them to assimilate more carbon in the same environment. 3. We measured leaf traits and photosynthetic capacity of 17 native and 13 non-native understory shrub species in a common garden in Syracuse, New York, during spring, summer, and autumn. We tested for the contribution of seasonal mean and variance (plasticity) of leaf traits to a species' average photosynthetic rate and total leaf production. We also analyzed the extent to which leaf adjustments depended on whether plants continued to produce new leaves over the growing season. 4. Leaf traits of both native and non-native species varied seasonally, but plasticity varied in extent and contribution to overall carbon gain. Non-native species had the highest seasonal plasticity, but, contrary to our hypothesis, such plasticity did not contribute to their overall carbon gain. However, leaf trait plasticity was adaptive for native species that continued to produce leaves throughout the year, primarily due to increases in quantum efficiency and electron transport rate in leaves produced mid-year compared to leaves produced early in the year. 5. Synthesis. Despite large adjustments in leaf traits across seasonal light environments for both native species and non-native species, we found little evidence that leaf-level plasticity drives non-native invasion or contributes strongly to annual carbon gain or productivity in understory species. Instead, differences in mean leaf traits across seasons are sufficient to explain carbon gain advantages of non-native woody species in deciduous forests.
Data from: Acclimation of leaf traits in seasonal light environments: are non-native species more plastic?
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Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [H2O2]
GEO Series GSE117297. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
DNA methylation contributes to plant acclimation to naturally fluctuating light (WGBS)
GEO Series GSE261532. Arabidopsis thaliana. 4 samples. Type: Methylation profiling by high throughput sequencing.
DNA methylation contributes to plant acclimation to naturally fluctuating light (RNA-Seq)
GEO Series GSE261531. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
Roles of close homologues SigB and SigD in heat and bright light acclimation of the cyanobacterium Synechocystis sp. PCC 6803
GEO Series GSE192357. Synechocystis sp. PCC 6803. 45 samples. Type: Expression profiling by high throughput sequencing.
Janus-faced nature of light in the cold acclimation processes of maize
GEO Series GSE107913. Zea mays. 12 samples. Type: Expression profiling by array.
Spliceosomal complex components are critical for the adjusting the C:N balance during high-light acclimation
GEO Series GSE236872. Arabidopsis thaliana. 20 samples. Type: Expression profiling by high throughput sequencing.
Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [Timecourse]
GEO Series GSE117296. Arabidopsis thaliana. 48 samples. Type: Expression profiling by high throughput sequencing.
Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [DPI]
GEO Series GSE117298. Arabidopsis thaliana. 24 samples. Type: Expression profiling by high throughput sequencing.
Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light
GEO Series GSE117300. Arabidopsis thaliana. 84 samples. Type: Expression profiling by high throughput sequencing.
The redox-sensitive regulatory module of cyclophilin 20-3, 2-cysteine peroxiredoxin and cysteine synthase in the high light acclimation response in Arabidopsis thaliana
GEO Series GSE94327. Arabidopsis thaliana. 40 samples. Type: Expression profiling by array.
DNA methylation contributes to plant acclimation to naturally fluctuating light
GEO Series GSE261533. Arabidopsis thaliana. 16 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
An Integrated Analysis of Molecular Acclimation to High Light in the Marine Diatom Phaeodactylum tricornutum
GEO Series GSE17237. Phaeodactylum tricornutum. 18 samples. Type: Expression profiling by array.
Light quantity impacts early response to cold and cold acclimation in young leaves of Arabidopsis
GEO Series GSE278942. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing.
Arabidopsis thaliana FIBRILLIN6 is involved in acclimation to moderate light stress and cadmium tolerance
GEO Series GSE125515. Arabidopsis thaliana. 6 samples. Type: Expression profiling by high throughput sequencing.
Comparison of transcript profiles of acclimated and de-acclimated Arabidopsis plants to high light, cold and heat.
GEO Series GSE125950. Arabidopsis thaliana. 102 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic choreography in response to light quality variation reveals metabolic acclimation in marine Nannochloropsis oceanica.
GEO Series GSE139615. Nannochloropsis oceanica. 15 samples. Type: Expression profiling by high throughput sequencing.
Temporal analysis of physiological and transcriptome responses during high light exposure that lead to dynamic acclimation in Arabidopsis
GEO Series GSE78251. Arabidopsis thaliana. 100 samples. Type: Expression profiling by array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.