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Dataset results
61 results for “light sheet”
Four angle fused dataset for Ascidian embryo imaged via light sheet
<p>Original dataset imaged and published here: </p> <pre>DOI: 10.6084/m9.figshare.8235473.v1</pre> <p>This dataset is provided as Raw dataset for training deep neural networks for segmentation tasks. The binary masks and the integer labels are provided separately.</p>
Single objective light-sheet acquired large-scale 3D dataset
<p>This dataset covers Fig. 5 of the following publication:</p> <p>Title: Tilt-invariant scanned oblique plane illumination microscopy for large-scale volumetric imaging<br> Authors: Manish Kumar and Yevgenia Kozorovitskiy <br> Optics Letters Vol. 44, Issue 7, pp. 1706-1709 (2019)<br> https://doi.org/10.1364/OL.44.001706</p> <p>Briefly: The sample imaged is a Thy1GFP expressing transgenic mice brain slice - fixed and coverslipped. No clearing was performed for these.</p> <p>See "readme.txt" for additional info and details about how to use "shearNscaleObliq" file.</p>
Broca's Area Light-Sheet Microscopy
<p>Example dataset containing light-sheet selective plane illumination microscopy (SPIM) data to illustrate BIDS convention.<br> BIDS version 1.7.0</p>
(10)-Strobl2022A-DS0008 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(10)-Strobl2022A-DS0008 – <em>Ceratitis capitata</em> TREhs43-hid<sup>Ala5</sup>_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(10)-Strobl2022A-DS0004 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(10)-Strobl2022A-DS0004 – <em>Ceratitis capitata</em> TREhs43-hid<sup>Ala5</sup>_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(10)-Strobl2022A-DS0001 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(10)-Strobl2022A-DS0001 – <em>Ceratitis capitata</em> TREhs43-hid<sup>Ala5</sup>_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(10)-Strobl2022A-DS0003 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(10)-Strobl2022A-DS0003 – <em>Ceratitis capitata</em> TREhs43-hid<sup>Ala5</sup>_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(10)-Strobl2022A-DS0002 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(10)-Strobl2022A-DS0002 – <em>Ceratitis capitata</em> TREhs43-hid<sup>Ala5</sup>_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(10)-Strobl2022A-DS0007 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(10)-Strobl2022A-DS0007 – <em>Ceratitis capitata</em> TREhs43-hid<sup>Ala5</sup>_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(10)-Strobl2022A-DS0009 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(10)-Strobl2022A-DS0009 – <em>Ceratitis capitata</em> TREhs43-hid<sup>Ala5</sup>_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(10)-Strobl2022A-DS0006 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(10)-Strobl2022A-DS0006 – <em>Ceratitis capitata</em> TREhs43-hid<sup>Ala5</sup>_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(10)-Strobl2022A-DS0005 – Ceratitis capitata TREhs43-hid^Ala5_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(10)-Strobl2022A-DS0004 – <em>Ceratitis capitata</em> TREhs43-hid<sup>Ala5</sup>_F1m2 long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(05)-Strobl2018A-DS0001 – Tribolium castaneum AGOC{Zen1'#O(LA)-mEmerald} #2 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(05)-Strobl2018A-DS0001 – <em>Tribolium castaneum</em> AGOC{Zen1'#O(LA)-mEmerald} #2 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(05)-Strobl2018A-DS0003 – Tribolium castaneum AGOC{ARP5'#O(LA)-mEmerald} #2 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(05)-Strobl2018A-DS0003 – <em>Tribolium castaneum</em> AGOC{ARP5'#O(LA)-mEmerald} #2 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(05)-Strobl2018A-DS0002 – Tribolium castaneum AGOC{ARP5'#O(LA)-mEmerald} #1 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(05)-Strobl2018A-DS0002 – <em>Tribolium castaneum</em> AGOC{ARP5'#O(LA)-mEmerald} #1 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(06)-He2019A-DS0003 – Tribolium castaneum AGOC #6 subline × foxQ2-5' line long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(06)-He2019A-DS0003 – <em>Tribolium castaneum</em> AGOC #6 subline × foxQ2-5' line long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
(06)-He2019A-DS0002 – Tribolium castaneum foxQ2-5' line × AGOC #6 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(06)-He2019A-DS0002 – <em>Tribolium castaneum</em> foxQ2-5' line × AGOC #6 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy</p>
3D super-resolution datasets associated with the paper "Whole-cell multi-target single-molecule super-resolution imaging in 3D with microfluidics and a single-objective tilted light sheet"
<p>3D single-molecule super-resolution datasets corresponding to reconstructions shown in <em>Whole-cell multi-target single-molecule super-resolution imaging in 3D with microfluidics and a single-objective tilted light sheet</em> by Saliba & Gagliano, Gustavsson et. al.</p>
(09)-Pereyra2021A-DS0001--DS0003 – Three Tribolium castaneum long-term live imaging datasets of embryonic development acquired with light sheet fluorescence microscopy
<p>(09)-Pereyra2021A-DS0001--DS0003 – Three <em>Tribolium castaneum</em> long-term live imaging datasets of embryonic development acquired with light sheet fluorescence microscopy</p>
(08)-Strobl2021A-DS0002 – Tribolium castaneum ACOS{ATub'H2B-mRuby} #1 subline long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
<p>(08)-Strobl2021A-DS0002 – <em>Tribolium castaneum</em> ACOS{ATub'H2B-mRuby} #1 subline long-term live imaging data of embryonic development acquired with light sheet fluorescence microscopy</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.