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Dataset results
6 results for “light-sheet microscopy”
Broca's Area Light-Sheet Microscopy
<p>Example dataset containing light-sheet selective plane illumination microscopy (SPIM) data to illustrate BIDS convention.<br> BIDS version 1.7.0</p>
Dataset for Adaptive Light-Sheet Fluorescence Microscopy with a Deformable Mirror for Video-Rate Volumetric Imaging
<p>1. Underlying data of figures in the paper </p> <p>2. Background images used to process the experimental data</p> <p>3. image stack of 250 nm beads</p> <p>4. image stack of sunflower pollen grains</p> <p>5. image stacks and videos of Fluo-4 labelled cells</p> <p>6. image stacks and videos of CMO-labelled cells</p> <p>The data is organised according to the figures they are related to in the following publication:</p> <p> </p> <p><a href="https://aip.scitation.org/author/Hong%2C+Wenzhi">Wenzhi Hong</a><em>, </em><a href="https://aip.scitation.org/author/Wright%2C+Terry">Terry Wright</a><em>, </em><a href="https://aip.scitation.org/author/Sparks%2C+Hugh">Hugh Sparks</a><em>, </em><a href="https://aip.scitation.org/author/Dvinskikh%2C+Liuba">Liuba Dvinskikh</a><em>, </em><a href="https://aip.scitation.org/author/MacLeod%2C+Ken">Ken MacLeod</a><em>, </em><a href="https://aip.scitation.org/author/Paterson%2C+Carl">Carl Paterson</a><em>, and </em><a href="https://aip.scitation.org/author/Dunsby%2C+Chris">Chris Dunsby</a> </p> <p>, "Adaptive light-sheet fluorescence microscopy with a deformable mirror for video-rate volumetric imaging", Appl. Phys. Lett. 121, 193703 (2022) <a href="https://doi.org/10.1063/5.0125946">https://doi.org/10.1063/5.0125946</a></p>
Supplementary videos for the "Remote-refocusing light-sheet fluorescence microscopy enables 3D imaging of electromechanical coupling of hiPSC-derived and adult cardiomyocytes in co-culture" manuscript
<p>Supplementary videos for preprint manuscript: </p> <p><em>Remote-refocusing light-sheet fluorescence microscopy enables 3D imaging of electromechanical coupling of hiPSC-derived and adult cardiomyocytes in co-culture</em><br> Liuba Dvinskikh, Hugh Sparks, Liliana Brito, Kenneth T MacLeod, Sian E Harding, Christopher Dunsby<br> bioRxiv 2023.01.28.526043; doi: https://doi.org/10.1101/2023.01.28.526043</p> <p>All videos have been rendered with JPEG compression.</p> <p>Shortened video captions (Please see supplementary information document for full caption)<br> <strong>Video 1:</strong> 3D LSFM timelapse of hiPSC-CM undergoing spontaneous calcium transients. <br> <strong>Video 2:</strong> Widefield transillumination timelapse of hiPSC-CM and adult-CM <br> <strong>Video 3:</strong> Widefield fluorescence timelapse of hiPSC-CM and adult CM with synchronized spontaneous calcium transients. <br> <strong>Video 4a:</strong> 3D LSFM timelapse of hiPSC-CM and adult-CM day 1 co-culture undergoing synchronized spontaneous transients. <br> <strong>Video 4b</strong>: Depth-encoded MIPs of the 3D LSFM timelapse of hiPSC-CM and adult-CM day 1 co-culture undergoing synchronized spontaneous transients. <br> <strong>Video 5a:</strong> 3D LSFM timelapse of hiPSC-CM and adult-CM day 1 co-culture undergoing synchronized spontaneous transients in a sample without NBleb. <br> <strong>Video 5b</strong>: Depth-encoded MIPs of the 3D LSFM timelapse of hiPSC-CM and adult-CM day 1 co-culture without NBleb undergoing synchronized spontaneous transients. <br> <strong>Video 6a</strong>: 3D LSFM timelapse of hiPSC-CM and adult-CM co-culture undergoing synchronized spontaneous transients in a sample treated with NBleb. <br> <strong>Video 6b:</strong> Depth-encoded MIPs of the 3D LSFM timelapse of hiPSC-CM and adult-CM day 1 co-culture with NBleb undergoing synchronized spontaneous transients. <br> <strong>Video 7a:</strong> 3D LSFM timelapse of hiPSC-CM and adult-CM day 0 co-culture undergoing synchronized spontaneous transients in a sample without NBleb. <br> <strong>Video 7b: </strong>Depth-encoded MIPs of the 3D LSFM timelapse of hiPSC-CM and adult-CM day 0 co-culture without NBleb. </p> <p> </p>
Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy
Open the record for dataset details and reuse information.
Code and dataset for: Cell position fates and collective fountain flow in bacterial biofilms revealed by light-sheet microscopy
<p>Dataset and codes for: Cell position fates and collective fountain flow in bacterial biofilms revealed by light-sheet microscopy.</p> <p>Published online via First Release, <strong>11 June 2020</strong></p> <p>B. Qin et al., Science, 10.1126/science.abb8501 (2020).</p> <p> </p>
Light-sheet microscopy enabled by a miniaturized plane illuminator
<p>Light-sheet microscopy enabled by a miniaturized plane illuminator </p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.