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ABG-IMRHT and Ames-2000K IR line lists for N2O as reported in "Accurate N2O IR Line Lists with Consistent Empirical Line Positions: ABG-IMRHT and Ames-2000K"
<p><strong>[2025-06-17, v2.0</strong>, updated from v1.1 (<a href="https://doi.org/10.5281/zenodo.14834513">10.5281/zenodo.14834513</a>)]<br>(1). This upgraded version is recommended for analysis involving B1b or ABG(-IMRHT) related line lists, or E' > 10,000 cm<sup>-1</sup>. <br>(2). Energy level lists computed on the B1b PES and related 296K ABG-IMRHT line intensity and line lists, and B1b-based 1000-3000K line list files have been updated, along with n2olist.f90.v1.4. <br>(3). The full 296 K IR line lists of <strong>all 12 stable isotopologues</strong> are provided in "n2o.296K.ABG-IMRHT.20250602.with.broadening.dat.v5corrected.100pct-abundance.xz", in which the line intensities assume 100% abundance for every isotopologue.<br>(4). Please note that the B1b PES-based energy levels in "empirical.corrections.for.ABG-IMRHT.zip" are still valid, but the B1b PES based energy levels are not updated in the files inside that .zip. </p> <p>[<strong>Link to <a href="https://www.sciencedirect.com/science/article/pii/S0022407325001645">the N2O paper</a> </strong>published at JQSRT (2025) 343, 109502, part of VSI:HITRAN2024, doi:<a href="https://doi.org/10.1016/j.jqsrt.2025.109502">10.1016/j.jqsrt.2025.109502</a>]</p> <p>[Updated from v1.0 (<a href="https://doi.org/10.5281/zenodo.14174307">10.5281/zenodo.14174307</a>). The J=151-210 transitions of <sup>14</sup>N<sub>2</sub><sup>16</sup>O were missing from v1.0 files ]</p> <p><strong>1. Second generation of Ames-296K IR line list for "natural" Nitrous Oxide (N<sub>2</sub>O), denoted ABG-IMRHT</strong>, which was computed from Ames-B1b PES refinement (using Benjamin Schröder's ab initio PES Comp I, doi:10.1515/zpch-2015-0622) and 2023 dmsG-10K accurately fitted from CCSD(T)/aug-cc-pV(T,Q,5)Z dipoles. In this major upgrade to Ames-296K N<sub>2</sub>O line list (10.1080/00268976.2023.2232892 and 10.5281/zenodo.7888194), rovibrational energy levels computed from NOSL-296 EH model were adopted to match and replace ~100,000 <sup>14</sup>N<sub>2</sub><sup>16</sup>O levels. More consistent empirical corrections are determined for multiple isotopologues from comparison with RITZ (IAO), MARVEL (ExoMol), HITRAN, and JPL datasets. The ABG-IMRHT line list provides the most reliable and consistent IR intensity predictions and accurate line positions in the range of 0 - 10,000 cm<sup>-1</sup>. All 12 stable isotopologues are included. </p> <p><strong>2. Ames-2000K</strong> IR line list provides complete, reliable and consistent IR predictions in the 0 - 15,000 cm<sup>-1</sup> range. It includes transitions of 12 isotopologues. Their intensities are scaled by corresponding terrestrial "natural" abundances. Ames-2000K is a composite list, including 4 component lists, to achieve better accuracy and reliability needs at both shorter and longer wavelengths: </p> <ul> <li>#1. a hot line list of <sup>14</sup>N<sub>2</sub><sup>16</sup>O, computed on Ames-1 PES and 2023 dmsG-wgt2d, J'<210, E'<25,000 cm<sup>-1</sup>, T=1000 / 1500 / 2000 / 3000 K. It occupies 24 GB in compressed .xz format. </li> <li>#2. 1000 K line lists of #2-#12 minor isotopologues, computed on Ames-1 PES and DMS, J'<150, E'<0.125 au - zpe (iso 2-6) or 0.08 -0.10 au - zpe (iso 7-12), S<sub>1000K </sub>> 10<sup>-34</sup> cm/molecule, size-reduction with 99.9% intensity conservation in cm<sup>-1</sup> bins. </li> <li>#3. a hot line list of <sup>14</sup>N<sub>2</sub><sup>16</sup>O, computed on Ames-B1b PES and 2023 dmsG-10Kcm<sup>-1</sup>, J'<150, E'<16,000 cm<sup>-1</sup>, T=1000 / 1500 / 2000 / 3000 K.</li> <li>#4. ABG-IMRHT IR line list at 296 K, J'<150, E'<16,000 cm<sup>-1</sup>, with best empirical line positions and highly consistent intensity predictions up to 10,000 cm<sup>-1</sup>. Coverage beyond 10,000 cm<sup>-1 </sup>is limited to strong lines.</li> </ul> <p><strong>3. List of files:</strong> (decompress .xz files first, "xz -dkf -T0 file.xz")</p> <ul> <li>IAO_N2O_levels.tar.xz: rovibrational energy levels of 6 N<sub>2</sub>O isotopologues, as computed using global Effective Hamiltonian (EH) models developed by Dr. Sergey Tashkun from IAO (Institute of Atmospheric Optics, Tomsk, Russia, <a href="https://www.iao.ru/">https://www.iao.ru/</a>). <br><br></li> <li>N2O.Ames-B1b.PES.and.Ames-2023.DMS.zip: Ames-B1b PES subroutine & coefficient file, see the note in n2opes2.f90; Ames 2023 dmsG subroutine and coefficients for fits up to 10K/12K/15K/17K/20K/25K cm<sup>-1</sup>, along with fitting residuals and compared to Ames-1 style (dmsC) coeffs and residuals. The geometry set has ~80 points in each 100 cm<sup>-1</sup>. <br><br></li> <li>n2olist.f90.v1.4: the main Fortran program for Ames-2000K generation, customizable, see the note at its beginning. <br>[ default Ames-2000K = Ames-1 (12 iso) + [B1b (446) + ABG-IMRHT (12 iso)] if (E'<15,000 cm-1 & J<=150) ]<br><br></li> <li>empirical.corrections.for.ABG-IMRHT.zip: subroutine and paired/corrected energy level lists used in the empirical correction of energy levels computed on B1b PES [<em>this file is not updated from v1.1 to v2.0</em>]<br><br></li> <li>n2o.partition.1-4000K.iso.1-12.scaled: partition sum for 12 isotopologues, input file required by n2olist.f90, excluding g_n<br>n2o.partition.1-4000K.iso.1-12.scaled.with.degeneracy.txt: same as above, g_n included, see the note inside<br><br></li> <li>list.of.n2o.xz.files : list of .xz files to read/regenerate from, under subdir "xz", input file required by n2olist.f90<br>ames.n2o.xx000-yy000.cm-1.xz: compressed data files for Ames-2000K (line list component #1+#2)<br><br></li> <li>n2o.iso1-12.levels.Ames-1.dat.xz: energy levels of 12 N<sub>2</sub>O isotopologues on Ames-1 PES, input file required by n2olist.f90<br><br></li> <li>n2o.446.B1b-PES.levels.xz: energy levels of <sup>14</sup>N<sub>2</sub><sup>16</sup>O computed on Ames-B1b PES, input file to n2olist.f90<br><br></li> <li>n2o.446.B1b-dmsG10K.1000K-3000K.Eup16K.0-10Kcm-1.compressed.xz: data file for <sup>14</sup>N<sub>2</sub><sup>16</sup>O hot list on Ames-B1b and dms 2023-G10K (component #3), input file required by n2olist.f90<br>n2o.446.B1b-dmsG10K.1000K-3000K.Eup16K.0-10Kcm-1.dat.xz: independent line list (component #3)<br><br></li> <li>n2o.iso1-12.levels.ABG-IMRHT.dat.xz: energy levels in ABG-IMRHT list, with empirical corrections included, input file required by n2olist.f90</li> <li>n2o.296K.ABG-IMRHT.20250602.dat.v5.corrected.xz: Latest Ames-296K line list with empirical energy level corrections (component #4), input file for n2olist.f90<br>n2o.296K.ABG-IMRHT.20250602.with.broadening.dat.v5.corrected.xz: same as above, in HITRAN format, including line-broadening parameters<br><br></li> <li>n2o.296K.ABG-IMRHT.20250602.dat.v5corrected.100pct-abundance.xz: Latest Ames-296K line list with empirical energy level corrections, including the full set of IR transitions for <strong>12 stable isotopologues, assuming 100% abundannce </strong>for every isotopologue, and 1E-31 cm/molecule intensity cut-off at 296 K.</li> <li>n2o.296K.ABG-IMRHT.20250602.with.broadening.dat.v5corrected.100pct-abundance.xz: same as above, in HITRAN format, including line-broadening parameters<br><br></li> <li>ames.n2o.intensity.xz: line count and intensity sum (original, selected, iso #1 and iso #2-12) in each 0.01 cm<sup>-1</sup> bins at 296 K, 1000 K, 1500 K, 2000 K, and 3000 K, for reference and statistics, optional input file to n2olist.f90<br><br></li> <li>ames.n2o.sint.reductions.xz: A check-point file during Ames-2000K file generation, for reference only. including # of lines (total & selected), intensity sum (total, iso #1, iso #2-12), and intensity retention ratio in each 0.01 cm<sup>-1</sup> bins for total, iso #1, and iso #2-12.<br><br></li> </ul> <p><strong>4. List of 12 isotopologues</strong>, abundances adopted, and number of lines in ABG-IMRHT and Ames-2000K line list, <br>[updated 2025-06-17 v2.0: the #lines in ABG-IMRHT are updated to S(296K) cut-off at 1E-31 cm/molecule, instead of 5E-31]</p> <table> <tbody> <tr> <td>#</td> <td>ISO</td> <td>abundance</td> <td># lines in ABG-IMRHT</td> <td># lines in Ames-2000K</td> </tr> <tr> <td>1</td> <td>446</td> <td>0.990333</td> <td>1388017</td> <td>3014643103</td> </tr> <tr> <td>2</td> <td>456</td> <td>3.64093E-3</td> <td>375541</td> <td>97932924</td> </tr> <tr> <td>3</td> <td>546</td> <td>3.64093E-3</td> <td>411353</td> <td>118432059</td> </tr> <tr> <td>4</td> <td>448</td> <td>1.98582E-3</td> <td>377552</td> <td>88169721</td> </tr> <tr> <td>5</td> <td>447</td> <td>3.69280E-4</td> <td>238921</td> <td>40212389</td> </tr> <tr> <td>6</td> <td>556</td> <td>1.33858E-5</td> <td>93933</td> <td>7534736</td> </tr> <tr> <td>7</td> <td>548</td> <td>7.30080E-6</td> <td>93674</td> <td>5583963</td> </tr> <tr> <td>8</td> <td>458</td> <td>7.30080E-6</td> <td>86446</td> <td>4995485</td> </tr> <tr> <td>9</td> <td>547</td> <td>1.35765E-6</td> <td>55360</td> <td>2588347</td> </tr> <tr> <td>10</td> <td>457</td> <td>1.35765E-6</td> <td>50754</td> <td>2275332</td> </tr> <tr> <td>11</td> <td>558</td> <td>2.68412E-8</td> <td>15814</td> <td>500190</td> </tr> <tr> <td>12</td> <td>557</td> <td>4.99134E-9</td> <td>8537</td> <td>274623</td> </tr> <tr> <td> </td> <td>Total</td> <td>1.00000069</td> <td>3195902</td> <td>3383142872</td> </tr> </tbody> </table> <p>5. This project is funded by NASA Grant 18-APRA18-0013 through NASA/SETI Institute Co-operative Agreement 80NSSC20K1358. Resources supporting this work were provided by the NASA High-End Computing (HEC) Program through the NASA Advanced Supercomputing (NAS) Division at Ames Research Center.</p>
Monthly and Annual contour lines of the zero and the positive maximum of the Wind Stress Curl over Western North Atlantic during 1980-2019 and the Gulf Stream path during 1993-2019.
<p>This dataset includes multiple fields: (i) files for monthly and annual fields for the max curl line and the zero curl line at 0.1 degree longitudinal resolutions; (ii) files for monthly and annual GS path obtained from Altimetry and originally processed by Andres (2016) at 0.1 degree longitudinal resolution. The maximum curl line (MCL) and the zero curl line (ZCL) calculations are briefly described here and are based on the original wind data (at 1.25 x 1.25 degree) provided by the Japanese reanalysis (JRA-55; Kobayashi et al., 2015) and available at https://zenodo.org/record/8200832 (Gifford et al. 2023). For details see Gifford, 2023. </p> <p>The wind stress curl (WSC) fields used for the MCL and ZCL calculations extend from 80W to 45W and 30N to 45N at the 1.25 by 1.25-degree resolution. The MCL is defined as the maximum WSC values greater than zero within the domain per 1.25 degree longitude. As such, it is a function of longitude and is not a constant WSC value unlike the zero contour. High wind stress curl values that occurred near the coast were not included within this calculation. After MCL at the 1.25 resolution was obtained the line was smoothed with a gaussian smoothing and interpolated on to a 0.1 longitudinal resolution. The smoothed MCL lines at 0.1 degree resolution are provided in separate files for monthly and annual averages (2 files). Similarly, 2 other files (monthly and annual) are provided for the ZCL. </p> <p>Like the MCL, the ZCL is a line derived from 1.25 degree longitude throughout the domain under the condition that it's the line of zero WSC. The ZCL is constant at 0 and does not vary spatially like the MCL. If there are more than one location of zero curl for a given longitude the first location south of the MCL is selected. Similar to the MCL, the ZCL was smoothed with a gaussian smoothing and interpolated on to a 0.1 longitudinal resolution. </p> <p>The above files span the years from 1980 through 2019. So, the monthly files have 480 months starting January 1980, and the annual files have 40 years of data. The files are organized with each row being a new time step and each column being a different longitude. Therefore, the monthly MCL and ZCL files are each 480 x 351 for the 0.1 resolution data. Similarly, the annual files are 40 x 351 for the 0.1 degree resolution data. </p> <p><strong>Note that the monthly MCLs and ZCLs are obtained from the monthly wind-stress curl fields. The annual MCLs and ZCLs are obtained from the annual wind-stress curl fields.</strong></p> <p>Since the monthly curl fields preserves more atmospheric mesoscales than the annual curl fields, the 12-month average of the monthly MCLs and ZCLs will not match with the annual MCLs and ZCLs derived from the annual curl field. The annual MCLs and ZCLs provided here are obtained from the annual curl fields and representative metrics of the wind forcing on an annual time-scale. </p> <p>Furthermore, the monthly Gulf Stream axis path (25 cm isoheight from Altimeter, reprocessed by Andres (2016) technique) from 1993 through 2019 have been made available here. A total of 324 monthly paths of the Gulf Stream are tabulated. In addition, the annual GS paths for these 27 years (1993-2019) of altimetry era have been put together for ease of use. The monthly Gulf Stream paths have been resampled and reprocessed for uniqueness at every 0.1 degree longitude from 75W to 50W and smoothed with a 100 km (10 point) running average via matlab. The uniqueness has been achieved by using Consolidator algorithm (D’Errico, 2023). </p> <p>Each monthly or annual GS path has 251 points between 75W to 50W at 0.1 degree resolution. </p>
Text-fig. 1. a: Po Plain and foothills of the Northern Apennine in Northern Italy (inset) with the location of Oriolo (black star) and other Early and Middle Pleistocene plant localities, Enza and Stirone. Red lines indicate the frontal thrust arcs (modified from Martinetto et al. 2015). b: The "La Salita" section, Oriolo and chronology of the two "Sabbie gialle" cycles based on large mammals and palaeomagnetic correlation (modified from Toniato et al. 2017; IMMS 2020* [Italian Mediterranean Marine Stages] updated from Cohen and Gibbars 2020; GTS 2021* [Global Time Scale] updated from Head et al. 2021). c: Quarry "La Salita", Oriolo, in 1987. Main unconformities (U) separating the two "Sabbie gialle" cycles and terrestrial deposits on top are shown. Leaf symbols indicate the positions of some of the layers rich in fossil leaves (photo by G. B. Vai, modified). d: Surroundings of Faenza with the location of Oriolo and adjacent coeval sites yielding plant macrofossils. in The Late Early Pleistocene Flora Of Oriolo, Faenza (Italy): Assembly Of The Modern Forest Biome
Text-fig. 1. a: Po Plain and foothills of the Northern Apennine in Northern Italy (inset) with the location of Oriolo (black star) and other Early and Middle Pleistocene plant localities, Enza and Stirone. Red lines indicate the frontal thrust arcs (modified from Martinetto et al. 2015). b: The "La Salita" section, Oriolo and chronology of the two "Sabbie gialle" cycles based on large mammals and palaeomagnetic correlation (modified from Toniato et al. 2017; IMMS 2020* [Italian Mediterranean Marine Stages] updated from Cohen and Gibbars 2020; GTS 2021* [Global Time Scale] updated from Head et al. 2021). c: Quarry "La Salita", Oriolo, in 1987. Main unconformities (U) separating the two "Sabbie gialle" cycles and terrestrial deposits on top are shown. Leaf symbols indicate the positions of some of the layers rich in fossil leaves (photo by G. B. Vai, modified). d: Surroundings of Faenza with the location of Oriolo and adjacent coeval sites yielding plant macrofossils.
Text-fig. 2. Representative most parsimonious trees obtained after addition of Liliacidites to (A) the D&E tree (Text-fig. 1) and (B) the J/M tree, with relationships among major clades based on the plastid genome analyses of Jansen et al. (2007) and Moore et al. (2007). Thicker lines indicate all most parsimonious (MP), one step less parsimonious (MP+1), and two step less parsimonious (MP+2) positions for Liliacidites. Abbreviations as in Text-fig. 1. in Early Cretaceous Monocots: A Phylogenetic Evaluation
Text-fig. 2. Representative most parsimonious trees obtained after addition of Liliacidites to (A) the D&E tree (Text-fig. 1) and (B) the J/M tree, with relationships among major clades based on the plastid genome analyses of Jansen et al. (2007) and Moore et al. (2007). Thicker lines indicate all most parsimonious (MP), one step less parsimonious (MP+1), and two step less parsimonious (MP+2) positions for Liliacidites. Abbreviations as in Text-fig. 1.
Text-fig. 1. Sketch of the Bohemian Massif and the Czech Republic (dash-and-dot line) with marked position of the Krkonoše Piedmont Basin (grey). Modified after Martínek et al. 2006. in Permian Fauna Of The Krkonoše Piedmont Basin (Bohemian Massif, Central Europe)
Text-fig. 1. Sketch of the Bohemian Massif and the Czech Republic (dash-and-dot line) with marked position of the Krkonoše Piedmont Basin (grey). Modified after Martínek et al. 2006.
Figure. Constrained ordination plot as produced from canonical correspondence analysis (CCA). The variability of environmental variables is summarized on Axis 1 and Axis 2 of the constrained biplot, explaining the variability of the trophic groups included in the red fox's diet. Trophic groups are shown with black line (unfilled) pyramids, whereas environmental variables are shown with black filled pyramids. Proximity and distance of response centroids to predictor centroids indicate positive and negative correlations between them, respectively. in Factors affecting the diet of the red fox (Vulpes vulpes) in a heterogeneous Mediterranean landscape
Figure. Constrained ordination plot as produced from canonical correspondence analysis (CCA). The variability of environmental variables is summarized on Axis 1 and Axis 2 of the constrained biplot, explaining the variability of the trophic groups included in the red fox's diet. Trophic groups are shown with black line (unfilled) pyramids, whereas environmental variables are shown with black filled pyramids. Proximity and distance of response centroids to predictor centroids indicate positive and negative correlations between them, respectively.
Study of Nilotinib as First Line Treatment in Philadelphia Chromosome Positive(Ph+) Chronic Myelogenous Leukemia in Chronic Phase (CML-CP)
ClinicalTrials.gov study NCT01274351. IPD Sharing: YES. Countries: 1. Publications: 2.
LUX-Lung 7: A Phase IIb Trial of Afatinib(BIBW2992) Versus Gefitinib for the Treatment of 1st Line EGFR Mutation Positive Adenocarcinoma of the Lung
ClinicalTrials.gov study NCT01466660. IPD Sharing: Not stated. Countries: 14. Publications: 3.
Real World Utilization and Outcomes With Dacomitinib First Line Treatment for EGFR Mutation-positive Advanced Non Small Cell Lung Cancer Among Asian Patients - A Multi Center Chart Review
ClinicalTrials.gov study NCT04609319. IPD Sharing: NO. Countries: 3. Publications: 1.
A Study of Zolbetuximab (IMAB362) Plus CAPOX Compared With Placebo Plus CAPOX as First-line Treatment of Subjects With Claudin (CLDN) 18.2-positive, HER2-negative, Locally Advanced Unresectable or Met
ClinicalTrials.gov study NCT03653507. IPD Sharing: YES. Countries: 18. Publications: 2.
Assess Efficacy & Safety of Selumetinib in Combination With Docetaxel in Patients Receiving 2nd Line Treatment for v-Ki-ras2 Kirsten Rat Sarcoma Viral Oncogene Homolog (KRAS) Positive NSCLC
ClinicalTrials.gov study NCT01933932. IPD Sharing: YES. Countries: 26. Publications: 2.
A Study of Pertuzumab in Combination With Trastuzumab (Herceptin) and a Taxane in First-Line Treatment in Participants With Human Epidermal Growth Factor 2 (HER2)-Positive Advanced Breast Cancer
ClinicalTrials.gov study NCT01572038. IPD Sharing: Not stated. Countries: 39. Publications: 1.
Dasatinib In Combination With Trastuzumab And Paclitaxel In First Line Treatment Of Her2-Positive MBC Patients
ClinicalTrials.gov study NCT01306942. IPD Sharing: Not stated. Countries: 1. Publications: 2.
A Study Of PF-05280014 [Trastuzumab-Pfizer] Or Herceptin® [Trastuzumab-EU] Plus Paclitaxel In HER2 Positive First Line Metastatic Breast Cancer Treatment (REFLECTIONS B327-02)
ClinicalTrials.gov study NCT01989676. IPD Sharing: YES. Countries: 24. Publications: 3.
Two Different Schedules of Palbociclib + Second Line Endocrine Therapy in Estrogen Receptor Positive, HER2 Neg Advanced/Metastatic Breast Cancer
ClinicalTrials.gov study NCT02630693. IPD Sharing: YES. Countries: 1. Publications: 1.
Testing the Drug Atezolizumab or Placebo With Usual Therapy in First-Line HER2-Positive Metastatic Breast Cancer
ClinicalTrials.gov study NCT03199885. IPD Sharing: YES. Countries: 2. Publications: 1.
Study Of Letrozole With Or Without Palbociclib (PD-0332991) For The First-Line Treatment Of Hormone-Receptor Positive Advanced Breast Cancer
ClinicalTrials.gov study NCT00721409. IPD Sharing: YES. Countries: 12. Publications: 8.
A Study Of PF-05280586 (Rituximab-Pfizer) Or MabThera® (Rituximab-EU) For The First-Line Treatment Of Patients With CD20-Positive, Low Tumor Burden, Follicular Lymphoma (REFLECTIONS B328-06)
ClinicalTrials.gov study NCT02213263. IPD Sharing: YES. Countries: 30. Publications: 2.
Clinical Trial of YH25448(Lazertinib) as the First-line Treatment in Patients With EGFR Mutation Positive Locally Advanced or Metastatic NSCLC (LASER301)
ClinicalTrials.gov study NCT04248829. IPD Sharing: YES. Countries: 13. Publications: 2.
Efficacy, Safety, Tolerability of Gefitinib as 1st Line in Caucasian Patients With EGFR Mutation Positive Advanced NSCLC
ClinicalTrials.gov study NCT01203917. IPD Sharing: Not stated. Countries: 13. Publications: 1.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.