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25 results for “manuscript database”
Database Manuscript Temperature and moisture are minor drivers of regional-scale soil organic carbon dynamics - Gonzalez Dominguez et al
<p>The database contained the data used in the manuscript <strong>Temperature and moisture are minor drivers of regional-scale soil organic carbon dynamics, by Gonzalez Dominguez et al. </strong></p>
etymologiae.ms: a database of the early medieval manuscripts of the Etymologiae of Isidore of Seville
<p>The Innovating Knowledge project is currently developing an online manuscript database that will bring together up-to-date information about the roughly 450 early medieval codices transmitting the most important medieval Latin encyclopaedia, the Etymologiae of Isidore of Seville. The objective of the database: not only to replace the outdated manuscript handlist of G.E. Anspach (the 1940s), but to work towards improved standards of digital publishing of manuscript data.</p> <p>Learn more about the Innovating Knowledge project at: <a href="https://www.youtube.com/redirect?redir_token=QUFFLUhqbkc1cnIySWVLTHhMNUxIMDFkVWE3UzZneUh5d3xBQ3Jtc0tseVhpZHozVkRMWG5lVTRlVExJRjc0THFnY2ItMGlYWWU0YWZPWUVkdEJkcnBpcmFrdEFRTGJ2RG1DUzJLZ0tBT0F0NUM4Z3ZuY3ZaOVRHMGRkdmI1X1JzbVUxRl94MWpkbUVnSHdzMnlVNHUyMHFKdw%3D%3D&q=https%3A%2F%2Fmittelalter.hypotheses.org%2F21234&event=video_description&v=IBIRfBHK0pU">https://mittelalter.hypotheses.org/21234</a></p> <p>Presented as a Lightning Talk for the Schoenberg Symposium 2020</p>
Dataset (Global C-responses for CSES and CSES+Swarm+Obs database) presented in the recently submitted AGU manuscript "Electrical conductivity of mantle transition zone and water content revealed by the magnetic data of China Seismo-electromagnetic Satellite".
<p>Dataset (Global C-responses for CSES and CSES+Swarm+Obs database) presented in the recently submitted AGU manuscript "Electrical conductivity of mantle transition zone and water content revealed by the magnetic data of China Seismo-electromagnetic Satellite".</p>
Database Figure 6 manuscript GCB 23-1473.R1 P_Pacheco
<p>Figure 6 of the article corresponding to annual mean values of NEE (g CO2 m-2 y-1) obtained from various studies in relation to different direct anthropogenic disturbances performed on Sphagnum, and management actions that favor moss reestablishment </p>
Databases generated for Manuscript titled "Quantifying downward radiative fluxes from nighttime Martian water ice clouds: Applications to thermal modeling of surface temperatures"
<p>Databases generated for manuscript "<strong>Quantifying downward radiative fluxes from nighttime Martian water ice clouds: Applications to thermal modeling of surface temperatures</strong>"</p> <p>There are two zip files containing generated databases:</p> <p>The zip file titled "database.zip" contains generated database for calculated fluxes using the methodology mentioned in the manuscript. The database spans calculated fluxes in one degree bins for latitudes spanning 30° to -10° N and longitudes spanning 0° to 360°. There are 14760 separate .csv files that are for each one by one degree bin. The title of each file contains its coordinates in the format XXXNXXXEtb.csv (e.g. 000N000Etb.csv for 0°N, 0°E). Each .csv file contains four separate columns and variable rows. The columns have headers corresponding to specific values. "ls" corresponds to solar longitude or date based on Mars' orbit around the Sun. "Flux" corresponds to calculated flux based on the methodology presented on the manuscript. "Delta-T" is the difference in temperature comparing modeled temperature compared to Thermal Emission Spectrometer (TES) measured temperature. "Tau" corresponds to calculated Dust visible opacities using the methodology presented in this work. The rows in each file vary based on the temporal observations from TES at each location. </p> <p>The zip file titled "fitdatabase.zip" contains generated database for fitted fluxes using the methodology mentioned in the manuscript. The database spans calculated fluxes in one degree bins for latitudes spanning 30° to -10° N and longitudes spanning 0° to 360°. There are 14760 separate .csv files that are for each one by one degree bin. The title of each file contains its coordinates in the format XXXNXXXEtbf.csv (e.g. 000N000Etbf.csv for 0°N, 0°E). Each .csv file contains six separate columns and three hundred and sixty rows. The columns have headers corresponding to specific values. "ls" corresponds to solar longitude or date based on Mars' orbit around the Sun. "Flux" corresponds to calculated flux based on the methodology presented on the manuscript. "Delta-T" is the difference in temperature comparing modeled temperature compared to measured temperature. The fitting algorithm interpolates points between values in the calculated flux database and applies a rolling mean fit with a window spanning ten degrees in solar longitude centered at each calculated flux point. "FLAG" indicates the amount of points of calculated flux points that exist within the ten degree window centered at each flux point to demonstrate to the user how much data had to be fitted. "From Ls" shows the leftmost edge of the rolling mean fit window. "To Ls" shows the rightmost edge of the rolling mean fit window. The rows in each file correspond to one degree of solar longitude the fitting algorithm was designed to cover each solar longitude bin. </p> <p> </p>
Daiber Collection Database of Arabic Manuscripts.
<p><a href="http://ricasdb.ioc.u-tokyo.ac.jp/daiber/db_index_eng.html">Daiber Collection Database of Arabic Manuscripts in the Institute of Oriental Culture, University of Tokyo</a>. </p>
Supplementary material 2 from: Senderov V, Georgiev T, Penev L (2016) Online direct import of specimen records into manuscripts and automatic creation of data papers from biological databases . Research Ideas and Outcomes 2: e10617. https://doi.org/10.3897/rio.2.e10617
This spreadsheet contains the information about the specimen API's of GBIF, BOLD Systems, iDigBio, and PlutoF. It lists the endpoints and the documentation URLs in the sheet named "APIs". In the sheet named "Mappings" it lists how to map the non-DwC compliant APIs (BOLD and PlutoF) to DwC-terms.
Supplementary material 3 from: Senderov V, Georgiev T, Penev L (2016) Online direct import of specimen records into manuscripts and automatic creation of data papers from biological databases . Research Ideas and Outcomes 2: e10617. https://doi.org/10.3897/rio.2.e10617
This archive contains XSLT transformations from EML v. 2.1.1 and v. 2.1.0 to Pensoft data paper format.
Supplementary material 1 from: Senderov V, Georgiev T, Penev L (2016) Online direct import of specimen records into manuscripts and automatic creation of data papers from biological databases . Research Ideas and Outcomes 2: e10617. https://doi.org/10.3897/rio.2.e10617
A template for an occurrence or specimen record to be imported as a material citation.
Figure 5 from: Senderov V, Georgiev T, Penev L (2016) Online direct import of specimen records into manuscripts and automatic creation of data papers from biological databases . Research Ideas and Outcomes 2: e10617. https://doi.org/10.3897/rio.2.e10617
Figure 5 - Selection of the journal and "Data Paper (Biosciences)" template in the ARPHA Writing Tool.
Figure 2 from: Senderov V, Georgiev T, Penev L (2016) Online direct import of specimen records into manuscripts and automatic creation of data papers from biological databases . Research Ideas and Outcomes 2: e10617. https://doi.org/10.3897/rio.2.e10617
Figure 2 - This fictionalized workflow presents the flow of information content of biodiversity specimens or biodiversity occurrences from the data portals GBIF, BOLD Systems, iDigBio, and PlutoF, through user-interface elements in AWT to textualized content in a Taxonomic Paper manuscript template intended for publication in the Biodiversity Data Journal.
Figure 3 from: Senderov V, Georgiev T, Penev L (2016) Online direct import of specimen records into manuscripts and automatic creation of data papers from biological databases . Research Ideas and Outcomes 2: e10617. https://doi.org/10.3897/rio.2.e10617
Figure 3 - User interface of the ARPHA Writing Tool controlling the import of specimen records from external databases.
Database for the manuscript "Songbirds adjust oxygen carrying capacity through modulation of the number rather than the size of erythrocytes"
<p>This database is used for the manuscript "Songbirds adjust oxygen carrying capacity through modulation of the number rather than the size of erythrocytes". The database includes hematological parameters of 697 individuals from three species. One sheet describes all the columns in the database. For more information on the methodology, please see the Main Text or the Supplementary Materials.</p> <p>The database has restricted access (upon request) for the entire duration of the revision process. If a paper is accepted, the database will become public.</p>
Figure 6 from: Senderov V, Georgiev T, Penev L (2016) Online direct import of specimen records into manuscripts and automatic creation of data papers from biological databases . Research Ideas and Outcomes 2: e10617. https://doi.org/10.3897/rio.2.e10617
Figure 6 - The user interface field for uploading EML files into ARPHA.
Figure 4 from: Senderov V, Georgiev T, Penev L (2016) Online direct import of specimen records into manuscripts and automatic creation of data papers from biological databases . Research Ideas and Outcomes 2: e10617. https://doi.org/10.3897/rio.2.e10617
Figure 4 - Download of an EML from the GBIF Integarted Publishuing Toolkit (IPT)
Figure 1 from: Senderov V, Georgiev T, Penev L (2016) Online direct import of specimen records into manuscripts and automatic creation of data papers from biological databases . Research Ideas and Outcomes 2: e10617. https://doi.org/10.3897/rio.2.e10617
Figure 1 - Poll results about composition of audience during live participation.
Database for manuscript IoToF: A Long-Reach Fully Passive Low Rate Upstream PHY for IoT over Fiber
<p>The attached file contains all the experimental results related with the manuscript entitled "IoToF: A Long-Reach Fully Passive Low Rate Upstream PHY for IoT over Fiber" submitted in Electronics MDPI. In addition are included .m files to analyze the database.</p>
Data and code associated to the manuscript: "The Octocoral Trait Database: a global database of trait information for octocoral species"
<p>The ZIP file contains structured data and code to create all figures from the manuscript: “The Octocoral Trait Database: a global database of trait information for octocoral species”.</p> <p>The folder contains the following files:</p> <p>· Code.R – This is the annotated code used to create all figures in R. (v R studio; 2023.06.0+421)</p> <p>· database.csv – This is the first data realase of the octocoral trait database, used to create all figures of the manuscript.</p> <p>· sp_id.csv – This is a file containing the list of accepted octocoral species contained in the database</p> <p>· iqtree.tre – This is a tree object used to create a family-resolved tree of octocorals. It has been downloaded from McFadden et al. 2022. Revisionary systematics of Octocorallia (Cnidaria: Anthozoa) guided by phylogenomics</p> <p>· MEOW – A folder containing regional information from Spalding et al. 2007. Marine Ecoregions of the World: A Bioregionalization of Coastal and Shelf Areas</p> <p>· Provinces_coord.csv: A file containing the coordinates of marine provinces, also derived from Spalding et al. 2007</p>
Database (1/5) for manuscript 'Suitability of 17 rainfall and temperature gridded datasets for large-scale hydrological modelling in West Africa'
<p>******************************************************************************************************************************************************<strong>NOTICE: </strong>all datasets and tools provided in this database can and should only be used to reproduce the original experiment for which the database was created. The use of any datasets and tools in this database is subject to third party restrictions. Before copying or using this database for other purposes than reproducing the original experiment for which it was created, please ask for adequate authorisations to the author (Moctar Dembélé, mocdembele@gmail.com), who might additionaly need the authorization of the providers of the data and the tools available in this database. ******************************************************************************************************************************************************</p> <p>This database provides model inputs and outputs for the manuscript 'Suitability of 17 rainfall and temperature gridded datasets for large-scale hydrological modelling in West Africa' by Dembélé et al.</p> <p>This is part 1 out of 5 of the full database.</p> <p>-input_morpho_calib contains the morphological data and the datasets used for model calibration and runs.</p> <p>-input_WFDEI contains the input datasets using meteorological variable from the WFDEI product in combination with different rainfall datasets.</p> <p>Other parts of the database can be found at:</p> <p>-Part 2: https://doi.org/10.5281/zenodo.3663063</p> <p>-Part 3: https://doi.org/10.5281/zenodo.3663065</p> <p>-Part 4: https://doi.org/10.5281/zenodo.3663069</p> <p>-Part 5: https://doi.org/10.5281/zenodo.3663071</p> <p>For further information, please contact Moctar Dembélé, mocdembele@gmail.com</p> <p> </p>
Database (5/5) for manuscript 'Suitability of 17 rainfall and temperature gridded datasets for large-scale hydrological modelling in West Africa'
<p>******************************************************************************************************************************************************<strong>NOTICE: </strong>all datasets and tools provided in this database can and should only be used to reproduce the original experiment for which the database was created. The use of any datasets and tools in this database is subject to third party restrictions. Before copying or using this database for other purposes than reproducing the original experiment for which it was created, please ask for adequate authorisations to the author (Moctar Dembélé, mocdembele@gmail.com), who might additionaly need the authorization of the providers of the data and the tools available in this database. ******************************************************************************************************************************************************</p> <p>These datasets are parts of the database for the manuscript 'Suitability of 17 rainfall and temperature gridded datasets for large-scale hydrological modelling in West Africa' by Dembélé et al.</p> <p>It contains parts of the output datasets used to calibrate and run the hydrological model.</p> <p>The folders contains the model outputs when using the input data from different data providers, i.e., ERA5, EWEMBI, JRA55, MERRA, PGF.</p> <p>Check the main database at https://doi.org/10.5281/zenodo.3662308</p> <p>For further information, please contact Moctar Dembélé, mocdembele@gmail.com</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.