Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
1,581
datasets available to search
ShareScore release 0.7.1
Dataset results
1,581 results for “manuscripts”
Annual precipitation and photo-derived vegetation and litter cover (2013-2021) used for analysis in the manuscript “Growing grasses in the desert: Multi-scale Interactions and State Change Reversal in Drylands”
This dataset contains water year precipitation collected from meteorological stations, litter and vegetation cover values derived from overhead photos, and litter and soil accumulation in lateral photos in a long-term experiment (2013-2021) of cross-scale interactions (CSIs) at the Jornada Basin LTER site in southern New Mexico, U.S.A. Manipulations were initiated in 2013 at 15 experimental blocks, each with 4 treatment plots: plant-scale herbicide of mesquite shrubs, patch-scale connectivity modifiers (ConMods), herbicide + ConMods, control without manipulations. Litter, soil, and vegetation cover were estimated using repeat overhead photographs of microplots within treatment and control plots. Litter and soil accumulation were estimated from lateral photos of ConMods. This dataset utilized QuickBird imagery from 2011 to assess ground cover classes within the Jornada Basin, focusing on bare ground, herbaceous, and shrub cover. Daily precipitation data collected from 13 meteorological stations were used to calculate water year (1 October-30 September) precipitation from 2013 through 2021. This dataset provides supporting data for the manuscript "Growing grasses in the desert: Multi-scale Interactions and State Change Reversal in Drylands" by Peters et al.
Chemical data accompanying the manuscript "Chromium cycling in redox-stratified basins challenges δ53Cr paleoredox proxy applications" in Geophysical research Letters
<p>Water column and sediment chromium concentration and stable isotope data and ancillary metal data from Lake Cadagno, Switzerland. These data accompany a manuscript by the same authors in Geophysical Research Letters (doi: 10.1029/2022GL099154).</p> <p> </p> <p>The associated CTD data are available in the following Zenodo dataset: Sepúlveda Steiner, O., Carlino, C., Haizmann, E., Roman, S., Wüest, A., & Bouffard, D. (2022). Lake Cadagno 2017 CTD and water quality monitoring [Data set]. Zenodo. <a href="http://doi.org/10.5281/zenodo.7127882">http://doi.org/10.5281/zenodo.7127882</a></p>
Aggregated 30-minute soil water and temperature data from 9 NPP shrub sites at Jornada Basin LTER, 2013 - 2024 (for Pinos et al 2025 manuscript)
This is an aggregated dataset of 30-minute soil temperature and moisture data from 9 shrub-dominated NPP study sites at the Jornada Basin LTER site in southern New Mexico, U.S.A. Collection of soil volumetric water content data at all of the 15 Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content and soil temperature are measured every 30 minutes at an automated meteorological station installed at all 15 of the Jornada LTER program’s NPP sites. This dataset aggregates only the stations located at the 9 sites with shrub-dominated vegetation cover (creosotebush, tarbush, and mesquite dune sites). Measurements are made every 30 minutes at 10 cm, 20 cm, and 30 cm soil depths. This dataset is in support of the Pinos et al. 2025 manuscript.
Aggregated 30-minute meteorology data from 9 NPP shrub sites at Jornada Basin LTER, 2013 - 2024 (for Pinos et al 2025 manuscript)
This is an aggregated dataset of 30-minute summary meteorology data from 9 shrub-dominated NPP study sites at the Jornada Basin LTER site in southern New Mexico, U.S.A. Average air temperature, relative humidity, total precipitation, wind speed, wind direction, and solar radiation are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at all 15 of the Jornada LTER program’s NPP sites. This dataset aggregates only the stations located at the 9 sites with shrub-dominated vegetation cover (creosote, tarbush, and mesquite sites). Wind speed is measured at 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximate 2.5m. Solar radiation is measured at 3m. This dataset is in support of the Pinos et al. 2025 manuscript.
Dataset to Manuscript: Vertical mobility of pyrogenic organic matter in soils: A column experiment, Marcus Schiedung et al. (Biogeosciences)
<p>Dataset to manuscript: Schiedung, M., Bellè, S.-L., Sigmund, G., Kalbitz, K., and Abiven, S.: Vertical mobility of pyrogenic organic matter in soils: A column experiment, Biogeosciences, https://doi.org/10.5194/bg-17-6457-2020, 2020.</p> <p>All parameters and variables are described in "Var_names" files.</p>
Dataset to Manuscript: Key drivers of pyrogenic carbon redistribution during a simulated rainfall event, Bellè et al. 2021 (Biogeosciences)
<p>Dataset to manuscript: Bellè, S-L., Berhe, A., Hagedorn, F., Santin, C., Schiedung, M., van Meerveld, I. and Abiven, S.: Key drivers of pyrogenic carbon redistribution during a simulated rainfall event, Biogeosciences, https://doi.org/10.5194/bg-2020-361, 2021. </p> <p>All parameters and variables are described in the "var_names" file.</p>
Dataset and program scripts for the reproducibility of the hierarchical data structure file. Related to the manuscript entitled: Hierarchical Representation of Measurement Data, Metrological Uncertainty and Metadata for Calibrated Battery Tests
<p>We present an interoperable hierarchical data representation for battery tests, leading to improved scalability of data transmission and enhanced data accessibility and comprehensibility for both human interpretation and machine processing. The hierarchical data format includes the raw trace electrical measurement data, the metrological calibration and uncertainty data, the metadata such as experimental settings, instruments and software versions, as well as post-processed data such as electrochemical model fit parameters. This data representation allows repetition of the battery test under the exact same conditions such that identical results are achieved within defined error bounds. This is in line with the general F.A.I.R. data approach and provides repeatability and traceability in the battery value chain. As an application of the hierarchical data representation, we show the classification of cells as pass/fail being performed with quantitative confidence levels. We demonstrate the complete workflow of establishing the hierarchical data structure for electrochemical impedance spectroscopy (EIS), starting from metrological traceability of the calibration and uncertainty analysis towards the storage of the structured data as a single integrated file that preserves the hierarchical data format.</p>
Raw data for the submitted manuscript entitled "Mapping and Disposal of Irrigation Pipes for a Sustainable Management of Agricultural Plastic Waste", authors Ileana Blanco, Giuliano Vox, Fabiana Convertino, and Evelia Schettini
<p><span>The file regards the evaluation of plastic indexes and agricultural plastic waste quantities in Apulia region due to the use of irrigation pipes. The data is used to identify the critical areas for plastic waste production due to irrigation pipes.</span></p>
Raw data for the submitted manuscript entitled "Prospective Scenarios for Addressing the Agricultural Plastic Waste Issue: Results of a Territorial Analysis"
<p><span>Agricultural activities have been positively affected by the use of plastic products, but this has resulted in the production of plastic waste and led to an increase in environmental pollution. </span><span>This file concerns plastic waste indices to different crop types and plastic products allowed quantifying and georeferencing actual plastic waste production. Two improved scenarios were considered, the first consisted of extending the lifespan of some plastics, and the second entailed the introduction of some biodegradable alternatives. </span></p>
Dataset related to the manuscript: "An open-source integrated framework for the automation of citation collection and screening in systematic reviews"
<p>Dataset related to the manuscript: “An open-source integrated framework for the automation of citation collection and screening in systematic reviews”, to be used together with the code stored at https://github.com/AD-Papers-Material/BART_SystReviewClassifier to reproduce the results.</p> <p>There are three datasets:<br> - The Record data collected from the online scientific databases;<br> - The session journal which describes the search session, i.e., how many records were collected and from which source, for each query/session pairs.<br> - The session data which is the outcome of the classification and review tasks;</p>
Dataset for the manuscript "Event-triggered STED imaging"
<p>Dataset that supports the implementation of the event-triggered STED method and support the findings in the manuscript: "Event-triggered STED imaging" (Jonatan Alvelid, Martina Damenti, Chiara Sgattoni, Ilaria Testa, preprint: https://doi.org/10.1101/2021.10.26.465907). The data files are organized according to the various experiments performed for characterization or application of the method. References to the specific figures in the manuscript that uses the different data is provided in the info file.</p> <p>The scripts provided at https://github.com/jonatanalvelid/etSTEDanalysis (https://doi.org/10.5281/zenodo.6469723) have been used for image and data handling, and image analysis of the here provided dataset.</p>
Code and data set for data analysis published as manuscript "Bacttle: a microbiology educational board game for lay public and schools"
<p>Code that processed raw data and plots the figures of the manuscript "Bacttle: a microbiology educational board game for lay public and schools"</p> <p>Below is a table with the original survey questions. The ID corresponds to the column displayed on the data set. When letters are followed by a number (1 or 2), it means that the question was answered before playing the game (1) and after playing the game (2).</p> <table> <tbody> <tr> <td> <p><em>ID<sup>1</sup></em></p> </td> <td> <p><em>Question text</em></p> </td> <td> <p><em>Possible answers<sup>2</sup></em></p> </td> </tr> <tr> <td> <p><em>A</em></p> </td> <td> <p>How old are you?</p> </td> <td> <p> </p> </td> </tr> <tr> <td> <p><em>B</em></p> </td> <td> <p>Do you know what a bacterium is?</p> </td> <td> <p>y/n</p> </td> </tr> <tr> <td> <p><em>C</em></p> </td> <td> <p>Do you know what a bacterial capsule is?</p> </td> <td> <p>y/n</p> </td> </tr> <tr> <td> <p><em>D</em></p> </td> <td> <p>Do bacteria have tools to harm each other?</p> </td> <td> <p>y/n/idk</p> </td> </tr> <tr> <td> <p><em>E</em></p> </td> <td> <p>Do bacteria reproduce at the same pace?</p> </td> <td> <p>y/n/idk</p> </td> </tr> <tr> <td> <p><em>F</em></p> </td> <td> <p>What is sporulation?</p> </td> <td> <p>A resistant state that some bacteria can achieve under unfavorable conditions.</p> </td> </tr> <tr> <td> <p>The release of toxins by bacteria.</p> </td> </tr> <tr> <td> <p>idk</p> </td> </tr> <tr> <td> <p><em>G</em></p> </td> <td> <p>What are flagella used for?</p> </td> <td> <p>Sticking to surfaces.</p> </td> </tr> <tr> <td> <p>Motility in liquid environments.</p> </td> </tr> <tr> <td> <p>idk</p> </td> </tr> <tr> <td> <p><em>H</em></p> </td> <td> <p>What does it mean to be lithotrophic?</p> </td> <td> <p>A bacterium can get energy from minerals.</p> </td> </tr> <tr> <td> <p>A bacterium can get energy from the sunlight.</p> </td> </tr> <tr> <td> <p>idk</p> </td> </tr> <tr> <td> <p><em>I</em></p> </td> <td> <p>Can bacteria be infected by viruses?</p> </td> <td> <p>y/n/idk</p> </td> </tr> <tr> <td> <p><em>J</em></p> </td> <td> <p>Are all bacteria harmful for humans?</p> </td> <td> <p>y/n/idk</p> </td> </tr> <tr> <td> <p><em>K</em></p> </td> <td> <p>How many bacteria are in a coffee spoon of yoghurt?</p> </td> <td> <p>Millions</p> </td> </tr> <tr> <td> <p>Hundreds</p> </td> </tr> <tr> <td> <p>idk</p> </td> </tr> <tr> <td> <p><em>L</em></p> </td> <td> <p>How easy did you find the gameplay?</p> </td> <td> <p>VE/E/A/D/VD</p> </td> </tr> <tr> <td> <p><em>M</em></p> </td> <td> <p>Did you find the card content easy to understand?</p> </td> <td> <p>VE/E/A/D/VD</p> </td> </tr> <tr> <td> <p><em>N</em></p> </td> <td> <p>Did you like the setup of the game?</p> </td> <td> <p>y/n/idk</p> </td> </tr> <tr> <td> <p><em>O</em></p> </td> <td> <p>Would you like to play this game again?</p> </td> <td> <p>y/n/idk</p> </td> </tr> <tr> <td> <p><em>P</em></p> </td> <td> <p>What can we improve?</p> </td> <td> <p> </p> </td> </tr> </tbody> </table> <p>1) Question A categorizes the player’s age; B and C assess the initial level of knowledge in microbiology (none -both questions are answered negatively-, basic -player knows what a bacterium is but not a bacterial capsule-, or advanced -both answers are positive-); questions D-I score knowledge acquisition; J and K are control questions; L-O evaluate the appreciation of the game; and P is an optional free text-entry answer for additional feedback. <br>2) y= yes, n=no, idk=I don’t know, VE=very easy, E=easy, A=adequate, D=difficult, VD=very difficult.</p>
Khotanese Manuscripts from Chinese Turkestan in the British Library (XML records)
<p>The file contains XML records matching the print edition of Skjaervo's catalogue, in TEI schema P4.</p> <p>The records in this file are a <strong>draft version</strong>. They have not yet been proofed and checked against physical holdings, which will be done with the next version release.</p> <p>The XML records have been produced as part of the work for the project <em>Beyond Boundaries: Religion, Region, Language and the State</em> (An ERC Synergy project from the European Research Council under the EU's 7th Framework Programme (FP7/2007-2013)/ERC grant agreement no.609823)</p>
Data set of the manuscript titled: Follicular Immune Landscaping Reveals a distinct profile of FOXP3hi CD4+ T cells in Treated compared to Untreated HIV
<p>Multiplex imaging data were collected using a scanning confocal system (STELARIS, Leica) and proccessed with the Imaris and Fiji imaging programs. csv files incuding the position identifiers and intensities for each fluorochrome used were generated and data were further analysed using the FlowJo10 program. Neighboring analysis was performed using the G function and mean of minimum distances of relevant cell type pairs. </p>
Dataset of the manuscript "Assessing the influence of Eisenia andrei on the decomposition of Casuarina equisetifolia litter in vermicompost."
<p>Data generated during an experiment of decomposition of <em>Casuarina equisetifolia</em> litter by the application of vermicompost (VC) or the combination vermicompost + the earthworm <em>Eisenia andrei</em> (E).</p> <p>Six files are included:</p> <p>"<strong>readme.csv</strong>" is a file where we explain the meaning of each column (and in which units is expressed) in each of the other five files.</p> <p>"<strong>earthworm_N_biomass.csv</strong>" is a table with the number of <em>Eisenia andrei</em> individuals and the total earthworm fresh weight in each of the experimental units we sampled</p> <p><strong>"FTIR_spectra.csv" </strong>is a file with the raw spectral data we obtained from the litter by Fourier Transform Infrared spectroscopy combined with Attenuated Total Reflectance (FTIR-ATR). First column indicate the wavenumber (cm-1) and the other columns indicate the absorbance values of each litter sample for each wavenumber.</p> <p><strong>"litter_chemical_composition.csv"</strong> is a file with the raw data of the concentrations of different chemical elements measured in <em>C. equisetifolia</em> litter collected at different decomposition times.</p> <p><strong>"litter_mass_loss.csv"</strong> contains the dry weight data of the litter at time 0 and after each collection time, as well as the percentage of litter mass loss with time. .</p> <p>"<strong>mesofaunal_com.</strong><strong>csv</strong>" are the numbers of individuals of several groups of mesofaunal organisms (collembolans, mites, and others) we recovered in each of our experimental units.</p>
Photosynthetic quotients in aquatic ecosystems: data and code supporting Trentman et al. 2023 manuscript in L&O Letters
This study provides a summary of the mismatch between our current knowledge and the application of the photosynthetic quotient (PQ). We use data from the Upper Clark Fork River (UCFR) as a case study example of how the PQ may vary in space and time based on environmental conditions. Surface water sample measurements of dissolved oxygen (DO), temperature (T), nutrients (NO3-N, NH4-N, SRP), and several metabolism indicators are represented in this data product. Figures represent data from two sites on the mainstem of the Upper Clark Fork River (UCFR) over a roughly two-year period, from 2019 to 2021. Some measurements are derived from existing data products or manuscripts, including DOT (Valett, et al., 2023); nutrients (H. M. Valett, Dec. 2, 2022, pers. comm); air pressure (Deer Lodge Weather Station, 2023); underlying data for Trentman et al. (2023) Figure 2 and Figure 4e and 4f (via Burris, 1981); and SI-Figure2 USGS gage data (USGS, 2023). Products unique to this data product include metabolism data (Trentman, et al., 2023 (Figure 5)), chamber data supporting Trentman, et al., (2023) Figure 6, and code simulations/data. All analytes and variables are documented in the project data dictionary. For details on data collection methods, see the methods section, the manuscript, and/or referenced data products.
NEON soil inorganic nitrogen measurements 2017-2020, derived data and code for Earth's Future manuscript
Nitrogen (N) is a key limiting nutrient in terrestrial ecosystems, but there remain critical gaps in our ability to predict and model controls on soil N cycling. This may be in part due to lack of standardized sampling across broad spatial-temporal scales. In a paper submitted for publication in Earth's future, we introduce a continentally distributed, publicly available dataset collected by the National Ecological Observatory Network (NEON) that can help fill these gaps. To overcome methodological challenges and generate a standardized dataset, we produced a derived data version of soil inorganic N pools and net N transformation rate tables, which accounts for nitrite contamination in blanks. This derived dataset is then used to evaluate sources of variation within the NEON sampling design with mixed effects models, and we also compare measured net N mineralization to simulated fluxes from the Community Earth System Model 2 (CESM2).
Data package supporting manuscript "Widespread Heterogeneity in Density-Dependent Mortality of Nearshore Fishes"
This repository contains the complete data synthesis and analysis pipeline for a global meta-analysis on density-dependent mortality in reef fishes. We estimated mortality parameters (α and β) from >30 ecological studies and explored how ecological traits, experimental methods, and phylogenetic history explain variation in density dependence. It comprises eight data tables in csv format, three .tre files for phylogenetic trees (see method document for data sources), and the zipped code folder (including 12 R scripts) to ensure transparent, end-to-end reproducibility of data processing, analysis, and visualization. This package supports the manuscript “Widespread Heterogeneity in Density-Dependent Mortality of Nearshore Fishes” by Stier & Osenberg (Ecology Letters).
Raw data to accompany the manuscript 'Data for Engineering Lipid Metabolism of Chinese Hamster Ovary (CHO) Cells for Enhanced Recombinant Protein Production' published in the Journal Data in Brief
<p>This repository consists of the raw western blot, microscopy and mass spectrometry data to accompany the manuscript 'Data for Engineering Lipid Metabolism of Chinese Hamster Ovary (CHO) Cells for Enhanced Recombinant Protein Production' published in the Journal Data in Brief and associated with the article '<a href="https://www.ncbi.nlm.nih.gov/pubmed/31805379">Engineering of Chinese hamster ovary cell lipid metabolism results in an expanded ER and enhanced recombinant biotherapeutic protein production</a>' published in the journal Metabolic Engineering (see DOI: 10.1016/j.ymben.2019.11.007). </p> <p>The western blot raw file is associated with Figure 1a and 1b of the Data in Brief manuscript.</p> <p>The confocal microscopy raw image files (x3) are associated with Figure 1c of the Data in Brief manuscript.</p> <p>The mass spectrometry files are the raw data that refers to the samples presented in Figure 5 of the Data in Brief manuscript. Files are labelled as in the Data in Brief and Metabolic Engineering manuscripts. The file name structures is as follows;</p> <p>CHO-Controlpoolai</p> <p>Where 'a' represents replicate 'a' of three biological replicates and 'i' refers to mass spectrometry technical analysis 1 of 3 technical analyses of each replicate (thus for each cell pool or line there are three biological replicates that are each analysed in triplicate such that there are 9 raw mass spectrometry files for each cell pool or line).</p> <p>All the mass spectrometry files are found in the compressed (zip) file named mass_spectrometry_raw_files_archive.zip</p>
Mechanical data of rotary shear fluid pressurised experiments for the manuscript: "Fluid pressurisation and earthquake propagation in the Hikurangi subduction zone"
<p>Mechanical data of rotary shear fluid pressurised experiments.</p> <p>Tab-delimited file with calibrated measurements of:</p> <ul> <li>Time (milliseconds)</li> <li>Normal stress: Normal (MPa) </li> <li>Fault displacement: Slip (mm)</li> <li>Fault velocity: Velocity (mm/s)</li> <li>Shear stress: Shearstress (MPa)</li> <li>Downstream Pore Pressure: Pressure_ds (MPa)</li> <li>Confining Pressure: Pressure_conf (MPa)</li> <li>Upstream pore pressure: Pressure_us (MPa)</li> <li>Temperature of the upstream boundary of the gouge layer: Temperature_us (°C)</li> <li>Thickness of the gouge layer: Thickness (mm).</li> </ul>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.