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3,465 results for “mass”
Outdoor mesocosm study evaluating how mass, NaCl tolerance, and pesticide tolerance affect oxidative stress biomarkers (CAT, SOD, GR, GPx, TBARS) in larval wood frogs (Rana sylvatica) exposed to baseline and NaCl-contaminated conditions, 2019
Biomarkers of oxidative stress can aid in wildlife monitoring by allowing conservationists to detect sublethal environmental shifts. However, interpretation of stress responses can be complicated by multiple interacting factors (e.g., individual development, evolved physiological tolerance to stressors) which alter biomarker expression. Here, we investigated how individual ontogenetic traits and population-level tolerance traits influence oxidative stress responses under baseline and contaminated environmental conditions. For our model contaminant, we used NaCl (common freshwater contaminant due to factors such as coastal flooding, irrigation, airborne salt circulation, drought, runoff from road deicing salts). For our model wildlife populations, we used larval wood frogs (Rana sylvatica) from six noninteracting populations known to vary in two population-level tolerance traits: NaCl tolerance (calculated as average time to death from lethal NaCl exposure) and pesticide tolerance (determined by proxy of distance to agriculture - a consistent and highly repeatable relationship). At an outdoor research facility, R. sylvatica tadpoles were exposed to either baseline conditions (0 g/L NaCl added) or NaCl-contaminated conditions (1 g/L NaCl added for 21 days, then reduced to 0.5 g/L NaCl). Exposures were conducted in individual units with 40 replicates per population for each treatment. The experiment was terminated per individual to capture the full term of larval development (Developmental stage: Gosner stage 36), lasting between 33-48 days. For each individual, we measured mass, Snout-Vent-Length, and developmental stage before processing for biomarker expression. Individual homogenates were assayed for oxidative stress biomarkers superoxide dismutase (SOD; responsible for Reactive Oxygen Species capture and peroxide production), glutathione peroxidase (GPx; responsible for high-affinity peroxide reduction), catalase (CAT; responsible for low-affinity peroxide reducti
20-Year Root Mass in Chronic Nitrogen Amendment Experiment at Harvard Forest 2008
Forests typically respond to nitrogen additions with increased productivity, hence a long-held paradigm was that chronic additions of anthropogenically-derived atmospheric deposition would have positive ecosystem effects. However, twenty years of work at the Harvard Forest Chronic N Deposition plots, and in other forest ecosystems as well, has shown that that this simplistic view is incomplete. For example, enhanced ammonium uptake increases soil acidity, leading to mobilization of aluminum, and loss of nutrient cations (e.g. Mg2+, Ca2+, and K+ ) all of which influence root mass, turnover, and activity. To address long-term impacts of N additions on forest root mass, we removed O-horizon (forest floor) samples from the Chronic N hardwood and red pine stands to quantify the total mass of roots. We found that long term N additions had contrasting results in the two forests. In the hardwood plots, total root mass (less than 2mm) increased from 0.167 + 0.026 (S.E.) kg m-2 in the control plot to 0.434 + 0.170 kg m-2 in the high N plots. In contrast, in the red pine stand, roots declined from 0.074 + 0.011 (S.E.) kg m-2 in the control plot to 0.031 + 0.016 kg m-2 in the high N plots. These data are in agreement with data for aboveground productivity at the Chronic N plots, which show stimulated growth in the hardwoods and severe growth declines and enhanced mortality in the pine stand.
Damage assessment of a physical beam reinforced with masses - dataset
<p>The dataset beam-signal contains the spectrum vibration signals in the frequency domain measured from a beam reinforced with masses under healthy and faulty conditions. This data is for a commonly used system in various industrial applications. The data can be used for online condition process monitoring to detect and diagnose any anomaly or faulty condition in the system. Hence, the datasets provide the geometric and experimental measurements performed on the beam reinforced with masses for various mass losses considered structural damage. The collected data included the following datasets:</p> <ul> <li>Dataset Mass-position contains 70 sampling positions for the six masses attached to the beam. (<a href="../api/records/8081690/draft/files/Mass%20position.xlsx/content">Mass position</a>)</li> <li>Dataset DI contains 280 damage indexes calculated using the FRAC method. (<a href="../api/records/8081690/draft/files/DI_FRAC_Exp-estimation.xlsx/content">DI_FRAC_Exp-estimation</a>)</li> <li>Dataset beam-signal includes 280 inertances responses magnitudes and respective phases considering 70 samples of healthy and 210 sampled of damaged conditions ( <a href="../api/records/8081690/draft/files/Dataset%20Beam-signal_Healthy.zip/content">Dataset Beam-signal_Healthy, </a><a href="../api/records/8081690/draft/files/Dateset%20Beam-signal_Damaged-2.96.zip/content">Dateset Beam-signal_Damaged-2.96, </a></li> </ul> <p><a href="../api/records/8081690/draft/files/Dataset%20Beam-signal_Damaged-5.92.zip/content"> Dataset Beam-signal_Damaged-5.92, </a><a href="../api/records/8081690/draft/files/Dataset%20Beam-signal_Damaged-8.87.zip/content">Dataset Beam-signal_Damaged-8.87) .</a></p> <p>The dataset beam-signal can be used to develop structural health monitoring techniques for detecting damage and anomalies in the structure. The dataset's Mass-position and DIs can impose parametric uncertainty in the experiment. Stochastic and damage identification metrics can be used for further insights on new monitoring and control techniques. Since the tests include paramedic uncertainty, they can also be employed in uncertainty quantification, stochastic modelling and supervised and unsupervised machine learning techniques. </p> <p>Therefore, the datasets are intended to benefit the scientific community investigating the dynamics of structures and readers interested in experimental practices applied to systems and modelling. These datasets can be used for numerical model validation, identification techniques, uncertainty quantification, machine learning, and structural integrity monitoring algorithms based on experimental measurement samples on the beam reinforced with mass.</p> <p>A detailed description of the experiment can be found in </p> <p>[1] Sousa, A.A.S.R., da Silva Coelho, J., Machado, M.R. et al. Multiclass Supervised Machine Learning Algorithms Applied to Damage and Assessment Using Beam Dynamic Response. J. Vib. Eng. Technol. (2023). https://doi.org/10.1007/s42417-023-01072-7</p> <p>[2] Monitoramento da Integridade Estrutural de Vigas utilizando Técnicas de Aprendizado de Máquina, 2023. Mestrado em Integridade de Materiais da Engenharia - Universidade de Brasília (In Portuguese)</p> <p>[3] Amanda A.S.R. de Sousa, Marcela R. Machado, Experimental vibration dataset collected of a beam reinforced with masses under different health conditions, Data in Brief, 2024, 110043, ISSN 2352-3409, https://doi.org/10.1016/j.dib.2024.110043.</p>
City of Seattle, Seattle Public Utilities, Amphibian Egg Mass Counts 2002 - Current, Cedar River Municipal Watershed, King County, WA
This data package contains survey data beginning in 2002 for amphibian egg masses in five small kettle lakes (known as "14 Lakes") in the Cedar River Municipal Watershed, located in King County, Washington, USA. These surveys are conducted annually and are intended to be continued. The lakes range in size from 0.8 to 4.3 acres, have no perennial inlet or outlet, and were formed through glacial outwash deposits. The lakes are located at an elevation of 800 feet and are well suited for pond breeding amphibians because the lakes have no fish. Surveys were conducted annually, typically during the last week of March or first week of April, to coincide with amphibian breeding seasons. Surveyors walked, waded, or paddled the perimeter of each of the lakes during a survey, and tallied the number and type of egg masses that were encountered. Red legged frogs (Rana aurora) were of specific interest for the surveys, though egg masses of other species were noted during some survey years. The lakes represent the largest known breeding concentration of red legged frogs in the municipal watershed. The water depth of the lakes fluctuates year-to-year, which affected the feasibility of surveys. Lower water levels correspond to easier survey conditions: steep slopes and thick vegetation make surveying challenging when the water is high. Surveys were periodically cancelled during years where high water made surveying difficult or during staffing shortages. Counts of red legged frog egg masses across all lakes ranged between 24 and 1778 in a given year.
Seasonal Ice Mass-balance Buoy (SIMB) measurements from sites along the Beaufort Sea Coast, Alaska, 2018-ongoing
Measurements of the thickness of sea ice and the depth of its snow cover allow us to calculate how their mass changes in response to the varying fluxes of heat between the ocean and atmosphere over the course of a season. Repeated drill measurements are not ideal for this purpose since each drill hole disturbs the ice and its insulating snow cover. Also, spatial variability in ice thickness can mask temporal changes if holes are not drilled in the same place each time. Hence, methods that do not require re-drilling are preferred. Automated systems such as the Seasonal Ice Mass-balance Buoy (SIMB; Planck et al, 2019) provide high temporal resolution for capturing sub-daily variations and typically include sensor strings to measure the vertical temperature profile from the air to the ocean, which can be used to infer other properties of the ice cover such as strength and porosity. Under the Beaufort Lagoon Ecosystems LTER (BLE LTER) research program, several SIMBs are deployed at sites along the Beaufort Sea coast and record a suite of parameters including but not limited to snow depth, ice thickness, position of ice surface and bottom, water/air temperature, and vertical profiles of temperature. Planck, C. J., J. Whitlock, C. Polashenski, and D. Perovich (2019), The evolution of the seasonal ice mass balance buoy, Cold Regions Science and Technology, 165, 102792, doi: https://doi.org/10.1016/j.coldregions.2019.102792.
Hubbard Brook Nitrogen Oligotrophication (HBNO): Foliar resorption, leaf mass per area, and leaf chemistry of sugar maple and American beech, 2020-2022
We quantified nitrogen (N) resorption of the two dominant tree species of northern hardwood forests along an elevation gradient using 14 sites at Hubbard Brook Experimental Forest, NH. For these calculations, we also quantified the leaf mass per area for both species, sugar maple and American beech. The original data before averaging for combining with chemistry data is available in an earlier revision of this dataset. Foliar N of sugar maple increased, and N resorption proficiency (NRP) decreased with increasing elevation. In contrast, foliar N and NRP of American beech did not vary significantly with elevation, suggesting that the mechanisms driving patterns of N resorption were distinct between these co-occurring species. While both species exhibited strong correlations between resorption efficiency of C and N, resorption of both elements was much greater for beech than maple. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
Molecular composition of dissolved organic matter in NTL-LTER lakes detected by Fourier-transform ion cyclotron resonance mass spectrometry
The composition of dissolved organic matter (DOM) varies widely in the environment due to distinct sources of the material and subsequent processing. DOM composition drives its reactivity in terms of many processes including photochemical reactions, microbial metabolism, and carbon cycling within water bodies. This study uses ultra-high resolution mass spectrometry via a Fourier-transform ion cyclotron resonance mass spectrometer (FT-ICR MS) to evaluate DOM composition at the molecular level to determine differences in DOM composition among the NTL-LTER lakes. Whole water samples were collected from the surface of each lake near the shore on August 18th and 19th in 2016 in. Ultraviolet-visible spectra were recorded as light absorbance can also give information about DOM composition. Additionally, concentrations of anions, cations, and pH were measured waters because these can all alter DOM reactivity in the environment. Both water chemistry and DOM composition vary widely among the lakes with the bogs displaying the most terrestrial-like signature in DOM and the oligotrophic lakes show more microbial-like or environmentally processed DOM.
Molecular composition of dissolved organic matter from Lake Mendota from June – November 2017, analyzed by Fourier-transform ion cyclotron resonance mass spectrometry
Dissolved organic matter (DOM) is a complex mixture of organic compounds found in all natural waters. Its composition affects its reactivity towards numerous processes. Its composition is a function of both its source (e.g., allochthonous or autochthonous) as well as the extent of environmental processing it has undergone (e.g., chemical or biological degradation). Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR MS) allows for the characterization of dissolved organic matter at the molecular level. The water sample was collected near the NTL-LTER research buoy on Lake Mendota. Formula assignments were made to raw mass to charge ratios detected in the mass spectrum using a custom processing script and resulting in a list of chemical formulas making up the DOM sample.
Water quality, temperature, ash-free dry mass, photosynthetic activate radiation (PAR), and zooplankton data from a warming and DOC subsidy experiment, 2020 - 2021.
This dataset includes chlorophyll-a concentrations, periphyton biomass estimates, water quality measurements, and qualitative observations from a large-scale mesocosm experiment conducted in the Green Lakes Watershed, Colorado. The experiment was designed to test how earlier lake ice-off and increased dissolved organic material (DOM), associated with terrestrial plant encroachment in alpine watersheds, interactively influence aquatic food webs. In fall 2019, twenty 2600L “megacosms” were established at Sandy Corner (3300 m ASL; 40.042289, -105.584006), left to fill with snowmelt, and maintained throughout the 2020 open water season. The experiment followed a 2 × 2 randomized block design manipulating ice-off timing (via black vs. beige tank coloration) and DOM inputs (presence/absence of willow leaf packs), with five replicates per treatment. All tanks were seeded with sediments and zooplankton from both alpine and montane lakes (Green Lake 1 and Green Lake 4), and instrumented with thermistors recording surface and hypolimnion temperature every two hours year-round. Periphyton growth was monitored using clay tiles, sampled across five time points. Chlorophyll-a concentrations were extracted from filtered water samples and analyzed spectrophotometrically. Periphyton biomass was estimated via ash-free dry mass (AFDM) determinations, based on the mass lost on combustion of material scraped from tiles. Water quality was measured 1–2 times weekly using a YSI ProPlus multiprobe and Li-Cor quantum sensor, and snow/ice cover was qualitatively assessed monthly during winter.
An updated mass-radius analysis of the 2017-2018 NICER data set of PSR J0030+0451
<p>Summarised posterior sample files associated with the preprint "An updated mass-radius analysis of the 2017-2018 NICER data set of PSR J0030+0451" by Vinciguerra et al. (2023; <a href="https://doi.org/10.48550/arXiv.2308.09469">arXiv</a>; accepted for publication in ApJ).</p><p>Also included are examples of model modules in the Python language using the X-PSI framework; and Jupyter analysis notebooks.</p><p>Please refer to the READme for detailed information.</p>
Liquid Chromatography - Tandem Mass Spectrometry (LC-MS/MS) and Gas Chromatography - Mass Spectrometry (GC-MS) Reference Libraries from Global Natural Products Social Molecular Networking (GNPS) and National Institute of Standards and Technology (NIST) WebBook Processed for Spectral Library Matching
<div>In order to obtain a high-quality LC-MS/MS reference database for spectral library matching, we selected 22 high-quality GNPS tandem mass spectrometry databases generated under the positive ion mode. Further preprocessing similar to Huber et al involving mass-to-charge (m/z) and intensity filtering yields the database found in the file LCMS_GNPS_reference_library.csv which contains 14,705 electrospray ionization (ESI) mass spectra, each of which corresponds to a unique compound. The NIST WebBook database was used to construct GC-MS database contained in the file GCMS_NIST_WebBook.csv. This database contains 23,721 electron ionization (EI) mass spectra, each of which corresponds to a unique non-hyphenated Chemical Abstract Service (CAS) Registry Number.</div> <div> </div> <div>Both LC-MS/MS and GC-MS databases are organized into three columns: one for the identifier, one for the m/z values, and one for the intensity values. For example, if spectrum A has 20 ion fragments, then there will be 20 rows corresponding to spectrum A in the corresponding database with the identifier A repeated 20 times with the corresponding m/z and intensity values.</div>
Quantifying the Sensitivity of Sea Level Change in Coastal Localities to the Geometry of Polar Ice Mass Flux -- Supplemental Data Set: Sea Level Sensitivity Kernels
<p><strong>Quantifying the Sensitivity of Sea Level Change in Coastal Localities to the Geometry of Polar Ice Mass Flux<br> SUPPLEMENTAL DATA SET: SEA LEVEL SENSITIVITY KERNELS</strong></p> <p>To accompany</p> <p> Jerry X. Mitrovica, Carling C. Hay, Robert E. Kopp, Christopher Harig, and<br> Konstantin Laytchev (2018). Quantifying the Sensitivity of Sea Level Change<br> in Coastal Localities to the Geometry of Polar Ice Mass Flux. Journal of<br> Climate. doi: 10.1175/JCLI-D-17-0465.1.</p> <p>We provide sea level kernels for ~740 tide gauge sites in the Permanent Service for Mean Sea Level (PSMSL) database (Holgate et al., 2013). Kernels associated with sensitivities to Greenland and Alaskan glacier melt are given on a spatial grid covering the globe, with 512 latitude rows (i=1,512) and 1024 longitude (j=1,1024) columns.</p> <p>Longitude values are evenly spaced moving eastward from Greenwich (the jth grid point has an east longitude value of (j-1)×360°/1024). Latitude values are Gauss-Legendre points beginning close to the North Pole and ending near the South Pole. Kernels associated with sensitivities to Antarctic melt are given on a spatial grid covering the globe, with 256 (Gauss-Legendre) latitude rows (i=1,256) and 512 longitude (j=1,512) columns. Longitude values are evenly spaced moving eastward from Greenwich.</p> <p>The format of the files is: </p> <p> grid_sitenumber_region.txt</p> <p>where “region” is either “green” (Greenland), “ant” (Antarctic) or “Alaska” (Alaska). The list of sites (and site numbers) is provided in the sites.txt file. The first 8 sites in this list were test sites and can be ignored.</p>
The mass of the lowermost stratosphere (LMS): LMS mass calculation and trends in five reanalyses for the time period 1979–2019
<p><strong>Description</strong></p> <p>Python code to calculate the mass of the lowermost stratosphere (LMS) and investigate LMS mass trends with the dynamic linear regression model (DLM, Laine et al. 2014, Alsing 2019) as presented in Weyland et al. (2024). The LMS mass is calculated via a three dimensioal integral, following Appenzeller et al. (1996), given an upper and lower LMS boundary surface (4D pressure fields). Here, the lateral boundary is determined via the intersection of the tropopause with the 350K isentrope (4D pressure field). The upper LMS boundary can be defined by the isentrope according to the potential temperature at the tropical lapse rate tropopause (PPT10mean) or the cold point (PPTcp10mean) or approximated by the 380K isentrope. See Weyland et. al (2024) for further description and context.</p> <p>The mass calculation is performed with calc_LMS_mass.py.</p> <p>The DLM trend analysis is conducted with dlm_LMS_mass.py, using dlm_modules.py. In order to be able to use the provided code, the dlmmc model code has to be downloaded from <a href="https://github.com/justinalsing/dlmmc">https://github.com/justinalsing/dlmmc</a> (Alsing 2019).</p> <p>The neccesary 3D (time, lat, lon) pressure fields to define the LMS boundaries are provided for the time period 1979–2019<sup>1</sup> from five modern reanalyses: ERA5<sup>2</sup> (Hersbach et al., 2020), ERA-Interim (Dee et al., 2011), MERRA-2 (Gelaro et al., 2017) and JRA-55 (Kobayashi et al., 2015) and JRA3Q (Kosaka et al., 2024):</p> <ul> <li>lrtp*.nc : <ul> <li>3D (time, lat, lon) pressure, temperature and potential temperature at the WMO lapse rate tropopause for the time period 1979-2019<sup>1</sup>, derived from monthly mean data on pressure levels from the respective reanalysis. The lapse rate detection algorithm closely follows that of Birner et al. (2010), based on the work of Reichler et al. (2003). The lapse rate tropopause can serve as the lower LMS boundary. The potential temperature at the lapse rate tropopause between 10°N-10°S is used to define a „dynamic“ upper LMS boundary (PPT10mean).</li> </ul> </li> </ul> <ul> <li>cp*.nc : <ul> <li>3D (time, lat, lon) pressure, temperature and potential temperature at the cold point for the time period 1979–2019<sup>1 </sup>, derived from monthly mean data on pressure levels from the respective reanalysis. The cold point here is defined by the pressure corresponding to a lapse rate of 0K/km. The potential temperature at the cold point between 10°N–10°S is used to define a „dynamic“ upper LMS boundary (PPTcp10mean).</li> </ul> </li> </ul> <ul> <li>ppt10mean*.nc : <ul> <li>3D (time, lat, lon) pressure at the isentrope accroding to the potential temperature at the tropical (10°N–10°S) lapse rate tropopause (PPT10mean) for the time period 1979–2019<sup>1</sup>, derived from lrtp*.nc. PPT10mean can be used to define the upper LMS boundary.</li> </ul> </li> </ul> <ul> <li>pptcp10mean*.nc : <ul> <li>3D (time, lat, lon) pressure at the isentrope accroding to the potential temperature at the cold point between 10°N-10°S (PPTcp10mean) for the time period 1979–2019<sup>1</sup>, derived from cp*.nc. PPTcp10mean can be used to define the upper LMS boundary.</li> </ul> </li> </ul> <ul> <li>p380K*.nc : <ul> <li>3D (time, lat, lon) pressure at the 380K isentrope for the time period 1979–2019<sup>1</sup>, derived from monthly mean data on pressure levels from the respective reanalysis. The 380K isentropic pressure field can be used to approximate the upper LMS boundary.</li> </ul> </li> </ul> <ul> <li>p350K*.nc : <ul> <li>3D (time, lat, lon) pressure at the 350K isentrope for the time period 1979–2019<sup>1</sup>, derived from monthly mean data on pressure levels from the respective reanalysis. The 350K isentrope is used to determine the lateral LMS boundaries via its intersection with the tropopause. This intersection approximates the location of the subtropical jet streams and the maximum PV-gradient, marking a transport barrier. It is determined by the sign change of the pressure difference between the tropopause and the 350K isentrope.</li> </ul> </li> </ul> <ul> <li>my_enso_79-19.txt : <ul> <li>Regressor to account for El-Niño/Southern Oscillation for the time period 1979–2019. Source: <a href="https://psl.noaa.gov/enso/mei/">https://psl.noaa.gov/enso/mei/</a>, last accessed: 11 July 2023. The data has been normalized and centered around zero. The use of regressors is optional.</li> </ul> </li> </ul> <ul> <li>my_qbo30_79-19.txt and my_qbo50_79-19.txt : <ul> <li>Regressor to account for the quasi-biennial oscillation at 30 and 50 hPa for the time period 1979–2019. Source: <a href="https://www.geo.fu-berlin.de/met/ag/strat/produkte/qbo/qbo.dat">https://www.geo.fu-berlin.de/met/ag/strat/produkte/qbo/qbo.dat</a>, last accessed: 11 July 2023. The data has been normalized and centered around zero. The use of regressors is optional.</li> </ul> </li> </ul> <ul> <li>my_SAOD_79-19.txt : <ul> <li>Regressor to account for stratospheric (volcanic) aerosol optical depth for the time period 1979-2019. Source: <a href="https://asdc.larc.nasa.gov/project/GloSSAC/GloSSAC_1.0">https://asdc.larc.nasa.gov/project/GloSSAC/GloSSAC_1.0</a>, last accessed: 11 July 2023. The data has been normalized. The use of regressors is optional.</li> </ul> </li> </ul> <p> </p> <p>For further details see Weyland et al. (2024).</p> <p><sup>1</sup>Note that the ERA-Interim time series ends in 2018 and that the MERRA-2 time series starts in 1980.</p> <p><sup>2</sup>For the time period 2000–2006, the sub-reanalysis ERA5.1 replaces ERA5, correcting the reanalysis for a cold bias in the lower stratosphere (Simmons et al., 2020).</p> <p> </p> <p><strong>How to use – example: </strong></p> <p>Assuming you are interested in the LMS mass between a lower boundary (-lb, e.g., the lapse rate tropopause) and an upper boundary (-ub, e.g., the 380K isentrope) in ERA5 for the entire Northern hemisphere (-lat=NH) covering the time period 1979-2019:</p> <p> </p> <ul> <li> <p>Calculate the respective LMS mass timeseries:</p> <p><strong>$ python calc_LMS_mass.py -lb=lrtp_ERA5.nc -ub=p380K_ERA5.nc -latb=p350K_ERA5.nc -lat=NH -fout=LMS_mass_ERA5_lrtp_p380K_NH.nc</strong></p> <p>Isentropic pressure at 350K (-latb) is required to determine the lateral LMS boundary. The LMS mass time series together with an uncertainty estimate is saved to a netCDF file (-fout), e.g. „LMS_mass_ERA5_lrtp_p380K_NH.nc“.</p> </li> </ul> <p> </p> <ul> <li> <p>Perform a DLM trend analysis for your LMS mass time series, here LMS_mass_ERA5_lrtp_p380K_NH.nc (-mf) :</p> <p>Download the DLM model code (dlmmc) from <a href="https://github.com/justinalsing/dlmmc">https://github.com/justinalsing/dlmmc</a> (Alsing 2019) and save the „dlmmc“ folder, containing the DLM modules in your working directory.</p> </li> </ul> <p><strong>$ python dlm_lms_mass.py -mf=LMS_mass_ERA5_lrtp_p380K_NH.nc -s=2000</strong></p> <p>In this example, the DLM will provide 2000 samples (-s) after an additional 1000 warm-up samples.</p> <p>The DLM time series, containing 2000 samples (-s) per time step, is saved to a netCDF file. The name of the output file can be specifyed with -fout. Default is „dlm_“ + mf, i.e. „dlm_ LMS_mass_ERA5_lrtp_p380K_NH.nc“ in this example.</p> <p>The function dlm_lms_mass.dlm_lms_mass contains an option to visualize the DLM result (plot=True). Furthermore, it can be specified whether the DLM should be run with regressors (use_regressors=True) or without regressors (use_regressors=False).</p> <p>See the DLM documentation (Laine et al. 2014, Alsing 2019) for further options.</p> <p> </p> <p><strong>Funding</strong>: This work was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – TRR 301 – Project-ID 428312742: “The tropopause region in a changing atmosphere”.</p>
SERENA EJPSOIL PL EROSION CONTROL SOIL MASS NOT ERODED
<p>General description of SERENA</p> <p>The internal EJP SOIL project SERENA contributed to the evaluation of soil multifunctionality aiming at providing assessment tools for land planning and soil policies at different scales. By co-working with relevant stakeholders, the project provided co-developed indicators and associated cookbooks to assess and map them, to report both on soil degradation, soil-based ecosystem services and their bundles, under actual conditions and for climate and land-use changes, at the regional, national, and European scales.</p> <p>Files description</p> <p>Data was prepared as a result of SERENA EJP SOIL. The attached files are a part of the analysis of Assessment of Soil Threats and Ecosystem Services from each MS with the harmonized procedures. SERENA deliverable 3.3 (https://doi.org/10.5281/zenodo.13991087). The RUSLE method was used to prepare the attached files. </p>
Root Biomass, Fine Root Production, Soil Mass, and Soil pH in Limed and Control Plots at the Woods Lake Watershed, Adirondack Park, NY, USA, 2021-2022
In 1989, 6.89 Mg/ha of pelletized lime (CaCO3) was applied by helicopter to two subcatchments at the Woods Lake Watershed in Adirondack Park, New York, USA to ameliorate ecosystem acidification. Two unlimed (control) subcatchments were paired with limed subcatchments. In the same year, 99 permanent plots (20 m x 20 m) were established. Between 2008 and 2010, tree inventory and soil physicochemical measurements were made in five plots in each of the four subcatchments (20 plots total). This dataset contains soil physicochemical properties (dry mass, depth, and pH); root biomass (<1 mm, 1-2 mm, and >2 mm diameter); and annual fine root production (<1 mm and 1-2 mm) measurements made between 2021 and 2022 in 19 of these same plots (5 plots per control subcatchment and 4 or 5 plots per limed subcatchment). Data include measurements for all properties for Oe, Oa, and 0-10 cm mineral soil samples collected from 5 locations within each plot.
Mass per tiller, nitrogen concentration, stable isotope ratios for carbon and nitrogen from the 1980-82 Eriophorum vaginatum reciprocal transplant experiment along a latitudinal gradient in interior Alaska collected in July, 2011
In 1980-1982, six transplant gardens were established along a latitudinal gradient in interior Alaska from Eagle Creek, AK in the south to Prudhoe Bay, AK in the north. Three sites, Toolik Lake (TL), Sagwon (SAG), and Prudhoe Bay (PB) are north of the continental divide and the remaining three, Eagle Creek (EC), No Name Creek (NN), and Coldfoot (CF), are south of the continental divide. Each garden consisted of 10 individual Eriophorum vaginatum tussocks transplanted back to their home-site, as well as 10 individuals from each of the other transplant sites. The gardens were harvested in 2011. Important variables are garden name, source population, mass per tiller, nitrogen concentration, and stable isotope ratios for Carbon and Nitrogen.
Global Climate Change Impacts on the Vegetation and Fauna of Mangrove Forested Ecosystems in Florida (FCE): Nekton Mass from March 2000 to April 2004
Bottomless lift nets are buried within the mangrove forest floor and raised remotely on slack high spring tides to enclose a 6m2 area. As the tide ebbs, fishes retreat into a subtidal refuge cleared when the tide has fallen. Three replicate nets have been sampled at 3 locations along a salinity gradient on Shark River for 4 years. Small resident forage fish and grass shrimp dominate the collections. Exotic species and estuarine transient species that use the estuary as a nursery are rare within the assemblage of fishes that routinely use the flooded forest.
DOM composition changes in Altamaha River and Sapelo Sound estuaries measured by FT-ICR mass spectrometry from September 2015 to September 2016
Dissolved organic matter (DOM) is a large and complex mixture of compounds with source inputs that differ with location, season and environmental conditions. Here, we investigated drivers of DOM composition changes in a marsh-dominated estuary off the southeastern U.S. Monthly water samples were collected at a riverine and estuarine site from September 2015 to September 2016, and bulk, optical, and molecular analyses were conducted on samples before and after dark incubations. Results showed that river discharge was the primary driver changing the DOM composition at the mouth of the Altamaha River. For discharge higher than ~ 150 m3 s-1, DOC concentrations and the terrigenous character of the DOM increased approximately linearly with river flow. For low discharge conditions, a clear signature of salt marsh-derived compounds was observed in the river. At the head of Sapelo Sound, changes in DOM composition were primarily driven by river discharge and possibly by summer algae blooms. Microbial consumption of DOC was larger during periods of high discharge at both sites, potentially due to the higher mobilization and influx of fresh material to the system. The Georgia coast was hit by Hurricane Matthew in October 2016, which resulted in a large input of carbon to the estuary. The DOC concentration was ~ 2 times higher and DOM composition was more aromatic with a stronger terrigenous signature compared to the seasonal maximum observed earlier in the year during peak river discharge conditions. This suggests that extreme events notably impact DOM quantity and quality in estuarine regions.
DOM composition in Altamaha River and Sapelo Sound estuaries measured by FT-ICR mass spectrometry in 2017 (April, July, October) and 2018 (January and October)
Extreme events such as hurricanes and tropical storms often result in large fluxes of dissolved organic carbon (DOC) to estuaries. Precipitation associated with tropical storms may be increasing in the southeastern U.S., which can potentially impact dissolved organic matter (DOM) dynamics and cycling in coastal systems. Here, DOM composition at the Altamaha River and Estuary (Georgia, U.S.A.) was investigated over multiple years capturing seasonal variations in river discharge, high precipitation events, and the passage of two hurricanes which resulted in substantial storm surges. Optical measurements of DOM indicate that the terrigenous signature in the estuary is linearly related to freshwater content and is similar after extreme events with or without a storm surge and during peak river flow. Molecular level analysis revealed significant differences, however, with a large increase of highly aromatic compounds after extreme events exceeding what would be expected by freshwater content alone. Although extreme events are often followed by increased DOC biodegradation, the terrigenous material added during those events does not appear to be more labile than the remainder of the DOM pool that was captured by ultrahigh-resolution mass spectrometry analysis. This suggests that the added terrigenous organic matter may be exported to the coastal ocean, while a fraction of the organic matter that co-varied with the terrigenous DOM may contribute to the increased biomineralization in the estuary, with implications to carbon processing in coastal areas.
Mass and Chemistry of Organic Horizons and Surface Mineral Soils on Watershed 6 at the Hubbard Brook Experimental Forest, 1976 - present
The forest floor of Watershed 6 was first sampled in 1969-70. These data include forest floor thickness, soil mass, organic matter content, and major-element composition for samples collected since 1976. Watershed 6 has been resampled at intervals varying from one to ten years. Sampling at five to ten year intervals is expected to continue. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.