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ShareScore release 0.9.0
Dataset results
2 results for “matrix units”
Distance matrix for UNITE sequences
<p>Flattened and compressed version of 2 pairwise distance matrices corresponding to <a href="https://doi.org/10.15156/BIO/1264708">this</a> UNITE release.</p> <p>Can be imported in a pipeline for building an overarching fungal phylogeny for UNITE (<a href="https://github.com/luukromeijn/MDDB-phylogeny">Github source code</a>). </p> <p>Importing might take up to an hour, but this is still much quicker than the 36-hours pairwise distance calculation. </p> <p>The 6-mer Google distance is way more accurate than the w-metric, so we highly recommend using the 6-mer Google distance.</p> <p>More documentation can be found <a href="https://github.com/luukromeijn/MDDB-phylogeny#readme">here</a>.</p>
FIGURE 5. Maximum likelihood tree built with concatenated matrix using cytochrome oxidase sub-united I in New species of Trichomycterus (Siluriformes: Trichomycteridae) lacking pelvic fins from Paranapanema basin, southeastern Brazil
FIGURE 5. Maximum likelihood tree built with concatenated matrix using cytochrome oxidase sub-united I (COI) and 16S genes, showing the relationships of Trichomycterus pascuali within Trichomycterinae. Numbers on branches of tree denote bootstrap (B) values.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.