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ShareScore release 0.9.0
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55 results for “metabolic condition”
Metabolic profiling and antibacterial activity of tree wood extracts obtained under variable extraction conditions
<p>Scripts and dataset for Vinchira-Villarraga et al., 2024 "Metabolic profiling and antibacterial activity of tree wood extracts obtained under variable extraction conditions". The files label as A1, C6, H2/HCN2 and O1 correspond to the dataset obtained for Ash, Cherry, Horse-chestnut and Oak respectively. </p> <p>_batch.xml files contains the script for the pre-processing of .mzML mass spectrometry data created on MzMine 3.2.8. The file can be uploaded to newer versions of MzMine, but due to the addition of new modules, some parameters name have changed.</p> <p>_SIRIUS.mfg files contains the mass spectrometry data of each dataset for analysis in SIRIUS. The files were used for chemical formula prediction, classification and compound annotation using SIRIUS 5.0</p> <p>_quant.csv correspond to the output matrix as it was obtained from MzMine without noise, adducts and highly variable features filtering.</p> <p>_abundance.csv correspond to the output matrix after noise, adducts and highly variable features filtering.</p>
Dataset - Spatio-temporal modeling of the crowding conditions and metabolic variability in microbial communities
<p><strong>Dataset simulated for the manuscript "Spatio-temporal modeling of the crowding conditions and metabolic variability in microbial communities" by Angeles-Martinez and Hatzimanikatis.</strong></p>
Metabolic and behavioral adaptations of greater white-toothed shrews to urban conditions
<p class="MsoNoSpacing">The global trend of urbanization is creating novel challenges to many animal species. Studies investigating behavioral differences between rural and urban populations often report a general increase in risk-taking behaviors in urban populations. According to the most common energy management model (the performance model), behaviors that increase access to resources, such as aggression and boldness, and behaviors that consume net energy, like locomotion and stress responses, are both positively correlated to resting metabolic rate (RMR). Thus, we expect urban populations to not only exhibit a higher level of risk-taking behavior but also a higher RMR. However, these interactions remain poorly investigated. Our main goal was to analyze the relationship between RMR and risk-taking behaviors in the greater white-toothed shrew (<i>Crocidura russula</i>) in rural vs. urban populations. Trapped shrews were brought to captivity where we measured RMR, boldness and exploration rate three times in each individual. Our findings revealed urban shrews were indeed bolder and more exploratory, but contrary to our expectations, their RMR was lower than that of rural shrews. This is likely explained by differences in the environmental conditions of these two habitats, such as higher ambient temperatures and/or lower prey availability in cities. When looking at each population separately, this relationship remained similar: urban shrews with a higher RMR were less bold, and rural shrews with a higher RMR showed a lower exploration rate. We conclude the energetic strategy of <i>C. russula</i> is dependent on the environmental and observational context and cannot be explained by the performance model.</p>
Coral community metabolism during year-long exposure to experimental elevated CO2 conditions
<p>The implications of ocean acidification are acute for calcifying organisms, notably tropical reef corals, for which accretion generally is depressed and dissolution enhanced at reduced seawater pH. We describe year-long experiments in which back reef and fore reef (17-m depth) communities from Moorea, French Polynesia, were incubated outdoors under pCO<sub>2</sub> regimes reflecting endpoints of representative concentration pathways (RCPs) expected by the end the century. Incubations were completed in 3–4 flumes (5.0 × 0.3 m, 500 L) in which seawater was refreshed and circulated at 0.1 m s<sup>-1</sup>, and the response of the communities was evaluated monthly by measurements of net community calcification (NCC) and net community photosynthesis (NCP). For both communities, NCC (but not NCP) was affected by treatments and time, with NCC declining with increasing pCO<sub>2</sub>, and for the fore reef, becoming negative (i.e., dissolution was occurring) at the highest pCO<sub>2</sub> (1067–1433 µatm, RCP8.5). There was scant evidence of community adjustment to reduce the negative effects of ocean acidification, and inhibition of NCC intensified in the back reef as the abundance of massive <em>Porites</em> spp. declined. These results highlight the risks of dissolution under ocean acidification for coral reefs and suggest these effects will be most acute in fore reef habitats. Without signs of amelioration of the negative effects of ocean acidification during year-long experiments, it is reasonable to expect that the future of coral reefs in acidic seas can be predicted from their current known susceptibility to ocean acidification.</p>
Effects of a Package of Evidence-based Interventions and Implementation Strategies Based on WHO PEN for People Living With HIV and Cardio-metabolic Conditions in Lusaka, Zambia
ClinicalTrials.gov study NCT05950919. IPD Sharing: YES. Countries: 1. Publications: 1.
Metabolic and behavioral adaptations of greater white-toothed shrews to urban conditions
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Coral community metabolism during year-long exposure to experimental elevated CO2 conditions
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Dataset. Socio-ecological metabolism and rural livelihood conditions: two case studies on forest litter uses in France and Poland (1875-1910)
<p>This Datasets is the supplementary Material to the paper :"Socio-ecological metabolism and rural livelihoo conditions: two case studies on forest litter uses in France and Poland (1875-1910)".</p>
Evaluation of Adults With Endocrine and Metabolic-Related Conditions
ClinicalTrials.gov study NCT02830308. IPD Sharing: YES. Countries: 1. Publications: 1.
Influence of Meal Skipping on Macronutrient Oxidation and Glucose Metabolism Under Isocaloric Conditions
ClinicalTrials.gov study NCT02635139. IPD Sharing: NO. Countries: 1. Publications: 1.
Dataset of the article : Socio-ecological metabolism and rural livelihood conditions: two case studies on forest litter uses in France and Poland (1875-1910)
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Variability in Human Fatty Acids Profiles Based on Blood Fractions and Metabolic Conditions
ClinicalTrials.gov study NCT06731400. IPD Sharing: NO. Countries: 0. Publications: 3.
Data from: Thermal biology of flight in a butterfly: genotype, flight metabolism, and environmental conditions
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TWIST1 is required for HSC maintenance under steady state and stress condition by inhibiting mitochondrial metabolism gene program
GEO Series GSE133682. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
RNA-seq profiles of C. elegans with various dietary conditions and gene perturbations related to vitamin B12 metabolism
GEO Series GSE255866. Caenorhabditis elegans. 10 samples. Type: Expression profiling by high throughput sequencing.
Quantitative transcriptomic analysis of wild type and metabolic mutants of Clostrdidium acetobutylicum ATCC824 under different physiological conditions
GEO Series GSE69973. Clostridium acetobutylicum ATCC 824. 36 samples. Type: Expression profiling by array.
Integrated Transcriptomic and Metabolomic Analyses Reveal Distinct Energy Metabolic Signatures and Functional Properties of RPE Cells under Two Culture Conditions
GEO Series GSE318428. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic analysis of Steinernema nematodes highlights metabolic costs associated to Xenorhabdus endosymbiont association and rearing conditions
GEO Series GSE185177. Steinernema puntauvense; Steinernema carpocapsae. 6 samples. Type: Expression profiling by high throughput sequencing.
Profiling of lncRNAs and mRNAs in liver, adipose and muscle tissue in mice under representative metabolic conditions
GEO Series GSE85439. Mus musculus. 106 samples. Type: Expression profiling by array; Non-coding RNA profiling by array.
Metabolic conditioning of CD8+ effector T cells for adoptive cell therapy
GEO Series GSE152018. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.