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35 results for “miRNAome”
A combined transcriptome - miRNAome approach revealed that a kinesin gene is differentially targeted by a novel miRNA in an apomictic genotype of Eragrostis curvula
<p>Weeping lovegrass (<em>Eragrostis curvula</em> [Shrad.] Nees) is a perennial grass typically established in semi-arid regions, with good adaptability to dry conditions and sandy soils. This polymorphic complex includes both sexual and apomictic cytotypes, with different ploidy levels (2x-8x). Diploids are known to be sexual, while most polyploids are facultative apomicts, and full apomicts have also been reported. Plant breeding studies throughout the years have focused on achieving the introgression of apomixis into species of agricultural relevance, but, given the complexity of the trait, a deeper understanding of the molecular basis of regulatory mechanisms of apomixis is still required. Apomixis is thought to be associated with silencing or disruption of the sexual pathway, and studies have shown it is influenced by epigenetic mechanisms. In a previous study, we explored the role of miRNA-mRNA interactions using two contrasting <em>E. curvula</em> phenotypes. Here, the sexual OTA-S, the facultative Don Walter and the obligate apomictic Tanganyika cDNA and sRNA libraries were inquired, searching for miRNA discovery and miRNA expression regulation of genes related to the reproductive mode. This allowed for the characterization of seven miRNAs and the validation of their miRNA-target interactions. Interestingly, a <em>kinesin</em> gene was found to be repressed in the apomictic cultivar Tanganyika, targeted by a novel miRNA that was found to be overexpressed in this genotype, suggestive of an involvement in the reproductive mode expression. Our work provided additional evidence of the contribution of the epigenetic regulation of the apomictic pathway.</p>
Isolation, characterization, proteome, miRNAome, and the embryotrophic effects of chicken egg yolk nanovesicles (vitellovesicles)
GEO Series GSE219218. Gallus gallus. 3 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Genome-wide identification and characterization of miRNAome from tomato roots (Solanum lycopersicum) and root-knot nematode (Meloidogyne incognita) during susceptible and resistant interactions.
GEO Series GSE87651. Solanum lycopersicum. 11 samples. Type: Non-coding RNA profiling by high throughput sequencing.
The role of cardiac transcription factor NKX2-5 in regulating the human cardiac miRNAome.
GEO Series GSE134852. Homo sapiens. 15 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Determination of the effects of endurance exercise training on the human skeletal muscle miRNAome by miRNA sequencing
GEO Series GSE127187. Homo sapiens. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Comprehensive analysis of hippocampal miRNAomes in humans and mice.
GEO Series GSE107496. Homo sapiens; Mus musculus. 14 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Rumen fluid miRNAome of dry cows transitioned from forage to 65% grain diet
GEO Series GSE195757. Bos taurus. 8 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Dose and temporal effects of Phenobarbital on the liver miRNAome of male Fischer rats
GEO Series GSE48489. Rattus norvegicus. 48 samples. Type: Non-coding RNA profiling by array.
The miRNAome of O. viverrini induced cholangiocarcinoma by microarray:
GEO Series GSE53992. Homo sapiens. 46 samples. Type: Non-coding RNA profiling by array.
Bovine hepatic miRNAome profiling and differential miRNA expression analyses between beef steers with divergent feed efficiency phenotypes
GEO Series GSE144432. Bos taurus. 60 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Circulating miRNAome of dry cows transitioned from forage to 65% grain diet
GEO Series GSE198854. Bos taurus. 14 samples. Type: Non-coding RNA profiling by high throughput sequencing.
A Genome-Wide Identification of the miRNAome in Response to Salinity Stress in the Date palm tree (Phoenix dactylifera L.)
GEO Series GSE71445. Phoenix dactylifera. 4 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Identification and characterization of miRNAome in root, stem, leaf and tuber developmental stages of potato (Solanum tuberosum L.) by high-throughput sequencing
GEO Series GSE52599. Solanum tuberosum. 7 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Effect of treatment for three months with chemical carcinogen and non-carcinogens on liver miRNAome
GEO Series GSE48492. Rattus norvegicus. 38 samples. Type: Non-coding RNA profiling by array.
Reference Genes for MiRNAome Analysis of Urothelial Carcinomas
GEO Series GSE36121. Homo sapiens. 24 samples. Type: Non-coding RNA profiling by array.
A genome-wide perspective of miRNAome in response to high temperature, salinity and drought stresses in Brassica juncea (Czern) L.
GEO Series GSE53242. Brassica juncea. 4 samples. Type: Expression profiling by high throughput sequencing.
Integrated analysis of transcriptome and miRNAome reveals the heat stress response of Pinellia ternata seedlings
GEO Series GSE243965. Pinellia ternata. 12 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Effect of mir-210 over-expression on the miRNAome of human umbilical vein endothelial cells
GEO Series GSE35365. Homo sapiens; Mus musculus; Human alphaherpesvirus 1; Human betaherpesvirus 5; Murid betaherpesvirus 1; Human immunodeficiency virus 1; Murid gammaherpesvirus 4; Rattus norvegicus; JC polyomavirus; Human gammaherpesvirus 8; Betapolyomavirus hominis; human gammaherpesvirus 4; Betapolyomavirus macacae. 1 samples. Type: Non-coding RNA profiling by array.
The small RNA diversity from Medicago truncatula roots under biotic interactions evidences the environmental plasticity of the miRNAome
GEO Series GSE49226. Medicago truncatula. 23 samples. Type: Non-coding RNA profiling by high throughput sequencing.
The miRNAome of the postpartum dairy cow liver in negative energy balance
GEO Series GSE55882. Bos taurus. 8 samples. Type: Non-coding RNA profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.