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Dataset results
281 results for “microRNA (miRNA)”
Interactive Web-based Annotation of Plant MicroRNAs with iwa-miRNA
<p>MicroRNAs (miRNAs) are important regulators of gene expression. The large-scale detection and profiling of miRNAs has accelerated with the development of high-throughput small RNA sequencing (sRNA-Seq) techniques and bioinformatics tools. However, generating high-quality comprehensive miRNA annotations remains challenging, due to the intrinsic complexity of sRNA-Seq data and inherent limitations of existing miRNA predictions. Here, we present iwa-miRNA, a Galaxy-based framework that can facilitate miRNA annotation in plant species by combining computational analysis and manual curation. iwa-miRNA is specifically designed to generate a comprehensive list of miRNA candidates, bridging the gap between already annotated miRNAs provided by public miRNA databases and new predictions from sRNA-Seq datasets. It can also assist users to select promising miRNA candidates in an interactive mode through the automated and manual steps, contributing to the accessibility and reproducibility of genome-wide miRNA annotation. iwa-miRNA is user-friendly and can be easily deployed as a web application for researchers without programming experience. With flexible, interactive, and easy-to-use features, iwa-miRNA is a valuable tool for annotation of miRNAs in plant species with reference genomes. We illustrated the application of iwa-miRNA for miRNA annotation of plant species with varying complexity. The sources codes and web server of iwa-miRNA is freely accessible at: <a href="http://iwa-miRNA.omicstudio.cloud">http://iwa-miRNA.omicstudio.cloud</a>/.</p>
MicroRNA-1 (miRNA-1) and MicroRNA-133a (miRNA-133a) Levels After Acute Exercise in Ultimate Frisbee Athletes
ClinicalTrials.gov study NCT06083610. IPD Sharing: UNDECIDED. Countries: 1. Publications: 3.
The Study of microRNA 107 (miRNA 107) and Beta-amyloid Precursor Protein-cleaving Enzyme 1 (BACE1) Messenger Ribonucleic Acid (mRNA) Gene Expression in Cerebrospinal Fluid and Peripheral Blood of Alzh
ClinicalTrials.gov study NCT01819545. IPD Sharing: Not stated. Countries: 1. Publications: 2.
miRNAs, Suicide, and Ketamine - Plasma Exosomal microRNAs as Novel Biomarkers for Suicidality and Treatment Outcome
ClinicalTrials.gov study NCT02418195. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Alterations in serum microRNA in humans with alcohol use disorders impact cell proliferation and cell death pathways and predict structural and functional changes in brain [rat miRNA-Seq]
GEO Series GSE71697. Rattus norvegicus. 20 samples. Type: Non-coding RNA profiling by high throughput sequencing.
MicroRNA analysis of the bovine alveolar macrophage response to Mycobacterium bovis infection suggests pathogen survival is enhanced by miRNA regulation of endocytosis and lysosome trafficking
GEO Series GSE58883. Bos taurus. 88 samples. Type: Non-coding RNA profiling by high throughput sequencing.
High-throughput microRNA (miRNAs) arrays in pancreatic cancer
GEO Series GSE38781. Homo sapiens. 19 samples. Type: Non-coding RNA profiling by array.
Integrated Analysis of Hub Genes and MicroRNAs in Human Placental Tissues from In Vitro Fertilization-Embryo Transfer [miRNA-seq]
GEO Series GSE186148. Homo sapiens. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Integrated analysis of messenger RNA and microRNA in patients with community-acquired pneumonia associated sepsis (miRNA part)
GEO Series GSE228540. Homo sapiens. 29 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Integrated analysis of microRNA and mRNA expression and association with HIF binding in MCF-7 cells under hypoxia (miRNA-Seq)
GEO Series GSE47602. Homo sapiens. 8 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Association between distinct gene and miRNA expression profiles and utilization of stereotyped subset #4 in the cells of CLL patients [MicroRNA Profiling]
GEO Series GSE51527. Homo sapiens. 242 samples. Type: Non-coding RNA profiling by array.
Loss of motoneuron-specific microRNA-218 causes systemic neuromuscular failure [miRNA-seq]
GEO Series GSE75600. Mus musculus. 7 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Src modulates its oncogenic signaling via regulation of miRNA-129-3p [microRNA]
GEO Series GSE121853. Mus musculus. 8 samples. Type: Non-coding RNA profiling by array.
Maternal recognition of pregnancy in the horse: are microRNAs the secret messengers? [miRNA-seq]
GEO Series GSE141443. Equus caballus. 28 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Microbial activities associated with human intestinal mucosal biofilms change mRNAs and microRNAs to promote carcinogenesis in mice [miRNA]
GEO Series GSE108164. Mus musculus. 21 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Gene and microRNA expression profiling of a melanoma cell line resistant to BRAF inhibitor PLX4032 compared to the parental sensitive counterpart (miRNA)
GEO Series GSE68839. Homo sapiens. 8 samples. Type: Non-coding RNA profiling by array.
Cartilage microRNA dysregulation during the onset and progression of mouse osteoarthritis is independent of aggrecanolysis and overlaps with candidates from end-stage human disease [miRNA]
GEO Series GSE93008. Mus musculus. 28 samples. Type: Non-coding RNA profiling by array.
Prognosis associated microRNA in peripheral blood mononuclear cells (PBMCs) from hepatitis B virus-related acute-on-chronic liver failure (HBV-ACLF) [miRNA]
GEO Series GSE168046. Homo sapiens. 16 samples. Type: Non-coding RNA profiling by array.
Targets mediated microRNA arm-imbalance promotes gastric cancer progression [miRNA]
GEO Series GSE133628. Homo sapiens. 14 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Validation of human microRNA target pathways enables evaluation of target prediction tools [miRNA]
GEO Series GSE135149. Homo sapiens. 8 samples. Type: Non-coding RNA profiling by array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.