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Dataset results
5 results for “mirbase”
miRNAture v.1.1: updated dataset with curated metazoan miRBase v.22.1 and Rfam-14.4 miRNA families.
<p>This folder contains the updated data to annotate miRNAs using miRNAture v.1.1. As usual, it includes CMs, HMMs and required pre-calculated data to validate mature miRNAs (corrected hairpins, mature files and miRBase genomes). It contains a 1034 and 1124 metazoan miRNA families curated from miRBase v.22.1 and Rfam 14.4, respectively. To use this dataset, refer the path of this uncompressed folder with the -dataF/-datadir flag in miRNature v.1.1.</p>
The miRBase release 22 reference files: stem-loop sequences (hairpins) and mature miRNA sequences
<pre>The miRBase Sequence Database -- Release 22 ------------------------------------------- The miRBase database provides a searchable online repository for published microRNA sequences and associated annotation. miRBase also provides a gene naming and nomenclature function in the miRBase Registry. Release 22 of the database contains 38589 entries representing hairpin precursor miRNAs, expressing 48885 mature miRNA products, in 271 species. The data are freely available to all through the web interface at http://www.mirbase.org/ and in flatfile form from ftp://mirbase.org/pub/mirbase/. </pre>
CLL exosomes modulate the transcriptome and behaviour of recipient stromal cells and are selectively enriched in miR-202-3p [mirBase 15]
GEO Series GSE70995. Homo sapiens; Macacine alphaherpesvirus 1; Human betaherpesvirus 5; Human immunodeficiency virus 1; Merkel cell polyomavirus; Herpesvirus saimiri (strain 11); Human gammaherpesvirus 8; JC polyomavirus; Betapolyomavirus hominis; Human alphaherpesvirus 1; Human alphaherpesvirus 2; human gammaherpesvirus 4; Human betaherpesvirus 6B; Betapolyomavirus macacae. 6 samples. Type: Non-coding RNA profiling by array.
Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of grapevine microRNAs deposited in miRBase
GEO Series GSE24531. Vitis vinifera. 1 samples. Type: Non-coding RNA profiling by high throughput sequencing.
CLL exosomes modulate the transcriptome and behaviour of recipient stromal cells and are selectively enriched in miR-202-3p [mirBase 13]
GEO Series GSE70994. Homo sapiens; Macacine alphaherpesvirus 1; Merkel cell polyomavirus; Human alphaherpesvirus 1; Human betaherpesvirus 5; human gammaherpesvirus 4; Human betaherpesvirus 6B; Betapolyomavirus macacae; Human alphaherpesvirus 2; Betapolyomavirus hominis; Herpesvirus saimiri (strain 11); JC polyomavirus; Human immunodeficiency virus 1; Human gammaherpesvirus 8. 6 samples. Type: Non-coding RNA profiling by array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.