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31 results for “mtCOI”
Figure 5 in A new species of Schizopera (Copepoda: Harpacticoida) from Japan, its phylogeny based on the mtCOI gene and comments on the genus Schizoperopsis
Figure 5. Schizopera abei sp. nov., line drawings, holotype female. (A) Rostrum dissected and flattened, lateral; (B) antennula, posterior; (C) antenna, posterior; (D) labrum, posterior; (E) paragnaths, anterior; (F) mandibula, posterior; (G) maxillula, posterior; (H) maxilla, posterior; (I) endopod of maxilla, antero-ventral; (J) maxilliped, anterior; (K) first leg, anterior. Arabic numeral 1 indicates the rostral sensillum.
Figure 3 in A new species of Schizopera (Copepoda: Harpacticoida) from Japan, its phylogeny based on the mtCOI gene and comments on the genus Schizoperopsis
Figure 3. Schizopera abei sp. nov., scanning electron micrographs, (A–E) a third paratype male from LBM1430005773; (F) a fourth paratype male from the same lot. (A) Habitus, ventral; (B) mouth appendages, ventral; (C) swimming legs, anterior; (D) third exopodal segment of third swimming leg, anterior; (E) left caudal ramus, ventral; (F) left fifth and sixth legs, ventral. Roman numerals for pores assigned consecutively from anterior to posterior end of each somite and caudal ramus, from dorsal to ventral side.
Figure 2 in A new species of Schizopera (Copepoda: Harpacticoida) from Japan, its phylogeny based on the mtCOI gene and comments on the genus Schizoperopsis
Figure 2. Schizopera abei sp. nov., scanning electron micrographs, a second paratype male from LBM1430005773. (A) Habitus, dorsal; (B) cephalothorax, dorsal; (C) anterior tip of cephalothorax and basal part of rostrum, dorsal; (D) free pedigerous somites, dorsal; (E) second to fifth urosomites, dorsal; (F) anal somite and caudal rami, dorsal. Arabic numerals for sensilla and Roman numeral for pores both assigned consecutively from anterior to posterior end of each somite, rostrum, and caudal ramus, and from dorsal to ventral side.
Figure 1 in A new species of Schizopera (Copepoda: Harpacticoida) from Japan, its phylogeny based on the mtCOI gene and comments on the genus Schizoperopsis
Figure 1. Schizopera abei sp. nov., scanning electron micrographs, (A–D) paratype female from LBM1430005773; (E–F) paratype male from the same lot. (A) Habitus, lateral; (B) cephalothoracic shield, lateral; (C) anterior part of cephalothoracic shield and rostrum, lateral; (D) tergites of free pedigerous somites, lateral; (E) habitus, lateral; (F) anal somites and caudal rami, lateral. Arabic numerals for sensilla and Roman numerals for pores consecutively from anterior to posterior end of each somite, rostrum, and caudal ramus, and from dorsal to ventral side.
Fig. 7 in Description of a new species of Phenacostethus (Atheriniformes: Phallostethidae) endemic to Kalimantan Selatan, Indonesian Borneo, reveals deep mtCOI divergence among miniature species
Fig. 7. Two stream habitats in Kalimantan Selatan sampled in 2007: A, Type locality of Phenacostethus sikat, the Jorong River at 20.7 m above sea level (3°58.794 S, 114°56.375 E). B, Sampanahan River at Sampanahan Hulu at 7 m above sea level (2°37.745 S, 116°11.170 E).
Fig. 6 in Description of a new species of Phenacostethus (Atheriniformes: Phallostethidae) endemic to Kalimantan Selatan, Indonesian Borneo, reveals deep mtCOI divergence among miniature species
Fig. 6. Collection localities of freshwater and coastal fishes from Kalimantan that included specimens of the genus Phenacostethus. TGK01/ TGK32 and TGK02, localities of Phenacostethus sikat. The holotype was collected at TGK01. TGK18 is the locality of Phenacostethus sp. 1, represented by one specimen (USNM 443825) distantly separated from Phe. sikat in mt COI data (see Table 4 and Discussion). Blue dots represent other localities sampled in August 2007 which included no phallostethid specimens. Yellow lines are roads. Base map from Microsoft Encarta Interactive World Atlas 2001.
Fig. 4 in Description of a new species of Phenacostethus (Atheriniformes: Phallostethidae) endemic to Kalimantan Selatan, Indonesian Borneo, reveals deep mtCOI divergence among miniature species
Fig. 4. Anterior portion of the body of specimens from which the caudal portion was removed in the field. DNA was extracted from the caudal portion for mtCOI (barcode) analysis. Above, Phenacostethus sikat, USNM 443826; below, Phenacostethus sp. 1, USNM 443825. Bars = 1 mm.
Fig. 3 in Description of a new species of Phenacostethus (Atheriniformes: Phallostethidae) endemic to Kalimantan Selatan, Indonesian Borneo, reveals deep mtCOI divergence among miniature species
Fig. 3. Phenacostethus sikat, holotype, MZB 25501, male, 13.4 mm SL. A, lateral view of head and priapium; B, ventral view of head and priapium; C, lateral view of priapium focused on brush—like seminal papilla. Phenacostethus smithi, USNM 329582, male, 16.1 mm SL. D, lateral view of head and priapium; E, ventral view of head and priapium; F, lateral view of priapium focused on ruffled seminal papilla. Bars = 1 mm.
Fig. 2. Phenacostethus sikat. A in Description of a new species of Phenacostethus (Atheriniformes: Phallostethidae) endemic to Kalimantan Selatan, Indonesian Borneo, reveals deep mtCOI divergence among miniature species
Fig. 2. Phenacostethus sikat. A, Holotype, MZB 25501, male, 13.4 mm SL. The caudal fin is damaged and incomplete. B, Paratype, USNM 443824, female, 13.8 mm SL. Bars = 1 mm.
Fig. 5 in Description of a new species of Phenacostethus (Atheriniformes: Phallostethidae) endemic to Kalimantan Selatan, Indonesian Borneo, reveals deep mtCOI divergence among miniature species
Fig. 5. MicroCT scans to illustrate skeletal and some soft tissue anatomy of the priapium in A, Phenacostethus sikat, MZB 25501, holotype, left lateral view of a sinistral male; and B, Phenacostethus smithi, USNM 329581, left lateral view of a dextral male. Names of priapial components follow Parenti (1989). The distal tip of the toxactinium, the prominent, anterior, hooked bone, is damaged in both specimens. Bars = 1 mm.
Fig. 1 in Description of a new species of Phenacostethus (Atheriniformes: Phallostethidae) endemic to Kalimantan Selatan, Indonesian Borneo, reveals deep mtCOI divergence among miniature species
Fig. 1. Distribution of the phallostethin fishes discussed herein. The genus Phenacostethus: Phe. sikat (black star, southeastern Borneo), Phe. sp. 1 (black diamond, southeastern Borneo), Phe. trewavasae (gray circles, Sarawak and Brunei, northwestern Borneo), Phe. smithi (black circles, Thailand, Cambodia, Sumatra, Peninsular Malaysia, Sarawak, and Brunei), and Phe. posthon (black squares, Thailand, Peninsular Malaysia, and Sumatra). Details of the collection localities of Phe. sikat are given in the text. The genus Phallostethus (black triangles): Pha. dunckeri (Muar, Peninsular Malaysia), Pha. cuulong (Vietnamese Mekong), and Pha. lehi (Sarawak and Brunei, northwestern Borneo). Map includes information from Roberts (1971a: fig. 1). Each symbol may represent more than one collection.
Fig. 2a in Prevalence of a new genetic group, MEAM-K, of the whitefly Bemisia tabaci (Hemiptera: Aleyrodidae) in Karnataka, India, as evident from mtCOI sequences
Fig. 2a. Phylogenetic tree showing the relationship of the Bemisia tabacimt mtCOI sequences collected in this study to consensus sequences of Dinsdale et al. (2010). Bayesian analyses were performed employing MrBayes under the best-fit model GTR+I+G of molecular evolution for 20 million generations and 25% discarded as burn-in. Posterior probabilities are shown above the branches and maximum likelihood scores from RaxML indicated below the branches. Asia-I condensed is shown in Fig. 2b.
Fig. 1 in Prevalence of a new genetic group, MEAM-K, of the whitefly Bemisia tabaci (Hemiptera: Aleyrodidae) in Karnataka, India, as evident from mtCOI sequences
Fig. 1. Map indicating different locations of Bemisia tabaci sampling and distribution of genetic groups in Karnataka, India.
Fig. 2b. Phylogenetic tree indicating the Asia-I in Prevalence of a new genetic group, MEAM-K, of the whitefly Bemisia tabaci (Hemiptera: Aleyrodidae) in Karnataka, India, as evident from mtCOI sequences
Fig. 2b. Phylogenetic tree indicating the Asia-I group, which was the most abundant genetic group in this study.
Fig. 3 in Prevalence of a new genetic group, MEAM-K, of the whitefly Bemisia tabaci (Hemiptera: Aleyrodidae) in Karnataka, India, as evident from mtCOI sequences
Fig. 3. Graph indicating net evolutionary divergence between groups of sequences.
Supplementary material 1 from: Lee G-E, Han T, Jeong J, Kim S-H, Park IG, Park H (2015) Molecular phylogeny of the genus Dicronocephalus (Coleoptera, Scarabaeidae, Cetoniinae) based on mtCOI and 16S rRNA genes. ZooKeys 501: 63-87. https://doi.org/10.3897/zookeys.501.8658
COI sequences dataset of Dicronocephalus species in this study.: Explanation note: This COI data includes 50 individual sequences of the examined Dicronocephalus species and subspecies in this study
Supplementary material 3 from: Lee G-E, Han T, Jeong J, Kim S-H, Park IG, Park H (2015) Molecular phylogeny of the genus Dicronocephalus (Coleoptera, Scarabaeidae, Cetoniinae) based on mtCOI and 16S rRNA genes. ZooKeys 501: 63-87. https://doi.org/10.3897/zookeys.501.8658
The combined dataset of COI and 16S rRNA of Dicronocephalus species in this study.: Explanation note: There is the concatenated sequences of COI and 16S rRNA genes correspondence with each sample.
Supplementary material 2 from: Lee G-E, Han T, Jeong J, Kim S-H, Park IG, Park H (2015) Molecular phylogeny of the genus Dicronocephalus (Coleoptera, Scarabaeidae, Cetoniinae) based on mtCOI and 16S rRNA genes. ZooKeys 501: 63-87. https://doi.org/10.3897/zookeys.501.8658
16S rRNA sequences data set of Dicronocephalus species in this study.: Explanation note: This 16S rRNA data includes 46 individual sequences of the examined Dicronocephalus species in this study.
Figure 6 in A new species of Schizopera (Copepoda: Harpacticoida) from Japan, its phylogeny based on the mtCOI gene and comments on the genus Schizoperopsis
Figure 6. Schizopera abei sp. nov., line drawings, (A–E) holotype female; (F) paratype female (LBM1430005762); (G) another paratype female (LBM1430005763). (A) Second leg, anterior; (B) third leg, anterior; (C) fourth leg, anterior; (D) left fifth leg, anterior; (E) abnormal exopod of right fifth leg, anterior; (F) exopod of left fifth leg, anterior; (G) exopod of right leg, anterior.
Figure 4 in A new species of Schizopera (Copepoda: Harpacticoida) from Japan, its phylogeny based on the mtCOI gene and comments on the genus Schizoperopsis
Figure 4. Schizopera abei sp. nov., line drawings. (A) Holotype female, urosome excluding fifth pedigerous somite, ventral; (B) allotype male, urosome, ventral. Arabic numerals for sensilla and Roman numerals for pores assigned consecutively from anterior to posterior end of each somite and caudal ramus, from dorsal to ventral side. Arrowheads point to the slender, minute outer principal seta on the caudal rami, the principal autapomorphy of the new species.
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