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402 results for “mtDNA”
FlowCytometry & CellCycle MtDNA
<p>In Saccharomyces cerevisiae, flow cytometry enables semi-quantitative estimation of mitochondrial DNA (mtDNA) levels by measuring the difference in signals between cells lacking mtDNA and those containing it. Using flow cytometry, we investigated mtDNA accumulation in yeast cells under G1 and G2 phase cell cycle arrest conditions, employing thermosensitive mutants cdc4-3 and cdc15-1. Here, we present the source flow cytometry data associated with our manuscript. Cell cycle arrest induced a several-fold increase in mtDNA accumulation in both mutants. The total DNA levels in arrested cells correlated with cell size, suggesting a relationship between individual cell mtDNA quantity and cellular dimensions.</p>
Figure 2. D in Neotypification of Drawida hattamimizu Hatai, 1930 (Annelida, Oligochaeta, Megadrili, Moniligastridae) as a model linking mtDNA (COI) sequences to an earthworm type, with a response to the 'Can of Worms' theory of cryptic species
Figure 2. D. hattamimizu unscaled habitus (from Watanabe, 2005, fig. 1 after Hatai's 1931 original).
FIGURE 2 in Flightless litter-dwelling Cotasterosoma (Coleoptera: Curculionidae: Cossoninae) found outside of Japan, with mtDNA phylogeography of a new species from Southwest China
FIGURE 2. Cotasterosoma coronus sp. n., paratype, female, specimen # 1110 from Mt. Emei. A – D: habitus; E – F: head and prothorax (E: ventral, F: lateral); G – I: distal part of right legs (G: fore-, H: mid-, I: hind-); J: genitalia, ventral; K: spermatheca.
FIGURE 1 in Flightless litter-dwelling Cotasterosoma (Coleoptera: Curculionidae: Cossoninae) found outside of Japan, with mtDNA phylogeography of a new species from Southwest China
FIGURE 1. Cotasterosoma coronus sp. n., holotype, male. A – D: habitus; E: genitalia and abdominal tergites 7 and 8, ventral; F – H: genitalia (F: dorsal, G: ventral, H: lateral).
Figure 24 in A morphological and mtDNA analysis of the badlands tiger beetle, Cicindela (s. str.) decemnotata Say, 1817 (Coleoptera: Carabidae: Cicindelinae) with the description of three new subspecies C. Barry Knisley
Figure 24. Map of Alaska and northwestern Canada showing know locals of C. d. decemnotata (blue star).
Figure 19. Labrum. A. C. d in A morphological and mtDNA analysis of the badlands tiger beetle, Cicindela (s. str.) decemnotata Say, 1817 (Coleoptera: Carabidae: Cicindelinae) with the description of three new subspecies C. Barry Knisley
Figure 19. Labrum. A. C. d. decemnotata, male, "MT: Yellowstone Co., NE of Billings, 15-IV-2010" (MGKC). B. C. d. decemnotata, female, "MT: Beaverhead Co., Centennial Valley, 25-VIII-2009" (MGKC). C. C. d. meriwetheri, female, "WA: Walla Walla Co., 24 September 2000, Hwy 12 2.8 m. E of Hwy 730" (MGKC). D. C. d. bonnevillensis, male, "UT: Tooele Co.: Dugway Proving Grounds, 10-V-2009" (MGKC).
Figure 21 in A morphological and mtDNA analysis of the badlands tiger beetle, Cicindela (s. str.) decemnotata Say, 1817 (Coleoptera: Carabidae: Cicindelinae) with the description of three new subspecies C. Barry Knisley
Figure 21. Comparison of congruent tree topologies recovered in phylogenetic reconstruction using maximum parsimony, Bayesian Inference, and Maximum Likelihood. Branches and taxa are color-coded according to match groups of sister species and subspecies of C. decemnotata postulated from morphology. Previously published sequences obtained from the NCBI database are marked with REF as their haplotype designation. A. The left cladogram represents one of thirty-one equally parsimonious rooted trees retrieved from unweighted reconstruction under a branch-and-bound search with a combined concatenated cob and cox1 dataset. This tree recovered a length of 42 for 1157 total characters; of which 17 (1.5% total sample) were potentially parsimony informative. Statistical supports>50% are given near their respective nodes in the form of Bootstrap values (BP), and third-delete Jackknife (JK). B. The middle cladogram represents the consensus rooted tree for a combined concatenated cob and cox1 dataset recovered from Bayesian Inference under a General Time Reversible (GTR) model with invariable base frequencies (I). Posterior Probabilities are given near their respective nodes. C. The right cladogram represents the best scoring rooted tree for a combined concatenated cob and cox1 dataset retrieved from maximum likelihood reconstruction under the GTR+I model.
Figure 17 in A morphological and mtDNA analysis of the badlands tiger beetle, Cicindela (s. str.) decemnotata Say, 1817 (Coleoptera: Carabidae: Cicindelinae) with the description of three new subspecies C. Barry Knisley
Figure 17. Overlap between middle band and subapical dot grading system. Overlap, or lack of, between apical lunule and post part of middle band; A. 0 (widely separate). B. 1 (separate). C. 2 (narrow overlap). D. 3 (broadly overlapped).
Figure 15. Apical lunule grading system. 0 in A morphological and mtDNA analysis of the badlands tiger beetle, Cicindela (s. str.) decemnotata Say, 1817 (Coleoptera: Carabidae: Cicindelinae) with the description of three new subspecies C. Barry Knisley
Figure 15. Apical lunule grading system. 0 to 3 refers to increasing size of apical lunule: A. 0 (absent). B. 1. C. 2. D. 3 (largest).
Figure 14. Middle band grading system. 1 in A morphological and mtDNA analysis of the badlands tiger beetle, Cicindela (s. str.) decemnotata Say, 1817 (Coleoptera: Carabidae: Cicindelinae) with the description of three new subspecies C. Barry Knisley
Figure 14. Middle band grading system. 1 to 7 refers to increasing size and completeness of middle band: A. 0 (absent). B. 1. C. 2. D. 3. E. 4. F. 5. G. 6. H. 7 (largest).
Figure 13. Humeral lunule grading system. 0 in A morphological and mtDNA analysis of the badlands tiger beetle, Cicindela (s. str.) decemnotata Say, 1817 (Coleoptera: Carabidae: Cicindelinae) with the description of three new subspecies C. Barry Knisley
Figure 13. Humeral lunule grading system. 0 to 3 refers to increasing size of humeral lunule: A. 0 (absent). B. 1. C. 2. D. 3 (largest).
Figure 16. Connection between subapical and apical dots grading system. 0 in A morphological and mtDNA analysis of the badlands tiger beetle, Cicindela (s. str.) decemnotata Say, 1817 (Coleoptera: Carabidae: Cicindelinae) with the description of three new subspecies C. Barry Knisley
Figure 16. Connection between subapical and apical dots grading system. 0 to 3 refers to connection between sub apical dot and apical dot: A. 0 (widely separate). B. 1 (separate). C. 2 (thin connection). D. 3 (broadly connected).
Figure 23 in A morphological and mtDNA analysis of the badlands tiger beetle, Cicindela (s. str.) decemnotata Say, 1817 (Coleoptera: Carabidae: Cicindelinae) with the description of three new subspecies C. Barry Knisley
Figure 23. Map of western United States and Canada showing know locals of C. d. decemnotata (blue star), C. d. meriwetheri (orange square), C. d. bonnevillensis (red triangle) and C. d. montevolans (olive green outlined circle). Shaded area represents the approximate size and location of Pleistocene Lake Bonneville.
Figure 10. Proepisternal color. A. Cicindela d in A morphological and mtDNA analysis of the badlands tiger beetle, Cicindela (s. str.) decemnotata Say, 1817 (Coleoptera: Carabidae: Cicindelinae) with the description of three new subspecies C. Barry Knisley
Figure 10. Proepisternal color. A. Cicindela d. decemnotata, male, "ID: Freemont Co., Targhee Nat. Forrest, 18- V-2007" (MGKC). B. Cicindela d. decemnotata, male, "MT: Broadwater Co., SE of Canyon Ferry Res., 7-V-2007" (MGKC)
Figure 20 in A morphological and mtDNA analysis of the badlands tiger beetle, Cicindela (s. str.) decemnotata Say, 1817 (Coleoptera: Carabidae: Cicindelinae) with the description of three new subspecies C. Barry Knisley
Figure 20. Haplotype networks recovered by statistical parsimony at the 5-step level. Empty circles represent intermediate haplotypes that were not present in the sample, and each bar illustrates a single mutational step relating two haplotypes, and changes of ambiguous significance and marked (*). Taxon names are based on identification by origin and morphology. Bars and taxa are color-coded according to match groups of sister species and subspecies of C. decemnotata postulated from morphology.
Figure 9. Cicindela d. montevolans. A in A morphological and mtDNA analysis of the badlands tiger beetle, Cicindela (s. str.) decemnotata Say, 1817 (Coleoptera: Carabidae: Cicindelinae) with the description of three new subspecies C. Barry Knisley
Figure 9. Cicindela d. montevolans. A. Male, "UT: Cache Co, Swan Flat Rd. W of Hwy 89, 19-V-2007" (MGKC). B. Male, "UT: Cache Co, Swan Flat Rd. W of Hwy 89, 19-V-2007" (MGKC). C. Female, "UT: Cache Co, Swan Flat Rd. W of Hwy 89, 19-V-2007" (MGKC). D. Habitat: south side of Hwy 89 west of Swann Flat Rd, Cache Co., UT, May 2007. Scale bar = 5mm for A–C.
Figure 7. Cicindela d. bonnevillensis. A in A morphological and mtDNA analysis of the badlands tiger beetle, Cicindela (s. str.) decemnotata Say, 1817 (Coleoptera: Carabidae: Cicindelinae) with the description of three new subspecies C. Barry Knisley
Figure 7. Cicindela d. bonnevillensis. A. Female, "UT: Tooele County: Dugway Proving Grounds, 10-V-2009" (MGKC). B. Female, "UT: Tooele County: Dugway Proving Grounds, 10-V-2009" (MGKC). C. Male, "UT: Tooele County: Delle, 9-X-2010" (MGKC). Scale bar = 5mm for all.
Figure 5. Cicindela d. meriwetheri adult habitus. A in A morphological and mtDNA analysis of the badlands tiger beetle, Cicindela (s. str.) decemnotata Say, 1817 (Coleoptera: Carabidae: Cicindelinae) with the description of three new subspecies C. Barry Knisley
Figure 5. Cicindela d. meriwetheri adult habitus. A. Female, "WA: Walla Walla Co., Hwy 12 E of Hwy 730, 3-X- 2003" (MGKC). B. Female, "WA: Grant Co., Grand Coulee Airport, 19-III-2010" (MGKC). C. Male, "USA, WA Walla Walla Co., Hy 12-2 mi E Hy 730 (Wallula Jct). 4-X-1991" (DWBC). D. Male, "BC: 5 mi S Penticton, 13-IV-2008" (CBKC). E. Female. "BC: 5 mi S Penticton, 13-IV-2008" (CBKC). F. Male, "BC: 5 mi S Penticton, 13-IV-2008" (CBKC). Scale bar = 5mm for all.
Figure 4. Cicindela d. decemnotata adult habitus. A in A morphological and mtDNA analysis of the badlands tiger beetle, Cicindela (s. str.) decemnotata Say, 1817 (Coleoptera: Carabidae: Cicindelinae) with the description of three new subspecies C. Barry Knisley
Figure 4. Cicindela d. decemnotata adult habitus. A. Female, "UT: Sevier Co., Hwy 50, NW of Salina, 5-V-2011" (MGKC). B. Male, "UT: Sevier Co., Hwy 50, NW of Salina, 5-V-2011" (MGKC). C. Male, "UT: Sevier Co., Hwy 50, NW of Salina, 5-V-2011" (MGKC). D. Habitat: S, Hwy 50, NW of Salina, Sevier Co., UT, 5-V-2011. Scale bar = 5mm for A–C.
Figure 3. Cicindela d. decemnotata adult habitus. A in A morphological and mtDNA analysis of the badlands tiger beetle, Cicindela (s. str.) decemnotata Say, 1817 (Coleoptera: Carabidae: Cicindelinae) with the description of three new subspecies C. Barry Knisley
Figure 3. Cicindela d. decemnotata adult habitus. A. Female, "CO: Grand Co., RT 36 Lake Granby, 27-V-1994" (CSUC). B. Male, "MT: Yellowstone Co., NE of Billings, 28-IV-2008" (MGKC). C. Female, "MT: Jefferson, June 12, 1924" (MTEC). D. Male," Jefferson, Colo, June 20, 1918" (USNM). E. Female, "Idaho Bonneville Co. Willow Creek Ririe Dam, 5 mi SE Ririe 30-V-1975" (BYUC) F. Female, "6 mi SE Malta, IDA Cassia Co. IV-30-71" (UIDC). Scale bar = 5mm for all.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.