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29 results for “multiple breeding”
Hidden causes of variation in offspring reproductive value: negative effects of maternal breeding age on offspring telomere length persist undiminished across multiple generations
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Population Genomics Analysis of 30 Samples from Each of Multiple Populations Reveals Signatures of Selection from Breeding for Rapid Growth and Apical Dominance in Paulownia fortunei
<p><i>Paulownia fortunei</i> is an ecologically and economically valuable tree cultivated for its rapid growth and high-quality timber. To enhance <i>Paulownia</i> germplasm, we have developed the elite variety QingT with patented advantages in growth rate and apical dominance. To illuminate the genetic basis of QingT's superior traits, here we harness comparative population genomics to analyze genomic variation patterns between QingT and common <i>Paulownia</i>. We performed whole-genome re-sequencing of 30 QingT and 30 common samples, detecting 15.6 million SNPs and 2.6 million indels. Phylogeny and population structure analyses robustly partitioned common and QingT into distinct groups which indicate robust genome stabilization. QingT exhibited reduced heterozygosity and linkage disequilibrium decay compared to common <i>Paulownia</i>, reflecting high recombination, indicating hybridizing effects with common white-flowered string is the source of its patented advantages. Genome selection scans uncovered 25 regions of 169 genes with elevated nucleotide diversity, indicating selection sweeps among groups. Functional analysis of sweep genes revealed upregulation of ribosomal, biosynthesis and growth pathways in QingT, implicating enhanced protein production and developmental processes in its rapid growth phenotype. This study's insights comprehensively chart genomic variation during <i>Paulownia</i> breeding, localizing candidate loci governing agronomic traits, and underpinnings of future molecular breeding efforts to boost productivity. </p>
Data from: Forecasting the cumulative effects of multiple stressors on breeding habitat for a steeply declining aerial insectivorous songbird, the olive-sided flycatcher (Contopus cooperi)
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Data from: Multiple benefits drive helping behavior in a cooperatively breeding bird: an integrated analysis
Several hypotheses exist to explain the seemingly altruistic helping behavior of cooperative breeders, although the general utility of these hypotheses remains unclear. While the potential importance of inclusive fitness benefits (kin selection) is traditionally widely appreciated, it is increasingly recognized that direct benefits may be more important than assumed. We use an integrative two-step framework to assess support for current hypotheses in purple-crowned fairy-wrens, a species where subordinates vary in relatedness to breeders and helping increases productivity. After establishing that assumptions of pay-to-stay and social prestige hypotheses (predicting that helping functions as 'paying rent' to stay on the territory or as a signal of individual quality, respectively) were not met, and that parentage by subordinates is extremely rare, we tested whether subordinates adjusted nestling feeding rates following the predictions of the kin selection and group augmentation hypotheses. Benefits of kin selection result from investment in relatives, and group augmentation benefits accrue when subordinates invest more in their own future helpers, for example when they have a better chance of inheriting the breeding position. We found that subordinates fed siblings more than unrelated nestlings, indicating that kin selection could facilitate cooperation. Moreover, the effect of relatedness on feeding effort varied depending on the probability of inheriting a breeding position, suggesting that active group augmentation can explain investment by unrelated subordinates. This statistical interaction would have gone undetected had we not considered both factors simultaneously, illustrating that a focus on single hypotheses could lead to underestimation of their importance in explaining cooperative breeding.
Data from: Reconstruction of paternal genotypes over multiple breeding seasons reveals male green turtles do not breed annually
For species of conservation concern, knowledge of key life-history and demographic components, such as the number and sex ratio of breeding adults, is essential for accurate assessments of population viability. Species with temperature-dependent sex determination can produce heavily biased primary sex ratios, and there is concern that adult sex ratios may be similarly skewed or will become so as a result of climate warming. Prediction and mitigation of such impacts are difficult when life-history information is lacking. In marine turtles, owing to the difficultly in observing males at sea, the breeding interval of males is unknown. It has been suggested that male breeding periodicity may be shorter than that of females, which could help to compensate for generally female-biased sex ratios. Here we outline how the use of molecular-based paternity analysis has allowed us, for the first time, to assess the breeding interval of male marine turtles across multiple breeding seasons. In our study rookery of green turtles (Chelonia mydas), 97% of males were assigned offspring in only one breeding season within the 3-year study period, strongly suggesting that male breeding intervals are frequently longer than 1 year at this site. Our results also reveal a sex ratio of breeding adults of at least 1.3 males to each female. This study illustrates the utility of molecular-based parentage inference using reconstruction of parental genotypes as a method for monitoring the number and sex ratio of breeders in species where direct observations or capture are difficult.
Data from: Same school, different conduct: rates of multiple paternity vary within a mixed-species breeding school of semi-pelagic cichlid fish (Cyprichromis spp.)
Mating system variability is known to exist between and within species, often due to environmental influences. An open question is whether, vice versa, similar environmental conditions entail congruent mating behavior, for example in terms of multiple paternity, in species or populations sharing largely comparable breeding modes. This study employed microsatellite markers to investigate the incidence of multiple paternity in Cyprichromis coloratus and Cyprichromis leptosoma, two sympatric, closely related, mouthbrooding Lake Tanganyika cichlids with similar ecological and behavioral characteristics including the formation of open-water schools. Mouthbrooding females of both species were collected from the same mixed-species breeding school at the same time, minimizing environmental variation during courtship and mating. In C. coloratus, four of 12 broods had more than one sire, with a mean of 1.33 reconstructed sires per brood. C. leptosoma exhibited multiple paternity in 18 of 22 broods, with a mean of 2.59 or 2.86 reconstructed sires per brood according to the programs gerud and colony, respectively. In addition, two broods were found to contain offspring transplanted from another brood. There was no significant difference in brood size between species, but mean sire number did differ significantly. Hence, substantial similarity in reproductive behavior along with shared environmental conditions during courtship and spawning did not lead to equal rates of polyandry or sneaking in the two species.
Data from: Multiple components of environmental change drive populations of breeding waders in seminatural grasslands
Environments are rapidly changing due to climate change, land-use, intensive agriculture and the impact of hunting on predator populations. Here we analysed long-term data recorded during 1928-2014 on the size of breeding populations of waders at two large nature reserves in Denmark, Vejlerne and Tipperne, to determine the effects of components of environmental change on breeding populations of waders. Waders are closely associated with coastal marshes and meadows, and such habitats have been reduced extensively during the last century with negative impacts on population trends of waterbirds. Environmental variables and counts of waders were temporally autocorrelated, and hence we used Generalized Least Square (GLS) by incorporating the first order autoregressive correlation structure in the analyses. We attempted to predict the abundance of waders for short-term trends for two nature reserves (35 years) and for long-term trends for one nature reserve (86 years), using precipitation, temperature, nutrients, abundance of foxes Vulpes vulpes, area grazed and number of cattle all standardized to a mean = 0 and SD = 1). There was evidence of impacts of nutrients, climate (long-term changes in temperature and precipitation), grazing, mowing and predation on bird populations. We used standard random effects meta-analyses weighted by (N – 3) to quantify these mean effects. There was no significant difference in effect size among species, while mean effect size differed consistently among environmental factors, and the interaction between effect size for species and environmental factors was also significant. Thus, environmental factors affected the different species differently. Mean effect size was the largest at +0.20 for rain, +0.11 for temperature, -0.09 for fox abundance and -0.03 for number of cattle, while there was no significant mean effect for fertilizer, area grazed and year. The negative impact of number of cattle on abundance of waders implied that a management tool actually had a significant negative impact on the population. Effect sizes for two short-term time series from Tipperne and Vejlerne were positively correlated as were effect sizes for short-term and long-term time series at Tipperne. This implies that environmental factors had consistent effects across large temporal and spatial scales.
Kin do not always help: testing multiple hypotheses on nest feeding in a cooperatively breeding bird
<p>In cooperatively breeding species, group members may derive multiple benefits from helping to raise other individuals' offspring, yet not all individuals do so. In this study, we tested several hypotheses to explain why group members feed offspring of breeding placid greenbuls (Phyllastrephus placidus). In accordance with the kin selection hypothesis, all helpers were first-order kin of the breeding female and the presence of helpers was associated with increased survival of the breeding pair. However, the propensity to help varied widely among group members, as 46% of group members related to the breeding female did not feed nestlings. Sex, relatedness to the breeding male, and group size did not explain additional variation in helping propensity or effort, however, younger helpers fed offspring more often than older ones. Overall, our results show mixed support for predictions of the group augmentation hypothesis, while predictions of the pay-to-stay hypothesis and skills hypothesis were not supported. We suggest that costs associated with providing food to nestlings, and benefits of other types of helping behavior (e.g. anti-predator behavior), may jointly explain why members of breeding groups often refrain from helping at the nest.</p>
Data from: Multiple components of environmental change drive populations of breeding waders in seminatural grasslands
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Data from: Multiple extreme climatic events strengthen selection for earlier breeding in a wild passerine
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Data from: Using multiple markers to elucidate the ancient, historical, and modern relationships among North American Arctic dog breeds
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Data from: Same school, different conduct: rates of multiple paternity vary within a mixed-species breeding school of semi-pelagic cichlid fish (Cyprichromis spp.)
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Data from: Reconstruction of paternal genotypes over multiple breeding seasons reveals male green turtles do not breed annually
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Data from: Multiple stressors in a top predator seabird: potential ecological consequences of environmental contaminants, population health and breeding conditions
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Data from: Multiple benefits drive helping behavior in a cooperatively breeding bird: an integrated analysis
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Kin do not always help: testing multiple hypotheses on nest feeding in a cooperatively breeding bird
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Data from: Making use of multiple surveys: estimating breeding probability using a multievent-robust design capture-recapture model
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Data from: Avian vulnerability to wind farm collision through the year: insights from lesser black-backed gulls (Larus fuscus) tracked from multiple breeding colonies
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Urbanisation lowers great tit (Parus major) breeding success at multiple spatial scales
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Data from: Introgression of chromosome segments from multiple alien species in wheat breeding lines with wheat streak mosaic virus resistance
Pyramiding of alien-derived Wheat streak mosaic virus (WSMV) resistance and resistance enhancing genes in wheat is a cost-effective and environmentally safe strategy for disease control. PCR-based markers and cytogenetic analysis with genomic in situ hybridisation were applied to identify alien chromatin in four genetically diverse populations of wheat (Triticum aestivum) lines incorporating chromosome segments from Thinopyrum intermedium and Secale cereale (rye). Out of 20 experimental lines, 10 carried Th. intermedium chromatin as T4DL*4Ai#2S translocations, while, unexpectedly, 7 lines were positive for alien chromatin (Th. intermedium or rye) on chromosome 1B. The newly described rye 1RS chromatin, transmitted from early in the pedigree, was associated with enhanced WSMV resistance. Under field conditions, the 1RS chromatin alone showed some resistance, while together with the Th. intermedium 4Ai#2S offered superior resistance to that demonstrated by the known resistant cultivar Mace. Most alien wheat lines carry whole chromosome arms, and it is notable that these lines showed intra-arm recombination within the 1BS arm. The translocation breakpoints between 1BS and alien chromatin fell in three categories: (i) at or near to the centromere, (ii) intercalary between markers UL-Thin5 and Xgwm1130 and (iii) towards the telomere between Xgwm0911 and Xbarc194. Labelled genomic Th. intermedium DNA hybridised to the rye 1RS chromatin under high stringency conditions, indicating the presence of shared tandem repeats among the cereals. The novel small alien fragments may explain the difficulty in developing well-adapted lines carrying Wsm1 despite improved tolerance to the virus. The results will facilitate directed chromosome engineering producing agronomically desirable WSMV-resistant germplasm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.