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17 results for “nanodiamonds”
Characterization of the angular-dependent emission of nitrogen-vacancy centers in nanodiamond
<p>We report on the characterization of the angular-dependent emission of single-photon emitters based on single nitrogen-vacancy (NV-) centers in nanodiamond at room temperature. A theoretical model for the calculation of the angular emission patterns of such an NV-center at a dielectric interface will be presented. For the first time, the orientation of the NV-centers in nanodiamond was determined from back focal plane images of NV-centers and by comparison of the theoretical and experimental angular emission pattern. Furthermore, the orientation of the NV-centers was also obtained from measurements of the fluorescence intensity in dependence on the polarization angle of the linearly polarized excitation laser. The results of these measurements are in good agreement. Moreover, the collection efficiency in this setup was calculated to be higher than 80% using the model of the angular emission of the NV-centers.</p>
A data set on "Utilizing Constant Energy Difference between sp-Peak and C 1s Core Level in Photoelectron Spectra for Unambiguous Identification and Quantification of Diamond Phase in Nanodiamonds"
<p>The data set to paper: </p> <p>Utilizing Constant Energy Difference between sp-Peak and C 1s Core Level in Photoelectron Spectra for Unambiguous Identification and Quantification of Diamond Phase in Nanodiamonds</p> <p>Oleksandr Romanyuk1,*, Štěpán Stehlík1,2, Josef Zemek1, Kateřina Aubrechtová Dragounová1,3 and Alexander Kromka1</p> <p>1 Institute of Physics of the Czech Academy of Sciences, Cukrovarnická 10, 162 00 Prague, Czech Republic<br>2 New Technologies—Research Centre, University of West Bohemia, Univerzitní 8, 306 14 Pilsen, Czech Republic<br>3 Faculty of Nuclear Sciences and Physical Engineering, Czech Technical University in Prague, Břehová 7, 115 19 Prague, Czech Republic</p> <p>* corresponding author: romanyuk@fzu.cz</p> <p>Data manager: Kristýna Dostálová: dostalovak@fzu.cz</p> <p>Date of data collection: 1. 1. 2024 - 15. 03. 2024</p> <p>All the data showed in the pictures are provided in X-Y format with described sample. Always, the respective Figure to which the data belong is provided in high resolution. <br>The data are in the following formats: <br>Figure 1: tiff, csv<br>Figure 2: tiff, csv<br>Figure 3: tiff, csv<br>Figure 4: tiff, csv<br>Figure 5: tiff, csv</p> <p>Data acquistion and processing is provided in the Experimental part in the publication: DOI:10.3390/nano14070590</p>
Datasets for "Quantifying nanodiamonds biodistribution in whole cells with correlative iono-nanoscopy"
<p><strong>Readme:</strong></p> <p>These are datasets that were generated during experiments, simulations, and data processing.</p> <p><strong>[1]</strong> Data saved in .xlsx files are data points for plots and can be opened with Microsoft Excel.</p> <p><strong>[2]</strong> Data saved in .txt files are image files recorded in 1024 x 1024 pixel arrays. A custom software IonDAQ-lite (ref: Bettiol, A. A. et al. Nucl. Instrum. Methods Phys. Res. B 267, 2069-2072, 2009) was used to open and process these image files, however some commonly used image processing programs (e.g. Matlab) can also be used to open these files.</p> <p><strong>[3]</strong> The .lsm and .czi files are 2D or 3D confocal image files and can be viewed with ZEN 3.4 (ZEN lite, Carl Zeiss).</p> <p> </p>
Data for "Temperature dependence of charge conversion during NV-center relaxometry in nanodiamond"
<p>In this Zenodo repository, the data as plotted in "Temperature dependence of charge conversion during NV-center relaxometry in nanodiamond" is uploaded. The file consists of folders named after the figures in the manuscript, where each folder contains csv files and a readme file in which additional information can be found. If a fit function is plotted in a figure, the fit data is also given in a csv file.</p>
A data set on_Electrical and colloidal properties of hydrogenated nanodiamonds: effects of structure, composition and size
<p>The data set to paper: </p> <p>Electrical and colloidal properties of hydrogenated nanodiamonds: effects of structure, composition and size</p> <p>Stepan Stehlik1,2*, Ondrej Szabo2, Ekaterina Shagieva2, Daria Miliaieva2, Alexander Kromka2, Zuzana Nemeckova3, Jiri Henych3, 4, Jan Kozempel5, Evgeny Ekimov6, Bohuslav Rezek7</p> <p>1 New Technologies – Research Centre, University of West Bohemia, Univerzitní 8, 306 14, Pilsen, Czechia<br>2 Institute of Physics of the Czech Academy of Sciences, Cukrovarnická 10, 162 00 Prague 6, Czechia<br>3 Institute of Inorganic Chemistry of the Czech Academy of Sciences, 250 68 Husinec-Řež, Czechia<br>4 Faculty of Environment, Jan Evangelista Purkyně University in Ústí nad Labem, Pasteurova 3632/15, 400 96 Ústí nad Labem, Czechia<br>5 Department of Nuclear Chemistry, Faculty of Nuclear Sciences and Physical Engineering, Czech Technical University in Prague, Břehová 7, Prague 1, 115 19, Czechia<br>6 Vereshchagin Institute for High Pressure Physics, Russian Academy of Sciences, Moscow 108840, Russia<br>7 Faculty of Electrical Engineering, Czech Technical University in Prague, Technická 2, 166 27 Prague, Czechia</p> <p>*principal investigator: stehlik@fzu.cz</p> <p>Data manager: Jan Jaroš: Jan.Jaros2@vut.cz</p> <p>Date of data collection: 1. 6. 2020 - 18. 1. 2024</p> <p>All the data showed in the pictures are provided in X-Y format with described sample. Always, the respective Figure to which the data belong is provided in high resolution. <br>The data are in the following formats: <br>Figure 1: tiff, csv<br>Figure 2: tiff, csv<br>Figure 3: tiff, csv<br>Figure 4: tiff, csv<br>Figure 5: tiff, csv<br>Figure 6: tiff</p> <p>Data acquistion methods and conditions and data processing is provided in the Experimental part in the publication: DOI:10.1016/j.cartre.2024.100327</p> <p> </p> <p><span> </span></p>
Replication data for Optical properties of SiV and GeV color centers in nanodiamonds under hydrostatic pressures up to 180 GPa
<p>We investigate the optical properties of silicon-vacancy (SiV) and germanium-vacancy (GeV) color centers in nanodiamonds under hydrostatic pressure up to 180 GPa. The nanodiamonds were synthetized by Si or Ge-doped plasma assisted chemical vapor deposition and, for our experiment, pressurized in a diamond anvil cell.</p> <p>Data_SiV : replication data for the center wavelength of the photoluminescence of the SiV center as a function of pressure. The file is composed of 4 columns: first is pressure (in GPa), second is error in pressure (in GPa), third is center wavelength (in nm) and fourth is error in center wavelength (in nm).</p> <p>Data_GeV : replication data for the center wavelength of the photoluminescence of the GeV center as a function of pressure. The file is composed of 4 columns: first is pressure (in GPa), second is error in pressure (in GPa), third is center wavelength (in nm) and fourth is error in center wavelength (in nm).</p>
A data set on "High-Yield Production of SiV-Doped Nanodiamonds for Spectroscopy and Sensing Applications"
<p>The data set to paper: </p> <p>High-Yield Production of SiV-Doped Nanodiamonds for Spectroscopy and Sensing Applications</p> <p>Alexander Kromka1,*, Marián Varga1,2, Kateřina Aubrechtová Dragounová1,3, Oleg Babčenko1, René. Pfeifer1, Assegid M. Flatae4, Florian Sledz4, Farzana Akther4, Mario Agio4,5, Štěpán Potocký1, Štěpán Stehlík1</p> <p>1 Institute of Physics, Czech Academy of Sciences, Prague 6, Czech Republic<br>2 Institute of Electrical Engineering, Slovak Academy of Sciences, Bratislava, Slovakia<br>3 Faculty of Nuclear Sciences and Physical Engineering, Czech Technical University in Prague, Prague 1, Czech Republic<br>4 Laboratory of Nano-Optics and Cμ, University of Siegen, Walter-Flex-Str. 3, 57072 Siegen, Germany <br>5 National Institute of Optics (INO-CNR), Largo Enrico Fermi 6, 50125 Florence, Italy</p> <p>*corresponding authors: kromka@fzu.cz</p> <p>Data manager: Kristýna Dostálová: dostalovak@fzu.cz</p> <p>Date of data collection: 1. 2. 2023 - 31. 7. 2024</p> <p>All the data showed in the pictures are provided in X-Y format with described sample. Always, the respective figure to which the data belong is provided in high resolution. <br>The data are in the following formats: <br>Scheme 1: pdf<br>Figure 1: pdf<br>Figure 2: pdf<br>Figure 3: pdf, csv<br>Figure 4: pdf, csv<br>Figure 5: pdf, csv<br>Figure 6: pdf, csv<br>Figure 7: pdf, csv<br>Figure S1: pdf, csv<br>Figure S2: pdf, csv</p> <p>The comma separated values file (csv) always contain the description of the columns in the first row. In case of composed image the name of the file corresponds to the corresponding figure.</p> <p>Data acquistion and processing is provided in the Experimental part in the publication: DOI: 10.1021/acsanm.4c04676</p>
Nanodiamond Modified Gutta Percha (NDGP) Composite for Non-surgical Root Canal Therapy (RCT) Filler Material
ClinicalTrials.gov study NCT02698163. IPD Sharing: NO. Countries: 1. Publications: 1.
Surface Optimization of Nanodiamonds Using Non-Thermal Plasma
Open the record for dataset details and reuse information.
Nanodiamond-Gutta Percha Composite Biomaterials for Root Canal Therapy
ClinicalTrials.gov study NCT03376984. IPD Sharing: NO. Countries: 1. Publications: 2.
Cell Volume (3D) Correlative Microscopy Facilitated by Intra-Cellular Fluorescent Nanodiamonds as Multi-Modal Probes
<p>RAW files</p>
Molecular Dynamics Study of the Vibrational Energy Exchange Between Nanodiamond and N-butylpyridinium Tetrafluoroborate Ionic Liquid
<p>Nanofluids are composed of certain nanoscale object immersed in the molecular or ionic liquid. Nanofluids generally exhibit higher thermal conductivities, as compared to conventional fluids. Therefore, they are interesting to applications, in which thermal conductivity is a cornerstone. Hereby, molecular dynamics simulations were used to study an energy exchange in one of the possible nanofluids: N-butylpyridinium tetrafluoroborate based solution of nanodiamonds. The data are given in the form of energy components versus time and atomistic trajectories versus time at a number of temperatures. The simulations were conducted in the constant energy ensemble to avoid efects of temperature coupling and pressure coupling. The dataset possesses both research and educational values.</p>
Dataset for the article "Structural and Functional Insights into Oxidized and Hydrogenated HPHT Nanodiamonds for Cortisol Immunosensor Applications".
<p>Dataset for the article "Structural and Functional Insights into Oxidized and Hydrogenated HPHT Nanodiamonds for Cortisol Immunosensor Applications</p> <p>Chakavak Esmaeili1, Štěpán Stehlík2, Martin Krejci3, Bohuslav Rezek1</p> <p>1 Faculty of Electrical Engineering, CTU in Prague, Technicka 2, 16627 Prague, Czech Republic</p> <p>2 Institute of Physics of the Czech Academy of Sciences, Cukrovarnická 10, 162 00 Prague, Czech Republic</p> <p>3 FHNW University of Applied Sciences and Arts Northwestern Switzerland School of Engineering Klosterzelgstrasse 2<br>CH-5210 Windisch</p> <p> </p> <p>Fig 1A. SEM images of (a) the carbon bare electrode (b) before and (c) after rinsing of 3 µg HPHT-O<br>Fig 1B. SEM image of (a) the carbon bare electrode (b) before and (c) after rinsing of 3 µg HPHT-H<br>Fig 1C. SEM micrographs of (a) bare carbon electrode, (b) SPE/HPHT-O, (c) SPE/HPHT-O/APTES, (d) SPE/HPHT-O/APTES/EDC NHS, (e) SPE/HPHT-O/APTES/EDC NHS/Ab, (f) SPE/HPHT-O/APTES/EDC NHS/Ab/BSA, (g) SPE/HPHT-O/APTES/EDC NHS/Ab/BSA/Ag (with original magnification 2.00KX (up) and 15.00KX (down) at 5 kV)<br>Fig 2. The preparation and immobilization step of the cortisol fabrication based on electrochemical immunosensor <br>Fig 3. Functionalization step. a) CV and b) DPV results of (1) carbon bare electrode, (2) electrode/HPHT-O, (3) electrode/HPHT-O/APTES, (4) electrode/HPHT-O/APTES/EDC NHS, at pH 7.0, containing 250 mM KCl and 5 mM K3[Fe(CN)6] and 5 mM K4[Fe(CN)6], Scan rate 0.1Vs−1<br>Fig 4. Sensing steps. a) CV and b) DPV results for (4) electrode/HPHT-O/APTES/EDC NHS, (5) electrode/HPHT-O/APTES/EDC NHS/Ab, (6) electrode/HPHT-O/APTES/EDC NHS/Ab/BSA, and (7) electrode/HPHT-O/APTES/EDC NHS/Ab/BSA/Ag in the presence of 1 ng/mL cortisol at pH 7.0, in a solution containing 250 mM KCl, 5 mM K₃[Fe(CN)₆], and 5 mM K₄[Fe(CN)₆], with a scan rate of 0.1 V/s<br>Fig 5. a) CV and b) DPV results for (1) carbon bare electrode, (2) electrode/HPHT-O, (3) electrode/HPHT-O/APTES, (4) electrode/HPHT-O/APTES/Ab, (5) electrode/HPHT-O/APTES/Ab/BSA, and (6) electrode/HPHT-O/APTES /Ab/BSA/Ag in the presence of 1 ng/mL cortisol at pH 7.0, in a solution containing 250 mM KCl, 5 mM K₃[Fe(CN)₆], and 5 mM K₄[Fe(CN)₆], with a scan rate of 0.1 V/s<br>Fig 6. a) CV and b) DPV results for (1) carbon bare electrode, (2) electrode/HPHT-O, (3) electrode/HPHT-O/EDC NHS, (4) electrode/HPHT-O/ EDC NHS /Ab, (5) electrode/HPHT-O/ EDC NHS /Ab/BSA, and (6) electrode/HPHT-O/ EDC NHS /Ab/BSA/Ag in the presence of 1 ng/mL cortisol at pH 7.0, in a solution containing 250 mM KCl, 5 mM K₃[Fe(CN)₆], and 5 mM K₄[Fe(CN)₆], with a scan rate of 0.1 V/s<br>Fig 7. a) CV and b) DPV results of (1) carbon bare electrode, (2) electrode/HPHT-H, (3) electrode/HPHT-H/APTES, (4) electrode/HPHT-H/APTES/EDC NHS, (5) electrode/HPHT-H/APTES/EDC NHS/Ab, (6) electrode/HPHT-H/APTES/EDC NHS/Ab/BSA, and (7) electrode/HPHT-H/APTES/EDC NHS/Ab/BSA/Ag in the presence of 1 ng/mL cortisol at pH 7.0, in a solution containing 250 mM KCl, 5 mM K₃[Fe(CN)₆], and 5 mM K₄[Fe(CN)₆], with a scan rate of 0.1 V/s<br>Fig 8. Variation of the immunosensor response against the cortisol concentrations in the range of 1.0 ng to 0.5 ng/mL at pH 7.0, in a solution containing 250 mM KCl, 5 mM K₃[Fe(CN)₆], and 5 mM K₄[Fe(CN)₆], with a scan rate of 0.1 V/s<br>Fig 9. Interference study involving progesterone (2430 pg/ml), β-oestradiol (32 pg/ml), cortisone (28.6 nM), and corticosterone (3.94 nM) with respect to cortisol (1 ng/mL)</p> <p><br>Fig S1. Optical images obtained for (a) before and (b) after rinsing of 3.0µg HPHT-H<br>Fig S2. Optical images obtained for (a) bare carbon electrode, (b) HPHT-O, (c) HPHT-O/APTES, (d) HPHT-O/APTES/EDC NHS, (e) HPHT-O/APTES/EDC NHS /Ab, (f) HPHT-O/APTES/EDC NHS /Ab/BSA, (g) HPHT-O/APTES/EDC NHS /Ab/BSA/Ag<br>Fig S3. a) CV and b) DPV results of (1) carbon bare electrode, (2) electrode/HPHT-H, (3) electrode/HPHT-H/APTES, (4) electrode/HPHT-H/APTES/Ab, (5) electrode/HPHT-H/APTES/ Ab/BSA, and (6) electrode/HPHT-H/APTES/Ab/BSA/Ag in the presence of 1 ng/mL cortisol at pH 7.0, in a solution containing 250 mM KCl, 5 mM K₃[Fe(CN)₆], and 5 mM K₄[Fe(CN)₆], with a scan rate of 0.1 V/S<br>Fig S4. a) CV and b) DPV results of (1) carbon bare electrode, (2) electrode/HPHT-H, (3) electrode/HPHT-H/EDC NHS, (4) electrode/HPHT-H/EDC NHS/Ab, (5) electrode/HPHT-H/EDC NHS/ Ab/BSA, and (6) electrode/HPHT-H/EDC NHS/Ab/BSA/Ag in the presence of 1 ng/mL cortisol at pH 7.0, in a solution containing 250 mM KCl, 5 mM K₃[Fe(CN)₆], and 5 mM K₄[Fe(CN)₆], with a scan rate of 0.1 V/S<br>Fig S5. a) CV and b) DPV results of (1) carbon bare electrode, (2) electrode/APTES, (3) electrode/APTES/EDC NHS, (4) electrode/APTES/EDC NHS/Ab, (5) electrode/APTES/EDC NHS/Ab /BSA, and (6) electrode/APTES/EDC NHS/Ab/Ag in the presence of 1 ng/mL cortisol at pH 7.0, in a solution containing 250 mM KCl, 5 mM K₃[Fe(CN)₆], and 5 mM K₄[Fe(CN)₆], with a scan rate of 0.1 V/S</p> <p> </p> <p><br>Table 1. Summary of the DPV electrochemical performance of the HPHT-O modified electrode using APTES and EDC-NHS as crosslinkers in cortisol immunosensor detection<br>Table 2. Summary of the DPV electrochemical performance of the HPHT-O modified electrode utilizing APTES without EDC-NHS as a crosslinker in cortisol immunosensor detection.<br>Table 3. Summary of the DPV electrochemical performance of the HPHT-O modified electrode utilizing EDC-NHS without APTES as a crosslinker in cortisol immunosensor detection<br>Table 4. Determination of cortisol in artificial human saliva.</p>
Supplementary information: Cell volume (3D) correlative microscopy facilitated by intracellular fluorescent nanodiamonds as multi-modal probes
<p><em>Supplementary video files for manuscript</em>:</p> <p><strong>Cell volume (3D) correlative microscopy facilitated by intracellular fluorescent nanodiamonds as multi-modal probes</strong></p> <p>Neeraj Prabhakar<sup>1,2*</sup>, Ilya Belevich<sup>3</sup>, Markus Peurla<sup>4,5,6</sup>, Xavier Heiligenstein<sup>7</sup>, Huan-Cheng Chang<sup>8</sup>, Cecilia Sahlgren<sup>2</sup>, Eija Jokitalo<sup>3</sup> and Jessica M. Rosenholm<sup>1</sup></p> <ol> <li>Pharmaceutical Sciences Laboratory, Faculty of Science and Engineering, Åbo Akademi University, Turku, 20520, Finland.</li> <li>Cell Biology, Faculty of Science and Engineering, Åbo Akademi University, Turku, 20520 Finland.</li> <li>Electron Microscopy Unit, Helsinki Institute of Life Science - Institute of Biotechnology, University of Helsinki, Helsinki, FI-00014, Finland</li> <li>Institute of Biomedicine, Faculty of Medicine, University of Turku, Turku, 20520, Finland.</li> <li>Cancer Research Laboratory FICAN West, Institute of Biomedicine, University of Turku, 20520 Turku, Finland</li> <li>Turku Bioscience Centre, University of Turku and Åbo Akademi University, 20520 Turku, Finland</li> <li>CryoCapCell, 155 Boulevard de l’Hopital, 75013 Paris, France.</li> <li>Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei, 10617, Taiwan.</li> </ol>
Raw data regarding research on functionalized nanodiamonds
<p>Spectroscopic and imaging raw data desribed in scientific article. </p>
Dataset for the article "Electron-Transfer-Mediated by Detonation Nanodiamonds for Enhanced Cortisol Immunoassay"
<p>Dataset for the article "Electron-Transfer-Mediated by Detonation Nanodiamonds for Enhanced Cortisol Immunoassay".</p> <p>Chakavak Esmaeili1*, Jaroslav Kuliček1, Markéta Šlapal Bařinková1, Bohuslav Rezek1*</p> <p>1 Faculty of Electrical Engineering, CTU in Prague, Technicka 2, 16627 Prague, Czech Republic</p> <p>Figure 1. The preparation and immobilization step of the cortisol fabrication based on electrochemical immunosensor <br>Figure 2. 3D AFM images of (1) carbon bare electrode, (2) carbon electrode /DND, (3) carbon electrode/DND/EDC NHS (4) carbon electrode/ DND /EDC NHS/Ab, (5) carbon electrode/ DND /EDC NHS/Ab /BSA, (6) carbon electrode/ DND /EDC NHS/Ab/BSA/Ag<br>Figure 3. Raman spectra of immunosensor composition<br>Figure 4. FTIR spectra of DND (gray line), DND/ EDC NHS (blue line), DND/EDC NHS/Ab (green line). All spectra were recorded in the region between 4000–800 cm−1 with a resolution of 4 cm− 1 and 128 scans<br>Figure 5. Functionalization step. (1) carbon bare electrode, (2) carbon electrode /DND, (3) carbon electrode /DND/EDC NHS, (4) carbon electrode/DND/ EDC NHS/Ab and sensing step (5) carbon electrode/DND/ EDC NHS/Ab/BSA and (6) carbon electrode/DND/ EDC NHS/Ab/BSA/Ag in the presence of 100 nM cortisol in pH 7.0, containing 250 mM KCl and 5 mM K3[Fe(CN)6] and 5 mM K4[Fe(CN)6], Scan rate 0.1Vs−1<br>Figure 6. (a) Calibration curve of DPV with varying Ag concentrations. (b) Sensitivity comparison between configurations without Ab receptor (carbon electrode/DND/EDC NHS/Ag) and with Ab receptor (carbon electrode/DND/EDC NHS/Ab/BSA/Ag) in PBS solution, pH 7.0, containing 250 mM KCl and 5 mM K3[Fe (CN)6] and 5 mM K4[Fe (CN)6]<br>Figure 7. Interference study involving progesterone (2430 pg/ml), β-oestradiol (32 pg/ml), cortisone (28.6 nM), and corticosterone (3.94 nM) with respect to cortisol (100nM)<br>Figure 8. Stability of the immunosensor with repeated measurements of cortisol</p> <p> </p> <p>Figure S1. Optical images obtained for (1) bare carbon electrode, (2) DND, (3) DND/EDC NHS, (4) DND/EDC NHS/Ab, (5) DND/EDC NHS/Ab/BSA, (6) DND/EDC NHS/Ab/BSA/Ag.<br>Figure S2. SEM images of (1) bare carbon SPE, (2) carbon electrode/ DND, (3) carbon electrode/ DND /EDC NHS, (4) carbon electrode/ DND /EDC NHS/Ab, (5) carbon electrode/DND/EDC NHS/Ab/BSA, (6) carbon electrode/ DND /EDC NHS/Ab/BSA/Ag<br>Figure S3. (a) CV and (b) DPV of carbon bare electrode, carbon electrode /EDC NHS, carbon electrode/EDC NHS/Ab, carbon electrode/EDC NHS/Ab/BSA, carbon electrode/EDC NHS/Ab/BSA/Ag, in the presence of 100 nM cortisol, pH 7.0, containing 250 mM KCl and 5 mM K3[Fe(CN)6] and 5 mM K4[Fe(CN)6], Scan rate 0.1Vs−1.</p> <p><br>Table 1. Determination of cortisol in artificial saliva sample (n = 3)<br>Table S1. Surface roughness of immunosensors</p>
Nanodiamonds
<p>Nanodiamonds Argonne</p>
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