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460 results for “near infrared”

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zenodo48/100

DATA SET: Performance Assessment of a Commercial Continuous-Wave Near-Infrared Spectroscopy Tissue Oximeter for Suitability for Use in an International, Multi-Center Clinical Trial

<p>This repository contains the data sets related to the publication:</p> <p>Cortese, L.; Zanoletti, M.; Karadeniz, U.; Pagliazzi, M.; Yaqub, M.A.; Busch, D.R.; Mesquida, J.; Durduran, T. Performance Assessment of a Commercial Continuous-Wave Near-Infrared Spectroscopy Tissue Oximeter for Suitability for Use in an International, Multi-Center Clinical Trial.&nbsp;<em>Sensors</em>&nbsp;<strong>2021</strong>,&nbsp;<em>21</em>, 6957. https://doi.org/10.3390/s21216957</p>

opencc-by-4.0Nov 2021View details →
zenodo48/100

Soil visible–near infrared (vis–NIR) spectra for the Biomes of Australian Soil Environments (BASE) soil microbial diversity database

<p>Visible&ndash;near infrared spectra of 695 soil samples collected in the Biomes of Australian Soil Environments (BASE) soil microbial diversity project (Bissett et al., 2016). The spectra represent reflectance values from 2151 wavelengths that range from 350 nm to 2500 nm with a 1 nm interval. The dataset has unique sample identification numbers and the date of sampling, which can be related to the BASE (Australian Microbiome) database (https://data.bioplatforms.com/organization/australian-microbiome)</p>

opencc-by-4.0Feb 2022View details →
zenodo48/100

Near infrared imaging data from brown rot decayed wood

<p>This dataset contains near infrared imaging data from the following publication: Belt, T.; Awais, M.; M&auml;kel&auml;, M. (2022) Chemical characterization and visualization of progressive brown rot decay of wood by near infrared imaging and multivariate analysis. Frontiers in Plant Science 13:940745. DOI: 10.3389/fpls.2022.940745. Details on the samples, the decay test, and the image collection parameters can be found in the publication.</p> <p>The &ldquo;Sample IDs and mass losses.cvs&rdquo; file contains the sample ID and mass loss due to decay of each sample in the dataset. The &ldquo;C puteana.mat&rdquo; and &ldquo;R. placenta.mat&rdquo; files contain the near infrared imaging data of samples exposed to the fungus <em>Coniophora puteana</em> and the fungus <em>Rhodonia placent</em>a, respectively, organised into cell arrays of sample IDs and corresponding image files. To generate the image files, a region of interest of 551 x 384 pixels was selected from the raw image files to produce an image that contains the sample surrounded by background. The spectral data were then converted to reflectance and corrected using the calibration reflectance target values.</p>

opencc-by-4.0Jul 2022View details →
zenodo48/100

Near-infrared (NIR) soil spectral library using the NeoSpectra Handheld NIR Analyzer by Si-Ware

<p>Up-to-date information on soil properties and the ability to track changes in soil properties over time are critical for improving multiple decisions on soil security at various scales, ranging from global climate change modeling and policy to national level environmental and development planning, to farm and field level resource management. Diffuse reflectance infrared spectroscopy has become an indispensable laboratory tool for the rapid estimation of numerous soil properties to support various soil mapping, soil monitoring, and soil testing applications. Recent advances in hardware technology have enabled the development of handheld sensors with similar performance specifications as laboratory-grade near-infrared (NIR) spectrometers.</p> <p>Here, we've compiled a hand-held NIR spectral library (1350-2550 nm) using the NeoSpectra Handheld NIR Analyzer developed by <a href="https://www.si-ware.com/">Si-Ware</a>. Each scanner is fitted with Fourier-Transform technology based on the semiconductor Micro Electromechanical Systems (MEMS) manufacturing technique, promising accuracy, and consistency between devices.</p> <p>This library includes 2,106 distinct mineral soil samples scanned across 9 of these portable low-cost NIR spectrometers (indicated by serial no). 2,016 of these soil samples were selected to represent the diversity of mineral soils found in the United States, and 90 samples were selected across Ghana, Kenya, and Nigeria. 519 of the US samples were selected and scanned by <a href="https://www.woodwellclimate.org/">Woodwell Climate Research Center</a>. These samples were queried from the <a href="https://ncsslabdatamart.sc.egov.usda.gov/">USDA NRCS NSSC-KSSL Soil Archives</a> as having a complete set of eight measured properties (TC, OC, TN, CEC, pH, clay, sand, and silt). They were stratified based on the major horizon and taxonomic order, omitting the categories with less than 500 samples. Three percent of each stratum (i.e., a combination of major horizon and taxonomic order) was then randomly selected as the final subset retrieved from KSSL's physical soil archive as 2-mm sieved samples. The remaining 1,604 US samples were queried from the USDA NRCS NSSC-KSSL Soil Archives by the <a href="https://www.unl.edu/">University of Nebraska - Lincoln</a> to meet the following criteria: Lower depth &lt;= 30 cm, pH range 4.0 to 9.5, Organic carbon &lt;10%, Greater than lower detection limits, Actual physical samples available in the archive, Samples collected and analyzed from 2001 onwards, Samples having complete analyses for high-priority properties (Sand, Silt, Clay, CEC, Exchangeable Ca, Exchangeable Mg, Exchangeable K, Exchangeable Na, CaCO3, OC, TN), &amp; MIR scanned.</p> <p>All samples were scanned dry 2mm sieved. ~20g of sample was added to a plastic weighing boat where the NeoSpectra scanner would be placed down to make direct contact with the soil surface. The scanner was gently moved across the surface of the sample as 6 replicate scans were taken. These replicates were then averaged so that there is one spectra per sample per scanner in the resulting database.</p> <p>A subset of 1,976 US topsoil samples was used to create Cubist models for 8 soil properties including bulk density (BD, &lt;2mm fraction, 1/3 Bar, units in grams per cubic centimeter), calcium carbonate (CaCO3, &lt;2mm fraction, units in weight percent), clay content (percent), buffered ammonium-acetate exchangeable potassium (Ex. K, units in centimoles of charge per kilogram of soil), pH, sand content (percent), silt content (percent), and estimated organic carbon (SOC, estimated after inorganic carbon removal, units in weight percent). Two strategies were evaluated for handling scanner-to-scanner variability: averaging scans per sample (avg) versus retaining replicate scans across all scanners (reps) during model building. Cubist avg models and cubist reps models are provided here for the 8 soil properties outlined in &ldquo;.qs&rdquo; file format and can be opened and worked with in the R programming language. The subset of 1,976 samples has also been provided here for reproducibility (1976_NSlibrary_withmetadata.csv).</p> <p>The&nbsp;repository contains:</p> <ul> <li><em>Neospectra_database_column_names.csv</em>: describes the variables (columns) of site and soil data, and the range of near-infrared (NIR, 1350-2550 nm) and mid-infrared (MIR, 600-4000 cm-1) spectra. The CSV is composed of the file name, column name, type, example, and description with measurement unit.</li> <li><em>Neospectra_WoodwellKSSL_MIR.csv</em>: the equivalent MIR spectra of neospectra samples fetched from the KSSL database and formatted to the OSSL specifications.</li> <li><em>Neospectra_WoodwellKSSL_soil+site+NIR.csv</em>:&nbsp;soil, site, and Neospectra's NIR. Each row&nbsp;contains one&nbsp;replicated spectra of a given scanner (6 repeats per scanner per soil sample). Soil and site info is filled within the same soil sample.</li> <li>1976_NSlibrary_withmetadata.csv: data matrix for reproducible model calibration.</li> <li>Models: <ul> <li>log..bd_model_nir.neospectra_cubist_AVG_ossl_na_v1.2.qs: Cubist average NIR model for log(1+BD).</li> <li> <p>log..caco3_model_nir.neospectra_cubist_AVG_ossl_na_v1.2.qs: Cubist average NIR model for log(1+CaCO3).</p> </li> <li> <p>clay_model_nir.neospectra_cubist_AVG_ossl_na_v1.2.qs: Cubist average NIR model for clay.</p> </li> <li> <p>log..k.ex_model_nir.neospectra_cubist_AVG_ossl_na_v1.2.qs: Cubist average NIR model for log(1+Ex. K).</p> </li> <li> <p>ph.h2o_model_nir.neospectra_cubist_AVG_ossl_na_v1.2.qs: Cubist average NIR model for pH.</p> </li> <li> <p>sand_model_nir.neospectra_cubist_AVG_ossl_na_v1.2.qs: Cubist average NIR model for sand.</p> </li> <li> <p>silt_model_nir.neospectra_cubist_AVG_ossl_na_v1.2.qs: Cubist average NIR model for silt.</p> </li> <li> <p>log..soc_model_nir.neospectra_cubist_AVG_ossl_na_v1.2.qs: Cubist average NIR model for log(1+SOC).</p> </li> <li> <p>log..bd_model_nir.neospectra_cubist_REPS_ossl_na_v1.2.qs: &nbsp;Cubist replicates NIR model for log(1+BD).</p> </li> <li> <p>log..caco3_model_nir.neospectra_cubist_REPS_ossl_na_v1.2.qs: Cubist replicates NIR model for log(1+CaCO3).</p> </li> <li> <p>clay_model_nir.neospectra_cubist_REPS_ossl_na_v1.2.qs: Cubist replicates NIR model for clay.</p> </li> <li> <p>log..k.ex_model_nir.neospectra_cubist_REPS_ossl_na_v1.2.qs: Cubist replicates NIR model for log(1+Ex. K).</p> </li> <li> <p>ph.h2o_model_nir.neospectra_cubist_REPS_ossl_na_v1.2.qs: Cubist replicates NIR model for pH.</p> </li> <li> <p>sand_model_nir.neospectra_cubist_REPS_ossl_na_v1.2.qs: Cubist replicates NIR model for sand.</p> </li> <li> <p>silt_model_nir.neospectra_cubist_REPS_ossl_na_v1.2.qs: Cubist replicates NIR model for silt.</p> </li> <li> <p>log..soc_model_nir.neospectra_cubist_REPS_ossl_na_v1.2.qs: Cubist replicates NIR model for log(1+SOC).</p> </li> </ul> </li> </ul>

opencc-by-4.0Jan 2023View details →
zenodo44/100

RCSED - A Value-Added Reference Catalog of Spectral Energy Distributions of 800,299 Galaxies in 11 Ultraviolet, Optical, and Near-Infrared Bands: Morphologies, Colors, Ionized Gas and Stellar Populations Properties

<p>We present RCSED, the value-added Reference Catalog of Spectral Energy Distributions of galaxies, which contains homogenized spectrophotometric data for 800,299 low&nbsp;and intermediate redshift galaxies (0.007 &lt; z &lt; 0.6) selected from the Sloan Digital Sky Survey spectroscopic sample. Accessible from the Virtual Observatory (VO) and complemented with detailed information on galaxy properties obtained with the state-of-the-art data analysis, RCSED enables direct studies of galaxy formation and evolution during the last 5 Gyr. We provide tabulated color transformations for galaxies of different morphologies and luminosities and analytic expressions for the red sequence shape in different colors. RCSED comprises integrated k-corrected photometry in up-to 11 ultraviolet, optical, and near-infrared bands published by the GALEX, SDSS, and UKIDSS wide-field imaging surveys; results of the stellar population fitting of SDSS spectra including best-fitting templates, velocity dispersions, parameterized star formation histories, and stellar metallicities computed for instantaneous starburst and exponentially declining star formation models; parametric and non-parametric emission line fluxes and profiles; and gas phase metallicities. We link RCSED to the Galaxy Zoo morphological classification and galaxy bulge+disk decomposition results by Simard et al. We construct the color-magnitude, Faber-Jackson, mass-metallicity relations, compare them with the literature and discuss systematic errors of galaxy properties presented in our catalog. RCSED is accessible from the project web-site and via VO simple spectrum access and table access services using VO compliant applications. We describe several SQL query examples against the database. Finally, we briefly discuss existing and future scientific applications of RCSED and prospectives for the catalog extension to higher redshifts and different wavelengths.</p>

opencc-by-4.0Dec 2016View details →
zenodo44/100

Dose and administration time of indocyanine green in near-infrared fluorescence cholangiography during laparoscopic cholecystectomy (DOTIG) Dataset.

<p><strong><span>Introduction </span></strong></p> <p><span>Different techniques have been described to reduce the incidence of the intraoperative bile duct injury during laparoscopic cholecystectomy (LC), and Near-Infrared Fluorescence Cholangiography (NIFC) with Indocyanine Green (ICG) is one of the latest additions. Currently, there are great disparities in the usage or administration protocols of ICG.</span></p> <p><strong><span>Methods</span></strong></p> <p><span>The aim of this randomised multicenter clinical trial (RCT) is to analyse whether there are differences between the dose and administration ICG intervals to obtain good-quality NIFC during LC. In addition, different factors were analysed that may have an influence on the results of this technique. </span><span>This trial was approved by the local institutional Ethics Committee</span><span>.</span></p> <p><strong><span>Results </span></strong></p> <p><span>From June 2022 to June 2023, 200 patients were randomised in the four arms (G1: </span><span>2.5 mg ICG &gt;3 hours prior to surgery, G2: 2.5 mg ICG 15-30 minutes prior to surgery, G3: 0.05 mg/kg ICG &gt;3 hours prior to surgery and G4: 0.05 mg/kg ICG 15-30 minutes prior to surgery)</span><span>. We found differences in the DISTURBED score between the groups (<em>p</em>&lt;0.001), suggesting that ICG administration 15-30 minutes before surgery was worse than administration &gt;3 hours after LC (<em>p</em>=0.02). We also observed that body mass index, gender, ASA Classification System, previous liver and biliary disease and the type of surgery had influence on NIFC. Finally, the NIFC had impact in intraoperative and postoperative complications, operative time and hospital length of stay. </span></p> <p><strong><span>Conclusion </span></strong></p> <p><span>The time of ICG administration was related to NIFC results, as well as different preoperative predictors. NIFC may also influence in surgical outcomes of LC.</span></p> <p><strong><span>Documentation in ZENODO</span></strong></p> <p>Files stored in this repository correspond to the data extracted from the CRDe RedCAP used in this study. The file 'DOTIG_DATA_NoAA_LABELS_2023-10-31' corresponds to the data collected during the study, and the file 'DOTIG_DATA_AA_LABELS_2023-10-31' corresponds to the adverse events recorded during the study. Additionally, there is one more file which is the recoding of adverse events to "MEDDRA Terms (PT) vs 25.1" and "SOC".</p> <p>IBSAL uses the REDCap system for database creation. A detailed description of the information to be captured in the database is documented in the "DOTID_PGD_Data Dictionary Codebook" document. The structure of this data in the CRDe is described in the "DOTIG_PGD_Annotated CRDe document". The Annotated CRDe details the names of input objects in the CRDe with the name, format, and type of variables that will be used during the data entry process. The database must capture all the elements included in the "DOTIG_PGD_Variable List" document.</p> <p>The data management throughout the study is documented in the document DOTIG_PGD_Data Management Report.</p>

opencc-by-4.0Apr 2024View details →
zenodo44/100

The Water-ice Feature in Near-infrared Disk-scattered Light around HD 142527: Micron-sized Icy Grains Lifted up to the Disk Surface?

<p>This is a reproduction package for the paper &quot;The Water-ice Feature in Near-infrared Disk-scattered Light around HD 142527: Micron-sized Icy Grains Lifted up to the Disk Surface?&quot; by Tazaki et al. (2021). In this repository, you will find the data files used to make figures in the paper. Source codes and scripts are&nbsp;included as well.</p>

opencc-by-4.0Jan 2022View details →
zenodo44/100

CRIRES high-resolution near-infrared spectroscopy of diffuse interstellar band profiles

<p>This archive contains data used for the paper:</p> <p>CRIRES high-resolution near-infrared spectroscopy of diffuse interstellar band profiles. Detection of 12 new DIBs in the YJ band and the introduction of a combined ISM sight line and stellar analysis approach</p> <p>Paper-DOI: 10.1051/0004-6361/202142990</p> <p>It contains reduced oCRIRES spectra. For more details on the reduction see the paper.</p>

opencc-by-4.0Apr 2022View details →
zenodo44/100

Functional Near-Infrared Spectroscopy Reveals Delayed Hemodynamic Changes in the Primary Motor Cortex During Fine Motor Tasks and Decreased Interhemispheric Connectivity in Parkinson's Disease Patients

<p>This dataset contains functional near-infrared spectroscopy (fNIRS) data from 20 patients with Parkinson&rsquo;s disease and 20 age- and sex-matched healthy subjects without movement disorders. There are 3 folders, each corresponding to a different task: a 10-second finger-tapping task, a 2-minute walking task, and a 6-minute resting-state. When using this dataset, please cite our work:</p> <div> <div>Guevara, E., Rivas-Ruvalcaba, F. J., Kolosovas-Machuca, E. S., Ram&iacute;rez-El&iacute;as, M., Zapata, R. D. de L., Ramirez-GarciaLuna, J. L., &amp; Rodr&iacute;guez-Leyva, I. (2024). Parkinson&rsquo;s disease patients show delayed hemodynamic changes in primary motor cortex in fine motor tasks and decreased resting-state interhemispheric functional connectivity: A functional near-infrared spectroscopy study. <em>Neurophotonics</em>, <em>11</em>(2), 025004. <a href="https://doi.org/10.1117/1.NPh.11.2.025004">https://doi.org/10.1117/1.NPh.11.2.025004</a></div> <div> <div> <div>Guevara, E., Solana-Lavalle, G., &amp; Rosas-Romero, R. (2024). Integrating fNIRS and machine learning: Shedding light on Parkinson&rsquo;s disease detection. <em>EXCLI Journal</em>, <em>23</em>, 763&ndash;771. <a href="https://doi.org/10.17179/excli2024-7151">https://doi.org/10.17179/excli2024-7151</a></div> <div> <div> <div> <div> <div>Guevara, E., Kolosovas-Machuca, E. S., &amp; Rodr&iacute;guez-Leyva, I. (2024). Exploring motor cortex functional connectivity in Parkinson&rsquo;s disease using fNIRS. <em>Brain Organoid and Systems Neuroscience Journal</em>, <em>2</em>, 23&ndash;30. <a href="https://doi.org/10.1016/j.bosn.2024.04.001">https://doi.org/10.1016/j.bosn.2024.04.001</a></div> </div> </div> </div> </div> </div> </div> </div>

opencc-by-4.0May 2023View details →
zenodo44/100

Data supporting publication: Nanoscale Mechanical Manipulation of Ultrathin SiN Membranes Enabling Infrared Near-Field Microscopy of Liquid-Immersed samples

<p>This repository includes the data corresponding to the figures shown in the journal article entitled Nanoscale Mechanical Manipulation of Ultrathin SiN Membranes Enabling Infrared Near-Field Microscopy of Liquid-Immersed samples, published in small.&nbsp;</p>

opencc-by-4.0Aug 2024View details →
zenodo44/100

Spectral data associated to the publication: "Near-infrared reflectance spectroscopy of sublimating salty ice analogues. Implications for icy moons" by R. Cerubini et al. (Planetary and Space Science 211, 2022)

<p>This is the complete set of experimental NIR reflectance data collected by R. Cerubini and co-authors for the article &quot;Near-infrared reflectance spectroscopy of sublimating salty ice analogues. Implications for icy moons&quot; published in Planetary and Space Science 211 (2022). doi: https://doi.org/10.1016/j.pss.2021.105391.</p> <p>The article itself is published in open-access and provides the methodology for the spectral aquisitions, discussion of the errors and uncertainties, analysis of the spectra and implications for the composition of Solar System surfaces.</p> <p>The data are contained in ASCII files (columns separated by comma). The first column is the wavelength (in micrometers) and the other columns contain the reflectance data (in unit of reflectance factor). The different compositions are indicated in the filenames and correspond directly to the figures in the published paper.</p> <p>&nbsp;</p> <p>&nbsp;</p>

opencc-by-4.0Jan 2023View details →
zenodo44/100

Dataset for "Blue-shift photoconversion of near-infrared fluorescent proteins for labeling and tracking in living cells and organisms"

<p>Dataset that supports the observation, characterization and application of the blue-shift photoconversion of the near infrared proteins, miRFPs, reported in the manuscript: &quot;Blue-shift photoconversion of near-infrared fluorescent proteins for labeling and tracking in living cells and organisms&quot;. The data references to the specific figures and&nbsp;graphs in the manuscript.</p>

opencc-by-4.0Mar 2023View details →
zenodo44/100

DATASET: Near-Infrared Photothermal Ablation of Biofilms using Protein-Functionalized Gold Nanospheres with a Tunable Temperature Response

<p>This dataset contains the DLS, TEM, temperature data, and other experimental data to accompany the manuscript.</p>

opencc-by-4.0Aug 2023View details →
zenodo40/100

The near‐infrared autofluorescence fingerprint of the brain

<p>The brain is a vital organ involved in most of the central nervous system disorders. Their diagnosis and treatment require fast, cost‐effective, high‐resolution and high‐sensitivity imaging. The combination of a new generation of luminescent nanoparticles and imaging systems working in the second biological window (near‐infrared II [NIR‐II]) is emerging as a reliable alternative. For NIR‐II imaging to become a robust technique at the preclinical level, full knowledge of the NIR‐II brain autofluorescence, responsible for the loss of image resolution and contrast, is required. This work demonstrates that the brain shows a peculiar infrared autofluorescence spectrum that can be correlated with specific molecular components. The existence of particular structures within the brain with well‐defined NIR autofluorescence fingerprints is also evidenced, opening the door to in vivo anatomical imaging. Finally, we propose a rational selection of NIR luminescent probes suitable for low‐noise brain imaging based on their spectral overlap with brain autofluorescence.</p>

opencc-by-4.0Sep 2020View details →
zenodo40/100

Reproduction package for "A strong H− opacity signal in the near-infrared emission spectrum of the ultra-hot Jupiter KELT-9b"

<p>This is a basic reproduction package for the paper "A strong H− opacity signal</p><p>in the near-infrared emission spectrum of the ultra-hot Jupiter KELT-9b"</p><p>by [Jacobs, B.; Désert, J. -M.; Pino, L. et al. (2022)](https://doi.org/10.1051/0004-6361/202244533).</p><p>&nbsp;</p><p>Abstract:</p><p>We present the analysis of a spectroscopic secondary eclipse of the hottest transiting exoplanet detected to date, KELT-9b, obtained with the Wide Field Camera 3 aboard the&nbsp;<i>Hubble</i>&nbsp;Space Telescope. We complement these data with literature information on stellar pulsations and&nbsp;<i>Spitzer</i>/Infrared Array Camera and Transiting Exoplanet Survey Satellite eclipse depths of this target to obtain a broadband thermal emission spectrum. Our extracted spectrum exhibits a clear turnoff at 1.4 μm. This points to H−&nbsp;bound-free opacities shaping the spectrum. To interpret the spectrum, we perform grid retrievals of self-consistent 1D equilibrium chemistry forward models, varying the composition and energy budget. The model with solar metallicity and C/O ratio provides a poor fit because the H−&nbsp;signal is stronger than expected, requiring an excess of electrons. This pushes our retrievals toward high atmospheric metallicities ([M/H] = 1.98−0.21+0.19) and a C/O ratio that is subsolar by 2.4<i>σ</i>. We question the viability of forming such a high-metallicity planet, and therefore provide other scenarios to increase the electron density in this atmosphere. We also look at an alternative model in which we quench TiO and VO. This fit results in an atmosphere with a slightly subsolar metallicity and subsolar C/O ratio ([M/H] = −0.22−0.13+0.17, log (C/O) = −0.34−0.34+0.19). However, the required TiO abundances are disputed by recent high-resolution measurements of the same planet.</p>

opencc-by-4.0Oct 2023View details →
zenodo40/100

Reproduction package for "Probing reflection from aerosols with the near-infrared dayside spectrum of WASP-80b"

<p>This is a basic reproduction package for the paper "Probing reflection from</p><p>aerosols with the near-infrared dayside spectrum of WASP-80b"</p><p>by [Jacobs, B.; Désert, J. -M.; Gao P. et al. (2023)](https://doi.org/10.3847/2041-8213/acfee9).</p><p>Abstract:</p><p>The presence of aerosols is intimately linked to the global energy budget and the composition of a planet's atmospheres. Their ability to reflect incoming light prevents energy from being deposited into the atmosphere, and they shape spectra of exoplanets. We observed five near-infrared secondary eclipses of WASP-80b</p><p>with the Wide Field Camera 3 (WFC3) aboard the Hubble Space Telescope to provide constraints on the presence and properties of atmospheric aerosols.</p><p>We detect a broadband eclipse depth of 34\pm10 ppm for WASP-80b. We detect a higher planetary flux than expected from thermal emission alone at 1.6 sigma, which hints toward the presence of reflecting aerosols on this planet's dayside, indicating a geometric albedo of A_g&lt;0.33 at 3 sigma.</p><p>We paired the WFC3 data with Spitzer data and explored multiple atmospheric models with and without aerosols to interpret this spectrum.</p><p>Albeit consistent with a clear dayside atmosphere, we found a slight preference for near-solar metallicities and for dayside clouds over hazes. We exclude soot haze formation rates higher than 10^{-10.7} g cm^{-2} s^{-1} and tholin formation rates higher than 10^{-12.0} g cm^{-2} s^{-1} at 3 sigma.</p><p>We applied the same atmospheric models to a previously published WFC3/Spitzer transmission spectrum for this planet and found weak haze formation.</p><p>A single soot haze formation rate best fits both the dayside and the transmission spectra simultaneously. However, we emphasize that no models provide satisfactory fits in terms of the chi-square of both spectra simultaneously, indicating longitudinal dissimilarity in the atmosphere's aerosol composition.</p>

opencc-by-4.0Oct 2023View details →
zenodo40/100

The NGDEEP NIRIS calibration files for 'The Next Generation Deep Extragalactic Exploratory Public Near-Infrared Slitless Survey Epoch 1 (NGDEEP-NISS1): Extra-Galactic Star-formation and Active Galactic Nuclei at 0.5 < z < 3.6

<p>GRISMCONF configurations files used in Pirzkal et al. 2024. These contain the full field calibrated solution for the dispersion solution, trace as well as wavelength calibration. They provide a mean to extract NIRISS WFSS spectra obtained using the F115W, F150W, or F200W to within an acccuracy better than 0.25 pixel over most of the field of view. &nbsp;Wavelength calibration of both grism was verified to be accurate to within 15A over most of the field of view. Details can be found in Appendix A of Pirzkal et al. 2024.</p>

opencc-by-4.0Apr 2024View details →
dryad40/100

Data from: Non-invasive estimation of absorbed ionizing radiation dose in mice using Near-Infrared Spectroscopy (NIRS) and aquaphotomics

<p>Accurate measurement of ionizing radiation exposure, whether therapeutic or accidental, is of utmost importance in various scenarios. This paper presents a study that addresses this critical need by utilizing near-infrared (NIR) spectroscopy and aquaphotomics to estimate radiation dose exposure in mouse models subjected to X-ray irradiation. The analysis of NIR spectra acquired from the mouse abdomen enabled non-invasive estimation of radiation doses ranging from 0.5 to 6.5 Gy, immediately following the irradiation exposure. The findings were consistent with the impact of total body irradiation in mice, as evidenced by measures such as animal survival rate, alterations in body weight observed over a 30-day post-exposure period, and changes in hematocrit levels. The spectroscopic measurements were based on detecting changes in the molecular structure of body water after radiation exposure, utilizing the water spectral pattern as a multidimensional biomarker. While further validation in nonhuman primates is necessary, the findings demonstrate a simple, non-destructive, and rapid method that holds promise for the estimation of radiation exposure across a range of doses, applicable to both clinical applications and catastrophic radiation events. These advancements in radiation dose quantification have significant implications for the timely and precise assessment of radiation exposure in humans.</p>

opencc-zeroApr 2024View details →
zenodo40/100

Development of a Low-Cost Method for Quantifying Microplastics in Soils and Compost Using Near-Infrared Spectroscopy

<p>Datasets and scripts for data evaluation</p>

opencc-by-4.0Mar 2022View details →
zenodo40/100

Carbon Nanotube Uptake in Cyanobacteria for Near-infrared Imaging and Enhancing Bioelectricity Generation in Living Photovoltaics

<p>Dataset of the work entitled &quot;Carbon Nanotube Uptake in Cyanobacteria for Near-infrared Imaging and Enhancing Bioelectricity Generation in Living Photovoltaics&quot;.</p>

opencc-by-4.0Jun 2022View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record