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15 results for “neural decoding”
Post-hoc labeling of arbitrary EEG recordings for data-efficient evaluation of neural decoding methods
<p>EEG signals recorded from seven healthy subjects. On average, Seventy-three minutes of EEG data were recorded from 31 electrodes placed according to the extended 10-20 system. Signals are used in the paradigm-agnostic post-hoc labeled dataset generation framework for benchmarking of oscillatory neural decoding methods.</p>
A Memristive Neural Decoder for Cryogenic Fault-Tolerant Quantum Error Correction - Syndromes Dataset
<p>Simulated sydromes measurement of quantum surface code error correction.<br>Used for the paper: "<a href="https://doi.org/10.48550/arXiv.2307.09463">A Memristive Neural Decoder for Cryogenic Fault-Tolerant Quantum Error Correction</a>".</p> <p>File names: <code>d-<surface_code_distance>_pfr-<physical_fault_rate>_nb-<number_of_samples></code></p> <p>Each file is formatted as csv with the following columns:</p> <ul> <li>label: binary label (0: no error, 1: error)</li> <li>syndromes: syndrome measurement sequence (tuples of the form (round, syndromes))</li> <li>quantity: number of samples for this label + syndrome sequence</li> </ul> <p>Only distance 3 is currently available with 10M samples for each physical fault rate.</p> <p>The data generation relies on <a href="https://github.com/quantumlib/Stim" target="_blank" rel="noopener">Stim</a>.</p>
A Memristive Neural Decoder for Cryogenic Fault-Tolerant Quantum Error Correction - Simulation Data
<p>Simulation output data used to generate figures of the paper: "<a href="https://doi.org/10.48550/arXiv.2307.09463">A Memristive Neural Decoder for Cryogenic Fault-Tolerant Quantum Error Correction</a>"</p>
Neural structure of a sensory decoder for motor control
<p>Data associated with 'Neural structure of a sensory decoder for motor control.' Egger, SW and Lisberger, SG. <em>Nature Communications</em>, 2022.</p>
EEG Dataset for 'Decoding of selective attention to continuous speech from the human auditory brainstem response' and 'Neural Speech Tracking in the Theta and in the Delta Frequency Band Differentially Encode Clarity and Comprehension of Speech in Noise'.
<p>The repository contains the unprocessed EEG data recorded for the publications [1, 2]. For convenience, the onsets of the EEG data provided here are time-aligned with the onsets of the audio books in the 'audiobooks' folder, and the EEG data are provided in HDF5 format. Please refer to the original version of this dataset for more details.</p> <p>More details, as well as the original data files, are available at the original repository <a href="https://doi.org/10.5281/zenodo.7086209">here</a>.</p> <p>Examples of using these data (preprocessing, fitting linear models) can be found <a href="https://github.com/Mike-boop/trf-examples">here</a>.</p> <p>The English conditions (clean, lb, mb, hb, fM, fW) comprised a single recording session. The Dutch conditions (cleanDutch, lbDutch, mbDutch, hbDutch) comprised a separate recording session. You see which participants took part in each session in session_info.json.</p> <p>Please note some details about the stimulus presentation for the various listening conditions:</p> <ul> <li>English speech-in-babble-noise (lb, mb, hb): babble noise was played by itself for one second before the audiobook track began. The babble noise was also played for one second after the audiobook track ended. Therefore, you should discard the first second and the last second from these trial during your analysis.</li> <li>Dutch speech-in-babble-noise (lbDutch, mbDutch, hbDutch): the story (narrated in Dutch) was played by itself for one second before the babble noise track began. Then, the babble noise was increased linearly in amplitude for one second. Therefore, you should discard the first two seconds from these trials during your analysis.</li> <li>Dutch in quiet, and Dutch-in-babble-noise (cleanDutch, lbDutch, mbDutch, hbDutch): some English sentences were embedded in the Dutch narratives in order to encourage attention. You should crop these from your analysis. The onsets and offsets of the English sentences (in samples, at 44100Hz) are provided in the audiobooks/*Dutch/english_onsets_info.json files.</li> <li>Competing-speakers conditions (fM, fW): sometimes the attended track is longer than the unattended track, or vice-versa. The onsets of both tracks are aligned. You should crop the trial to the length of the shortest track for your analysis.</li> </ul> <p>If you use this data, please cite the original publications, as well as this repository [1,2,3].</p> <p>[1] Etard O, Kegler M, Braiman C, Forte A E and Reichenbach T. “Decoding of selective attention to continuous speech from the human auditory brainstem response” 2019. <em>NeuroImage</em> <strong>200</strong> 1–11</p> <p>[2] Etard O and Reichenbach T. “Neural speech tracking in the theta and in the delta frequency band differentially encode clarity and comprehension of speech in noise” 2019. <em>J. Neurosci.</em> <strong>39</strong> 5750–9</p> <p>[3] Etard O and Reichenbach T. "EEG Dataset for 'Decoding of selective attention to continuous speech from the human auditory brainstem response' and 'Neural Speech Tracking in the Theta and in the Delta Frequency Band Differentially Encode Clarity and Comprehension of Speech in Noise". Doi: 10.5281/zenodo.7086208</p>
Deep in the Bowel: Highly Interpretable Neural Encoder-Decoder Predicts Gut Metabolites from Gut Microbiome: Supplemental Data
<p>This upload contains the supplemental data to the manuscript titled, "Deep in the Bowel: Highly Interpretable Neural Encoder-Decoder Predicts Gut Metabolites from Gut Microbiome". It contains the transformed data used to train the model (*-grouped-clr.csv), the latent feature space (latent_z.txt), and the differential abundance results (*DA*.csv).</p>
Decoding thermal resilience in fish: Acute warming tolerance is associated with neural failure in rainbow trout
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Data from: Movement-responsive deep brain stimulation for Parkinson’s Disease using a remotely optimized neural decoder
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Data for "Efficient neural decoding of self-location with a deep recurrent network"
<p>Data for reproducing results with Bayesian decoders (MLE and Bayesian with memory) reported in the article</p> <p>"Efficient neural decoding of self-location with a deep recurrent network".</p> <p> </p> <p>This data should be used with the code found in https://github.com/NeuroCSUT/RatGPS and should be placed in the Bayesian/Data folder of the codebase.</p> <p> </p>
Characterization of deep neural network features by decodability from human brain activity
<p>We present a dataset derived through the DNN feature decoding analyses (<a href="https://www.nature.com/articles/ncomms15037">Horikawa and Kamitani, 2017</a>), including true and decoded feature values of DNNs (AlexNet and VGG19) and decoding accuracies of individual DNN features with their rankings. The decoding accuracies of individual DNN features were highly correlated across subjects, suggesting the systematic differences between the brain and DNNs. The unpreprocessed fMRI data is available from the OpenNeuro (<a href="https://openneuro.org/datasets/ds001246">https://openneuro.org/datasets/ds001246</a>). We hope the present dataset will contribute to reveal the gap between the brain and DNNs and provide an opportunity to make use of the decoded features for further applications.</p>
Neural preprocessed data associated to "Decoding grasp and speech signals from the cortical grasp circuit in a tetraplegic human"
<p>This dataset is composed of electrophysiology data from a tetraplegic human participant implanted with three 96 channel Utah arrays (Blackrock) in the supramarginal gyrus (SMG), ventral premotor cortex (PMV) and somatosensory cortex. The dataset includes preprocessed (spike sorted) firing rate data for 96 recorded channels, as described in Wandelt et al (2022), "Decoding grasp and speech signals from the cortical grasp circuit in a tetraplegic human" published in Neuron (<a href="https://doi.org/10.1016/j.neuron.2022.03.009">10.1016/j.neuron.2022.03.009</a>).</p> <p>To run the code associated with the processed data, download it here https://zenodo.org/record/6330179.</p>
Dataset underpinning: "Scalable Neural Decoder for Topological Surface Codes"
<p>The dataset belonging to the paper: Scalable Neural Decoder for Topological Surface Codes</p>
Joint identification of groundwater contamination source and heterogeneous hydrogeological parameters in LNAPL contaminated site based on deep convolutional encoder-decoder neural networks
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Neuroimaging Study for Decoding Emotional States and Identifying Neural Circuits to Disengage From Negative Thinking
ClinicalTrials.gov study NCT06254144. IPD Sharing: NO. Countries: 1. Publications: 0.
OASIS EEG Dataset: Decoding the Neural Signatures of Valence and Arousal From Portable EEG Headset
<p>Emotion classification using electroencephalography (EEG) data and machine learning techniques have been on the rise in the recent past. However, past studies use data from medical-grade EEG setups with long set-up times and environment constraints. The images from the OASIS image dataset were used to elicit valence and arousal emotions, and the EEG data was recorded using the Emotiv Epoc X mobile EEG headset. We propose a novel feature ranking technique and incremental learning approach to analyze performance dependence on the number of participants. The analysis is carried out on publicly available datasets: DEAP and DREAMER for benchmarking. Leave-one-subject-out cross-validation was carried out to identify subject bias in emotion elicitation patterns. The collected dataset and pipeline are made open source. </p> <p>Code: <a href="https://github.com/rohitgarg025/Decoding_EEG">https://github.com/rohitgarg025/Decoding_EEG</a></p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.