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datasets available to search
ShareScore release 0.9.0
Dataset results
18 results for “nucleoprotein”
Balanced immunity to Lassa virus glycoprotein and nucleoprotein is associated with full protection of macaques after a single shot of different vaccines
GEO Series GSE132998. Macaca fascicularis. 71 samples. Type: Expression profiling by high throughput sequencing.
N460S on PB2 and I163T on nucleoprotein synergistically enhance the replication and pathogenicity of influenza B virus
GEO Series GSE289500. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Characterization of young and aged lung tissue-resident influenza nucleoprotein-specific CD8 memory T cells
GEO Series GSE159065. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Synthetic DNA co-immunization with vaccine-aligned common consensus nucleoprotein and hemagglutinin protects mice against lethal influenza infection with a single immunization
GEO Series GSE306862. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing.
Reduced Nucleoprotein availability impairs negative-sense RNA virus replication and promotes host recognition
GEO Series GSE165340. Homo sapiens. 27 samples. Type: Expression profiling by high throughput sequencing; Other.
RfaH counter-silences inhibition of transcript elongation by H-NS–StpA H-NS nucleoprotein filaments in pathogenic E. coli
GEO Series GSE212064. Escherichia coli CFT073; Escherichia coli. 97 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Dataset of article "Presence of SARS-CoV-2 Nucleoprotein in Cardiac Tissues of Donors with Negative COVID-19 Molecular Tests"
<p>The 2019 Coronavirus disease (COVID-19) outbreak had detrimental effects on essential medical services such as organ and tissue donation. Lombardy, one of the most active Italian regions in organ/tissue procurement, has been strongly affected by the COVID-19 pandemic. To date, data concerning the risk of SARS-CoV-2 transmission after tissue transplantation are controversial. Here, we aimed to evaluate the presence/absence of SARS-CoV-2 in different cardiac tissues eligible for transplantation obtained from Lombard donors. We used cardiovascular tissues from eight donors potentially suitable for pulmonary valve transplantation. All donor subjects involved in the study returned negative results for the SARS-CoV-2 RNA molecular tests (quantitative real-time reverse-transcription PCR, qRT-PCR, and chip-based digital PCR) in nasopharyngeal swabs (NPS) or bronchoalveolar lavage (BAL). None of the eight donors included in this study revealed the presence of the SARS-CoV-2 viral genome. However, evaluation of the protein content of pulmonary vein wall (PVW) tissue revealed variable levels of SARS-CoV-2 nucleoprotein signal in all donors. Our study demonstrated for the first time, to the best of our knowledge, that viral nucleoprotein but not viral RNA was present in the examined tissue bank specimens, suggesting the need for caution and in-depth investigations on implantable tissue specimens collected during the COVID-19 pandemic period.</p>
The inability to disassemble Rad51 nucleoprotein filaments leads to aberrant mitosis and cell death
GEO Series GSE227383. Saccharomyces cerevisiae. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Multimodal multiscale analysis reveals flexible DNA contacts of bacterial nucleoprotein filaments
GEO Series GSE157512. Escherichia coli. 36 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Alteration of gene expression patterns in the liver and spleen following exposure to nucleoprotein diet in the mouse LPS injection model
GEO Series GSE28176. Mus musculus. 4 samples. Type: Expression profiling by array.
Dataset related to the article "Presence of SARS-CoV-2 nucleoprotein in cardiac tissues of donors negative to COVID-19 molecular tests"
<p>This record contains raw data related to the article “Presence of SARS-CoV-2 nucleoprotein in cardiac tissues of donors negative to COVID-19 molecular tests”</p> <p> </p> <p>Abstract</p> <p><strong>Background:</strong> COVID-19 outbreak caused detrimental effects on essential medical services as organ and tissue donation. Lombardy, one of the most active Italian region in organ/tissue procurement, has been strongly affected by the COVID-19 pandemic. To date, data concerning the risk of SARS-CoV-2 transmission after tissue transplantation are controversial. Here we aim to evaluate the presence/absence of SARS-CoV-2 in different cardiac tissues eligible for transplantation obtained from Lombard donors.</p> <p><strong>Methods and Results:</strong> We used cardiovascular tissues from eight donors potentially suitable for pulmonary valve transplantation. All donor subjects involved in the study were negative for the SARS-CoV-2 RNA molecular tests (qRT-PCR and chip-based digital PCR) in NPS and/or BAL. None of the 8 donors included in this study revealed viral genome SARS-CoV-2 presence. However, the evaluation of protein content of pulmonary vein wall (PVW) tissue revealed in all donors variable levels of SARS-CoV-2 nucleoprotein signal.</p> <p><strong>Conclusion:</strong> Our study demonstrated for the first time, to the best of our knowledge, that, viral nucleoprotein but not viral RNA was present in the tissue bank examined specimens, suggesting caution and in-depth investigations on implantable tissue specimens collected during COVID-19 pandemic period.</p>
Comparative global gene expression profiling of mice liver and spleen fed with nucleoprotein (NP) diets
GEO Series GSE28505. Mus musculus. 4 samples. Type: Expression profiling by array.
Coordination between transcriptional orientation and nucleoprotein complexes generate chromatin configuration of IgH locus [Capture Hi-C]
GEO Series GSE241661. Mus musculus. 14 samples. Type: Other.
Coordination between transcriptional orientation and nucleoprotein complexes generate chromatin configuration of IgH locus [ChIP-Seq]
GEO Series GSE241668. Mus musculus. 48 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
8-Oxoguanine DNA glycosylase 1 hijacked by nucleoprotein conceals guanine oxidation in respiratory syncytial virus RNA
GEO Series GSE269769. Homo sapiens. 4 samples. Type: Other.
Coordination between transcriptional orientation and nucleoprotein complexes generate chromatin configuration of IgH locus [Directional RNA-Seq]
GEO Series GSE241667. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing.
Coordination between transcriptional orientation and nucleoprotein complexes generate chromatin configuration of IgH locus
GEO Series GSE241741. Mus musculus. 96 samples. Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Coordination between transcriptional orientation and nucleoprotein complexes generate chromatin configuration of IgH locus [HiChIP]
GEO Series GSE241740. Mus musculus. 14 samples. Type: Other.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.