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PsPM-REW2: SCR, ECG, respiration, and eyetracking measurements in a Pavlovian appetitive conditioning task with juice delivery with acquisition and recall test after one week
<p>This dataset contains skin conductance responses (SCR), electrocardyogram (ECG), respiration, pupil size (PSR), and gaze coordinates measurements for 34 healthy unmedicated participants (20 females and 14 males aged 24.9 +/- 4.1) participating in a Pavlovian differential cued rewarding conditioning experiment with 2 sessions. <br>CSs were isoluminant colored triangles presented on the screen center with grey background.<br>US was a sip of the favourite juice selected individually. SOA between the CS onset and US was 5.5 s. Participants underwent the conditioning task with CSs (CS+ 50% reinforced) and US delivery in session 1 with 2 blocks, and were tested in a retention/extinction task one week later in session 2 with 2 blocks. No US was delivered during session 2. The ITI was jittered on each trial uniformly at random between 9 to 16 s. The blocks in each session were recorded on the same day with self-paced breaks.</p>
PsPM-REW1: SCR, ECG, respiration, and eyetracking measurements in a Pavlovian appetitive conditioning task with juice delivery with acquisition and recall test after one week
<p>This dataset contains skin conductance responses (SCR), electrocardyogram (ECG), respiration, pupil size (PSR), and gaze coordinates measurements for 37 healthy unmedicated participants (26 females and 11 males aged 24.2 +/- 4.2) participating in a Pavlovian differential cued rewarding conditioning experiment with 2 sessions. <br>CSs were isoluminant colored triangles presented on the screen center with grey background.<br>US was a sip of the favourite juice selected individually. SOA between the CS onset and US was 5.5 s. Participants underwent the conditioning task with CSs (CS+ 50% reinforced) and US delivery in session 1 with 2 blocks, and were tested in a retention/extinction task one week later in session 2 with 2 blocks. No US was delivered during session 2. The ITI was jittered on each trial uniformly at random between 9 to 16 s. The blocks in each session were recorded on the same day with self-paced breaks.</p>
Microcystin-LR (one of the toxic congeners of microcystin) exposure causes crayfish to forget previous fight outcomes as well as previous opponents, MI, 2025
Harmful algal blooms are increasing across the globe as a function of nutrient run off and climate change. While the study of the mechanisms that underlie the blooms themselves are abundant, the impact of the toxins produced by blooms needs more research. Crayfish are keystone species in aquatic habitats and rely on chemoreception for many of their ecosystem functions. Crayfish were placed in a fight arena for measure both the outcome and dynamics aspects of agonistic encounters. Then the loser of the fights were exposed to either controls or microcystin for four days. Afterwards, the crayfish fought either another unfamiliar opponent or the previous opponent. The data contained in this package has the concentrations of microcystin exposure, morphological data on the crayfish, and then behavioral data from the two different fights. The behavioral data has two categories: time spent at different levels of intensity and time it took the crayfish pair to reach a certain intensity.
Quality-checked, one-hour resolution cruise track of the Antarctic Circumnavigation Expedition (ACE) undertaken during the austral summer of 2016/2017.
<p><strong>Dataset abstract</strong></p> <p>The Antarctic Circumnavigation Expedition (ACE), undertaken in the austral summer of 2016/2017 recorded the cruise track using two independent geo-location instruments: one using GLobal NAvigation Satellite Systems (GLONASS; hereafter referred to as GLONASS) and another primarily using the Global Positioning System (GPS; hereafter referred to as the Trimble GPS). Daily log files were recorded in real-time from both instruments during the expedition and added to MySQL database tables. Following the expedition, quality-checking work has been undertaken to provide a one-second resolution set of positions for the cruise track. Here we present the final quality-checked dataset aggregated to a resolution of one hour. This is of use for understanding the position of the vessel to a lower precision, such as for plotting the track throughout the voyage.</p> <p><strong>Dataset contents</strong></p> <ul> <li>ace_cruise_track_1hour_YYYY-MM.csv, data file, comma-separated values</li> <li>README.txt, metadata, text file</li> <li>data_file_header.txt, metadata, text file</li> </ul> <p><strong>Dataset license</strong></p> <p>This quality-checked cruise track dataset is made available under the Creative Commons Attribution 4.0 International License (CC BY 4.0) whose full text can be found at https://creativecommons.org/licenses/by/4.0/</p>
Investigating the conformal behaviour of SU(2) with one adjoint Dirac flavor --- data release
<p>This dataset collects data and analysis results for non-perturbative lattice field theory calculations investigating the SU(2) gauge theory with one Dirac fermion in the adjoint representation. More detailed information is included in the file README_datapackage.md</p>
Metabolism dataset: one year of high-frequency temperature, dissolved oxygen, wind, photosynthetically active radiation observations and low-frequency nutrient data for 58 lakes in the Global Lake Ecological Observatory Network
Understanding controls on primary productivity is essential for describing ecosystems and their responses to environmental change. Lake primary production is strongly controlled by inputs of nutrients and colored dissolved organic matter. While past studies have developed mathematical models of this nutrient-color paradigm, broad empirical tests of these models are scarce. We compiled data from 58 diverse and globally distributed and mostly temperate lakes to test such a model and improve understanding and prediction of the controls on lake primary production. These lakes varied widely in size (0.02-2300 km2), pelagic gross primary production (20-8000 mg C m-2 d-1), and other characteristics. The data package includes high-frequency dissolved oxygen, water temperature, wind speed, and solar radiation data as well as daily estimates of GPP and ER derived from those data. In addition, the data package includes median in-lake and stream concentrations of dissolved organic carbon and total phosphorus for a subset of 18 of those lakes.
Hubbard Brook Experimental Forest: Watershed 3 – One year of resin-extracted solutes from variably saturated soils
Hbr363: WS3 One year of resin-extracted solutes from variably saturated soils The Lateral Weathering Study looks at spatial patterns of mineral weathering processes at Hubbard Brook Experimental Forest. This project is characterizing mineral and elemental depletion/enrichment, soil morphology and chemistry, solute transport, and groundwater chemistry along hydropedological gradients. This dataset provides the total elemental mass of inorganic solutes (Ca, Na, Mg, Al, Fe, Mn, P, and S) as well as dissolved organic carbon (DOC) that were extracted off resins installed into shallow groundwater wells (~30-100cm) in Watershed 3. Resin packs were deployed for a total of one year (August 2019-2020) with four consecutive deployment periods, to avoid overloading resin ion capacity. Total mass for each solute was accounted for an entire resin pack, which was 5cm in height and 5cm in diameter, containing approximately 90 g of resin. Resin packs were installed in three different topographic positions along three transects (sites = 9), to characterize solute mass fluxes through different hydropedological units.
MCR LTER: Coral Reef: Farmerfish gardens help buffer stony corals against marine heat waves, data for Honeycutt et al., PLOS One 2023
These data were generated in support of the manuscript: Honeycutt RC, Holbrook SJ, Brooks, AJ, and RJ Schmitt, PLOS One In Moorea, French Polynesia, we evaluated the response and fate of stony coral following a major thermal stress event in 2019 that caused a substantial amount of branching coral (dominantly Pocillopora) to bleach and die. We investigated whether Pocillopora colonies that occurred within territorial gardens protected by the farmerfish Stegastes nigricans were less susceptible to or survived bleaching better than Pocillopora on adjacent, undefended substrate. Bleaching prevalence and severity, which were quantified for >1,100 colonies shortly after they bleached, did not differ between colonies within or outside of defended gardens. By contrast, 399 focal colonies followed for one year revealed that a bleached coral within a garden was a third less likely to suffer complete colony death and, for survivors, about twice as likely to recover to its pre-bleaching cover of living tissue compared to Pocillopora outside of a farmerfish garden. Our findings indicate that while residing in a farmerfish garden may not reduce the bleaching susceptibility of a coral during thermal stress, it does help buffer a bleached coral against severe outcomes. This oasis effect of farmerfish gardens, where survival and recovery of thermally-damaged corals are enhanced, is another mechanism that helps explain why large Pocillopora colonies are far more abundant in farmerfish territories than elsewhere in the lagoons of Moorea, despite gardens being much less common. As such, farmerfish may have a growing role in maintaining the resilience of branching corals as the frequency and intensity of marine heat waves continue to increase. This material is based upon work supported by the U.S. National Science Foundation under Grant No. OCE 16-37396 (and earlier awards) as well as a generous gift from the Gordon and Betty Moore Foundation. Research was completed under permits issued
One-minute average horizontal wind velocity data (not corrected for air-flow distortion) from the Antarctic Circumnavigation Expedition (ACE) 2016/2017 legs 0 to 4.
<p><strong>Dataset abstract</strong></p> <p>This dataset contains the one-minute average horizontal wind velocity data from the Antarctic Circumnavigation Expedition (ACE) 2016/2017 legs 0 to 4. The data has been filtered for spurious observations and the true wind correction has been redone using the quality checked one-minute ship track velocity data. This data set has not been corrected for air-flow distortion, which was caused by the ship's super structure. The flow-distortion corrected data should be used for studies interested in the actual true wind speed near the ship's location.</p> <p><strong>Dataset contents</strong></p> <ul> <li>wind-observations-stbd-uncorrected-5min-legs0-4.csv, data file, comma-separated values</li> <li>wind-observations-port-uncorrected-5min-legs0-4.csv, data file, comma-separated values</li> <li>data_file_header, metadata, text format</li> <li>README.txt, metadata, text format</li> </ul> <p><strong>Dataset license</strong></p> <p>This one-minute averaged wind velocity dataset is made available under the Creative Commons Attribution 4.0 International License (CC BY 4.0) whose full text can be found at https://creativecommons.org/licenses/by/4.0/</p>
Data for Decomposing Fomes fomentarius fruiting bodies, unlike fresh ones, represent a bacteria-rich habitat primarily driven by Arthropoda
<p>These files represent the data files necessary to run the R script analysis for the paper "Decomposing<i> Fomes fomentarius</i> fruiting bodies, unlike fresh ones, represent a bacteria-rich habitat primarily driven by Arthropoda."</p><p>A link to the paper and code will be provided once the paper has been published.</p>
One-hectare fine-scale dataset of a fynbos plant community in the Cape Floristic Region
<p>Cape fynbos, which forms part of the Cape Floristic Region (CFR) of South Africa, a global biodiversity hotspot, is renowned for its high levels of plant species endemism and diversity. This extraordinary ecosystem, characterised by nutrient-poor soils and fire-adapted vegetation, is a treasure trove of endemic flora. However, this fragile system faces increasing threats from habitat loss, climate change, and invasive species. Pristine fynbos, naturally high in plant diversity and which forms a large part of the CFR, presents an ideal opportunity to gather fine-scale data on community assembly patterns. Most fynbos vegetation surveys use a plot size of about 100 m2, with no spatial structures within plots to demarcate individual subplots. Here, a groundbreaking dataset is presented that fully covers 1-hectare of pristine fynbos, systematically gridded into 50 × 50 subplots, each measuring 2 × 2 m, arranged evenly within a square-shaped survey site. Each plot was assigned a unique Y–X coordinate combination. For each plot, all plant species present were recorded, along with their total percentage covers and maximum height values. Total percentage covers were also recorded for bare soil, rock, and termite mounds. This dataset provides a valuable contribution to the field of fynbos ecology, as well as plant community ecology in general, and establishes a benchmark for future one-hectare surveys of similar fynbos vegetation types, delineating the fine-scale composition and structure of fynbos in the CFR. The dataset will be useful for a wide audience, including community and spatial ecologists, plant and environmental scientists, and biodiversity informaticians and statistical ecologists, offering ideal data for testing new metrics of diversity and compositional turnover. Data in Brief, Volume 59, April 2025, 111334: <a title="Persistent link using digital object identifier" href="https://doi.org/10.1016/j.dib.2025.111334" target="_blank" rel="noreferrer noopener"><span><span>https://doi.org/10.1016/j.dib.2025.111334</span></span></a></p>
Regularized quantum periods for one-dimensional Fano manifolds
<p><strong>The database smooth_fano_1</strong></p> <p>This is a database of regularized quantum periods for one-dimensional Fano manifolds. There is one entry in the database.</p> <p>Each entry in the database is a key-value record with keys and values as described in the paper:</p> <p><em>Databases of Quantum Periods for Fano Manifolds</em>, Tom Coates and Alexander M. Kasprzyk, 2021.</p> <p>If you make use of this data, please cite the above paper and the DOI for this data:</p> <p>doi:10.5281/zenodo.5708188</p>
Data for manuscript Marmet, Studer, Lemoine, Grazioli, Bertholet & Gmel (2019). Reconsidering the associations between self-reported alcohol use disorder and mental health problems in the light of co-occurring addictions in young Swiss men. Plos One. DOI: 10.1371/journal.pone.0222806.
<p>Dataset for the manuscript Marmet, Studer, Lemoine, Grazioli, Bertholet & Gmel (2019). Reconsidering the associations between self-reported alcohol use disorder and mental health problems in the light of co-occurring addictions in young Swiss men. Plos One. DOI: 10.1371/journal.pone.0222806.</p> <p>The dataset contains all data needed to reproduce the results in the above cited manuscript. Variable description and labels can be found in the codebook. For further information on the instruments used please refer to the manuscript.</p> <p>The data was collected between April 2016 and March 2018 in Switzerland by the C-SURF study (<a href="http://www.c-surf.ch">www.c-surf.ch</a>). Participants were on average 25 years old when they answered the questionnaires. The final sample size used in the manuscript is 5516. Please note that the dataset contains 25 datasets created with multiple imputation, therefore there are no missing values in the dataset.</p> <p>The research protocol for this study was approved by the Human Research Ethics Committee of the Canton Vaud (Protocol No. 15/07). Data collection was funded by the Swiss National Science Foundation (FN 33CSC0-122679, FN 33CS30_139467, FN 33CS30_148493)</p>
Quality-checked, one-minute resolution cruise track of the Antarctic Circumnavigation Expedition (ACE) undertaken during the austral summer of 2016/2017.
<p><strong>Dataset abstract</strong></p> <p>The Antarctic Circumnavigation Expedition (ACE), undertaken in the austral summer of 2016/2017 recorded the cruise track using two independent geo-location instruments: one using GLobal NAvigation Satellite Systems (GLONASS; hereafter referred to as GLONASS) and another primarily using the Global Positioning System (GPS; hereafter referred to as the Trimble GPS). Daily log files were recorded in real-time from both instruments during the expedition and added to MySQL database tables. Following the expedition, quality-checking work has been undertaken to provide a one-second resolution set of positions for the cruise track. Here we present the final quality-checked dataset aggregated to a resolution of one minute. This is of use for understanding the position of the vessel to a lower precision.</p> <p><strong>Dataset contents</strong></p> <ul> <li>ace_cruise_track_1min_YYYY-MM.csv, data file, comma-separated values</li> <li>README.txt, metadata, text file</li> <li>data_file_header.txt, metadata, text file</li> </ul> <p><strong>Dataset license</strong></p> <p>This quality-checked cruise track dataset is made available under the Creative Commons Attribution 4.0 International License (CC BY 4.0) whose full text can be found at https://creativecommons.org/licenses/by/4.0/</p>
Dataset for the manuscript Marmet, Wicki, Gmel, Gachoud, Daeppen, Bertholet, Studer (2021). The psychological impact of the COVID-19 crisis is higher among young Swiss men with a lower socioeconomic status: evidence from a cohort study. Plos One. DOI:10.1371/journal.pone.0255050
<p>Dataset for the manuscript Marmet, Wicki, Gmel, Gachoud, Daeppen, Bertholet, Studer (2021). The psychological impact of the COVID-19 crisis is higher among young Swiss men with a lower socioeconomic status: evidence from a cohort study. Plos One DOI:10.1371/journal.pone.0255050</p> <p>The dataset contains all data needed to reproduce the results in the above cited manuscript. Variable description and labels can be found in the codebook. For further information on the instruments used please refer to the manuscript.</p> <p> </p>
One shot generalization in humans revealed through a drawing task - Dataset
<p>Dataset for:</p> <p>One shot generalization in humans revealed through a drawing task. Henning Tiedemann, Yaniv Morgenstern, Filipp Schmidt, Roland W Fleming. bioRxiv 2021.05.31.446461; doi: https://doi.org/10.1101/2021.05.31.446461</p>
Data of "Towards a More Reliable Forecast of Ice Supersaturation: Concept of a One-Moment Ice Cloud Scheme that Avoids Saturation Adjustment"
<p>These are the data used for generating the figures in the ACP article "Towards a More Reliable Forecast of Ice Supersaturation: Concept of a One-Moment Ice Cloud Scheme that Avoids Saturation Adjustment" by Sperber and Gierens.</p> <p>The data sets labeled "Box" have been generated by the stochastic box model, "adj" refers to the parameterisation using saturation adjustment and data labeled "par" originate from the newly developed parameterisation.</p> <p>The label "const" followed by a number refers to simulations with a constant updraught of the speed specified by the number in cm/s. The label "cos" refers to the simulations in which the updraught velocity follows a cosine function in time.</p> <p>"a10" labels simulations with less initial clear sky humidity fluctuations of plus/minus 10% instead of plus/minus 25%. "al0028" labels simulations with a higher deposition rate of 0.0028 1/s instead of 0.0003 1/s. "step10" labels simulations with a longer time step of 10 minutes instead of 1 minute.</p> <p>"Box_const2_rh1.txt" contains data from a simulation similar to "Box_const2.txt" but with an initial mean relative humidity of 100% instead of 110%. "Box_het.txt" contains data from a simulation including heterogeneous nucleation. "Box_slow_nuc.txt" contains data from a simulation where the deposition rate increases over time from zero after nucleation in every air parcel. "Box_upvar.txt" contains data from a simulation, where the updraught velocity in every air parcel varies randomly between 1 cm/s and 3 cm/s and the deposition rate inside the air parcel depends on the updraught velocity at the time of nucleation.</p> <p> </p> <p>The columns in the "Box" files represent from left to right:</p> <p>1. Time since the simulation start in s</p> <p>2. Cloud fraction</p> <p>3. Mean relative humidity across all air parcels</p> <p>4. Mean specific humidity across all air parcels</p> <p>5. Mean specific ice content across all air parcels</p> <p>6. Mean relative humidity across all cloudy air parcels</p> <p>7. Mean relative humidity across all clear air parcels</p> <p>8. Mean equilibrium supersaturation</p> <p>9. Mean threshold relative humidity for homogeneous nucleation</p> <p>10. Mean deposition rate across all cloudy air parcels</p> <p>11. Mean updraught velocity</p> <p> </p> <p>The columns in the "adj" files represent from left to right:</p> <p>1. Time since the simulation start in s</p> <p>2. Cloud fraction</p> <p>3. Mean relative humidity</p> <p>4. Mean specific humidity</p> <p>5. Mean specific ice content</p> <p>6. In-cloud Humidity</p> <p>7. Clear sky humidity</p> <p> </p> <p>The columns in the "par" files represent from left to right:</p> <p>1. Time since the simulation start in s</p> <p>2. Cloud fraction</p> <p>3. Mean relative humidity</p> <p>4. Mean specific humidity</p> <p>5. Mean specific ice content</p> <p>6. In-cloud Humidity</p> <p>7. Clear sky humidity</p> <p>8. Obsolete</p> <p>9. Equilibrium supersaturation</p>
Compost Amendments up to One Inch Restore Dry Rangeland Soil Health and Plant Productivity in New Mexico, 2020-2022
Dry rangelands are important systems for coproducing food and other ecosystem services, but degradation of productivity, diversity, and water holding capacity may require active intervention to restore. Use of compost amendments on grasslands has been shown to improve many outcomes related to carbon, water, and nutrients unless excessive amounts are used, but practitioners lack guidance of optimal and cost-effective use to meet their management goals. We compared compost additions from 0-2.54 cm at two ranches in New Mexico and measured plant composition and biomass, soil characteristics such as bulk density, infiltration rate, aggregate stability, and total carbon content under baseline conditions and one- and two years after addition.
Visual working memory: Study one Task fMRI and Behavioural response
Open the record for dataset details and reuse information.
Data for the paper Lemoine, Gmel, Foster, Marmet, Studer (2020). Multiple trajectories of alcohol use and the development of alcohol use disorder: do Swiss men mature-out of problematic alcohol use during emerging adulthood? Plos One. https://doi.org/10.1371/journal.pone.0220232
<p>Data for the paper Lemoine, Gmel, Foster, Marmet, Studer (2020). Multiple trajectories of alcohol use and the development of alcohol use disorder: do Swiss men mature-out of problematic alcohol use during emerging adulthood?</p> <p>Plos One. <a href="https://doi.org/10.1371/journal.pone.0220232">https://doi.org/10.1371/journal.pone.0220232</a></p> <p>Please refer to the paper for further information about the data.</p> <p> </p> <p>The dataset contains all data needed to reproduce the results in the above cited paper. Variable description and labels can be found in the codebook. For further information on the instruments used please refer to the paper.</p> <p>The dataset contains data for three waves that was collected between September 2010 and March 2018 in Switzerland by the C-SURF study (<a href="http://www.c-surf.ch/">www.c-surf.ch</a>). Participants were on average 20 years old at wave 1, 21 at wave 2 and 25 at wave 3 when they answered the questionnaires. The final sample size used in the paper is 4746 after excluding those that did not reply to a questionnaire or to a variable of interest for the main analysis.</p> <p>The research protocol for this study was approved by the Human Research Ethics Committee of the Canton Vaud (Protocol No. 15/07). Data collection was funded by the Swiss National Science Foundation (FN 33CSC0-122679, FN 33CS30_139467, FN 33CS30_148493).</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.