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23 results for “open-source software”
The potential of low-cost UAVs and open-source photogrammetry software for high-resolution monitoring of alpine glaciers: A case study from the Kanderfirn (Swiss Alps)
<p>This dataset contains high-resolution orthophotos (5 x 5 cm) and digital surface models (25 x 25 cm) of the Kandernfirn Glacier located in the Swiss Alps. Aerial images were aquired with a self-developed fixed-wing Unmanned Aerial Vehicle during ten surveys on five different days in 2017 and 2018. The open-source photogrammetry software OpenDroneMap (version 0.4.1) was used for image processing.</p> <p>The orthophotos and digital surface models were validated through dGNSS point measurements of ground control points. Please refer to the corresponding paper for information on the horizontal and vertical accuracy of the files.</p>
Dataset of Open-Source Software Developers Labeled by their Experience Level and Associated with their Software Metrics
<p>This dataset contains 703 anonymized developers extracted from 17 open-source projects from GitHub. Projects were chosen because they use:</p> <ul> <li>the Java programming language</li> <li>the <a href="https://spring.io/projects/spring-framework">Spring framework</a></li> <li><a href="https://maven.apache.org/">Maven</a> / <a href="https://gradle.org/">Gradle</a> build tools</li> </ul> <p>For all these developers, 23 software metrics were calculated for each project to which they contribute. These metrics are either calculated by analyzing the source code or relative to project management metadata. Each of these developers then have been manually annotated. To do this, developers have been searched for in professionnal social media such as:</p> <ul> <li><a href="https://www.linkedin.com/">Linkedin</a></li> <li><a href="https://twitter.com/">Twitter</a></li> <li><a href="https://github.com/">Github</a></li> </ul> <p><strong>This dataset is published in the following journal article: </strong></p> <p><strong>Dataset of Open-Source Software Developers Labeled by their Experience Level in the Project and their Associated Software Metrics, Q. Perez, C. Urtado and </strong><strong>S. Vauttier, Data In Brief, </strong></p> <p><a href="https://www.sciencedirect.com/science/article/pii/S2352340922010459">https://www.sciencedirect.com/science/article/pii/S2352340922010459</a></p>
Dataset of the paper "An Empirical Characterization of Software Bugs in Open-Source Cyber-Physical Systems"
<p><br> #Dataset Package for the paper "An Empirical Characterization of Software Bugs in Open-Source Cyber-Physical Systems"</p> <p><br> Description of the content:</p> <p><br> 1) "1_RQ-CPS-bugs-Taxonomy" folder contains all the main experimental data concerning the issues sampled and analyzed from all the Projects considered in the study,<br> including row-data on the taxonomy validtion steps.<br> <br> - Under "the sub-folder "1_Taxonomy-Raw-data" are reported the row-data concerning the taxonomy validtion steps </p> <p><br> 2) "2_Scripts" contains all scripts used to generate the issue data and sampled issue raw-data in the previous folders: </p> <p><br> - "setup.md" file in the folder describes how to set=up and run the script used for collecting and sampling the issues for the validation steps:<br> <br> - runJSONtoCSV.sh<br> - JSONtoCSV.py<br> - generateListOfAllSamples.py<br> - generateAllSamples.r<br> <br> Under "the sub-folder "1_Scripts/1_Data_Collection":<br> <br> <br> 3) "3_Final Taxonomy" folder contains the final Table representation (also reported in the previous folder) and main figures of the CPSs Bugs Taxonomy.</p>
Bee Tracker – an open-source machine-learning based video analysis software for the assessment of nesting and foraging performance of cavity-nesting solitary bees
<p>The foraging and nesting performance of bees can provide important information on bee health and is of interest for risk and impact assessment of environmental stressors. While radio-frequency identification (RFID) technology is an efficient tool increasingly used for the collection of behavioral data in social bee species such as honey bees, behavioral studies on solitary bees still largely depend on direct observations, which is very time-consuming.</p> <p>Here, we present a novel automated methodological approach of individually and simultaneously tracking and analyzing foraging and nesting behavior of numerous cavity-nesting solitary bees. The approach consists of monitoring nesting units by video recording and automated analysis of videos by a machine learning based software. This <i>Bee Tracker</i> software consists of four trained deep learning networks to detect bees that enter or leave their nest and to recognize individual IDs on the bees' thorax as well as the IDs of their nests according to their positions in the nesting unit.</p> <p>The software is able to identify each nest of each individual nesting bee, which permits to measure individual-based measures of reproductive success. Moreover, the software quantifies the number of cavities a female enters until it finds its nest as a proxy of nest recognition, and it provides information on the number and duration of foraging trips. By training the software on 8 videos recording 24 nesting females per video, the software achieved a precision of 96% correct measurements of these parameters.</p> <p>The software could be adapted to various experimental setups by training it to an according set of videos. The presented method allows to efficiently collect large amounts of data on cavity-nesting solitary bee species and represents a promising new tool for the monitoring and assessment of behavior and reproductive success under laboratory, semi-field and field conditions.</p>
CVEfixes Dataset: Automatically Collected Vulnerabilities and Their Fixes from Open-Source Software
<p><em>CVEfixes</em> is a comprehensive vulnerability dataset that is automatically collected and curated from Common Vulnerabilities and Exposures (CVE) records in the public <a href="https://nvd.nist.gov/">U.S. National Vulnerability Database (NVD)</a>. The goal is to support data-driven security research based on source code and source code metrics related to fixes for CVEs in the NVD by providing detailed information at different interlinked levels of abstraction, such as the commit-, file-, and method level, as well as the repository- and CVE level.</p> <p>This release, v1.0.8, covers all published CVEs up to 23 July 2024. All open-source projects that were reported in CVE records in the NVD in this time frame _and_ had publicly available git repositories were fetched and considered for the construction of this vulnerability dataset. The dataset is organized as a relational database and covers 12107 vulnerability fixing commits in 4249 open source projects for a total of 11873 CVEs in 272 different Common Weakness Enumeration (CWE) types. The dataset includes the source code before and after changing 51342 files and 138974 functions. The collection took 48 hours with 4 workers (AMD EPYC Genoa-X 9684X).</p> <p>This repository includes the SQL dump of the dataset, as well as the JSON for the CVEs and XML of the CWEs at the time of collection. The complete process has been documented in the paper <em>"CVEfixes: Automated Collection of Vulnerabilities and Their Fixes from Open-Source Software"</em>, which is published in the Proceedings of the 17th International Conference on Predictive Models and Data Analytics in Software Engineering (PROMISE '21). You will find a copy of the paper in the Doc folder. </p> <p><em><strong>Citation and Zenodo links</strong></em></p> <p>Please cite this work by referring to the published paper:</p> <ul> <li>Guru Bhandari, Amara Naseer, and Leon Moonen. 2021. CVEfixes: Automated Collection of Vulnerabilities and Their Fixes from Open-Source Software. In Proceedings of the 17th International Conference on Predictive Models and Data Analytics in Software Engineering (PROMISE '21). ACM, 10 pages. <a href="https://doi.org/10.1145/3475960.3475985">https://doi.org/10.1145/3475960.3475985</a></li> </ul> <pre><code>@inproceedings{bhandari2021:cvefixes, title = {{CVEfixes: Automated Collection of Vulnerabilities and Their Fixes from Open-Source Software}}, booktitle = {{Proceedings of the 17th International Conference on Predictive Models and Data Analytics in Software Engineering (PROMISE '21)}}, author = {Bhandari, Guru and Naseer, Amara and Moonen, Leon}, year = {2021}, pages = {10}, publisher = {{ACM}}, doi = {10.1145/3475960.3475985}, copyright = {Open Access}, isbn = {978-1-4503-8680-7}, language = {en} }</code></pre> <p>The dataset has been released on Zenodo with DOI:<a href="https://doi.org/10.5281/zenodo.4476563">10.5281/zenodo.4476563</a>. The GitHub repository containing the code to automatically collect the dataset can be found at <a href="https://github.com/secureIT-project/CVEfixes">https://github.com/secureIT-project/CVEfixes</a>, released with DOI:<a href="https://doi.org/10.5281/zenodo.5111494">10.5281/zenodo.5111494</a>.</p>
Bee Tracker – an open-source machine-learning based video analysis software for the assessment of nesting and foraging performance of cavity-nesting solitary bees
Open the record for dataset details and reuse information.
Open-source software collaboration network mining dataset
<p>The resulting dataset of the <a href="https://github.com/gotec/git2net">git2net </a>and <a href="https://github.com/wschuell/repo_tools">repo_tools </a>mining process for randomly selected large open-source repositories.</p>
Mandelbugs in Open-Source Software
<p>This dataset contains a list bugs from four open-source projects (the Linux kernel, the MySQL DBMS, the Apache HTTPD web server, and the Apache AXIS WS framework). The bugs have been classified into Mandelbugs, Bohrbugs, or Aging-Related Bugs, by analyzing the conditions that exercise the bug (i.e., the "fault trigger"). This classification is useful to get insights into bugs and failures that can occur in OSS projects, and to tune testing and fault-tolerance strategies according to the distribution of bug types in a project.</p> <p>The dataset contains an ARFF file for each subsystem of the four open-source projects. Each row of the ARFF file contains:</p> <p>- An IDs of the bug, which can be used to retrieve more information about the bug from the issue tracker of the project;</p> <p>- A string that represents the class of the bug (BOH = Bohrbug; NAM = Mandelbug; ARB = Aging-Related Bug; UNK = Unknown class);</p> <p>- A string that represents the sub-class of the bug (for Bohrbugs, the sub-class is not available; the subclasses for Mandelbugs are LAG, ENV, TIM, SEQ; the subclasses for Aging-Related bugs are MEM, STO, LOG, NUM, TOT).<br> </p>
Artifact for "Inside Bug Report Templates: An Empirical Study on Bug Report Templates in Open-Source Software"
<p>This is the artifact for the paper "Inside Bug Report Templates: An Empirical Study on Bug Report Templates in Open-Source Software".</p> <p><strong>What the artifact does:</strong><br>1) a questionnaire that we used for our online survey (PDF);<br>2) the valid responses of our online survey (CSV).</p> <p>3) the code of preprocessing (.py).</p> <p>4) the dataset of preprocessing and labeling (CSV).</p>
SoK: Taxonomy of Attacks on Open-Source Software Supply Chains - Visualization Tool Screenshots & Selected Papers
<p>This artifact complements the paper "SoK: Taxonomy of Attacks on Open-Source Software Supply Chains", submitted at IEEE S&P 2023.</p> <p>The papers selected during the Systematic Literature Review (SLR) are presented in the CSV file.</p> <p>This screenshots display the main features of the visualization tool that allows to explore the taxonomy of attacks on OSS supply chains, as well as the related safeguards and the selected references.</p>
Open-Source Software Product Line Extraction Processes: the ArgoUML-SPL and Phaser Cases
<p>Collection of datasets and analysis scripts supporting the information provided in the text.</p> <p>There are two compressed files, one for the ArgoUML data and one for the Phaser data. Each compressed file contains a README describing important information.</p>
Open-source Software Governance Documentation Dataset on GitHub
<p>This dataset contains 710 GitHub-hosted OSS projects, which contain a governance file in the root directory of the project. It also contains commits, issues, and comments on each project.</p>
Replication package for "Blended Modeling in Commercial and Open-source Model-Driven Software Engineering Tools: A Systematic Study"
<p>Replication package for the paper <em>Blended Modeling in Commercial and Open-source Model-Driven Software Engineering Tools: A Systematic Study</em>.</p> <p>Protocol</p> <ul> <li><code>/01-protocol/protocol.pdf</code></li> </ul> <p>Data & analysis scripts</p> <p>This replication package is structured as follows:</p> <ul> <li><code>/02-search</code> - Detailed data on the <code>/academic</code> and <code>/grey literature</code> search.</li> <li><code>/03-tools</code> - Identified tools and inclusion/exclusion decisions.</li> <li><code>/04-classification_schema</code> - Classification framework and the corresponding data extraction form.</li> <li><code>/05-data</code> - Clean data in a processable form.</li> <li><code>/06-analysis</code> - Analysis scripts and results.</li> </ul>
Open-source release of tensor-network software
<p>This is a package<sup><a href="https://github.com/aspects-quantum/TFlucn_tedopa#user-content-fn-SBmodel-85d3b1b42ae4f41239f8975ec68008b2">1</a></sup> for calculating FLUCTUATIONS of heat transfer in the Spin-Boson model<sup><a href="https://github.com/aspects-quantum/TFlucn_tedopa#user-content-fn-PRX2020-85d3b1b42ae4f41239f8975ec68008b2">2</a></sup> using the <strong>Time Evolving Density matrices using Orthogonal Polynomial Algorithm (<em>TEDOPA</em>)</strong><sup><a href="https://github.com/aspects-quantum/TFlucn_tedopa#user-content-fn-Prior2010-85d3b1b42ae4f41239f8975ec68008b2">3</a></sup><sup><a href="https://github.com/aspects-quantum/TFlucn_tedopa#user-content-fn-Chin2010-85d3b1b42ae4f41239f8975ec68008b2">4</a></sup>.</p> <p>We employ the <strong>Thermofield-based chain-mapping approach for open quantum systems</strong><sup><a href="https://github.com/aspects-quantum/TFlucn_tedopa#user-content-fn-PRA2015-85d3b1b42ae4f41239f8975ec68008b2">5</a></sup> that enables us to use a vacuum initial matrix product state (pure) for the environment instead of a thermal state (mixed), thereby speeding up the computation greatly.</p> <p>In this package, we use the ITensor library<sup><a href="https://github.com/aspects-quantum/TFlucn_tedopa#user-content-fn-Itensor-85d3b1b42ae4f41239f8975ec68008b2">6</a></sup> in Julia for tensor network manipulations. </p> <p>This package uses <strong>julia = "1.8.2"</strong> version.</p>
Replication Package for "Classifying Open-Source Pre-Trained Models and Datasets for Software Engineering"
<p>The replication package for the short paper titled 'Classifying Open-Source Pre-Trained Models and Datasets for Software Engineering' is provided. It includes a README file and accompanying scripts with comprehensive instructions to facilitate the replication of the analysis presented in the paper.</p>
3D Lung Reconstructions Using Open-source Software for Lung Cancer Surgery
ClinicalTrials.gov study NCT06132607. IPD Sharing: NO. Countries: 1. Publications: 1.
Accuracy of Open-source Software in Semi-automatic 3-Dimensional Reconstruction of the Mandible
ClinicalTrials.gov study NCT05055986. IPD Sharing: YES. Countries: 1. Publications: 4.
Supplementary Website, Data, and Scripts for the Paper "Hierarchical and Hybrid Organizational Structures in Open-Source Software Projects: A Longitudinal Study"
<p>Supplementary website containing result plots and data, anonymized raw data, and scripts used to produce the results of the paper "Hierarchical and Hybrid Organizational Structures in Open-Source Software Projects: A Longitudinal Study".</p>
Data from "SynBot: An open-source image analysis software for automated quantification of synapses"
<p>Primary image datasets and associated tables from the paper "SynBot: An open-source image analysis software for automated quantification of synapses". </p>
Classifying Open-Source Pre-Trained Models and Datasets for Software Engineering
Open the record for dataset details and reuse information.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.