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ShareScore release 0.9.0
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7 results for “oral Metagenome”
Large-scale metagenomic analysis of oral microbiomes reveals markers for autism spectrum disorders, MetaPhlAn 3 profiles
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The Effect of Probiotic Lactobacillus Reuteri Prodentis Consumption on Gingival Crevicular Fluid Inflammatory Response and Metagenomic Profiles of Oral Microbiome in Orthodontic Patients.
ClinicalTrials.gov study NCT04847960. IPD Sharing: Not stated. Countries: 1. Publications: 24.
Integrated Metagenomics and Transcriptomics Analysis Reveals Pathways Associated with Oral Periapical Lesions Formation and Progression
GEO Series GSE299006. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
Metagenomic analysis of Mesolithic chewed pitch reveals poor oral health among stone age individuals
<p>Prehistoric chewed pitch has proven to be a useful source of ancient DNA, both from humans and their microbiomes. Here we present the metagenomic analysis of three pieces of chewed pitch from Huseby Klev, Sweden, that were dated to 9,890–9,540 before present. The metagenomic profle exposes a Mesolithic oral microbiome that includes opportunistic oral pathogens. We compared the data with healthy and dysbiotic microbiome datasets and we identifed increased abundance of periodontitisassociated microbes. In addition, trained machine learning models predicted dysbiosis with 70–80% probability. Moreover, we identifed DNA sequences from eukaryotic species such as red fox, hazelnut, red deer and apple. Our results indicate a case of poor oral health during the Scandinavian Mesolithic, and show that pitch pieces have the potential to provide information on material use, diet and oral health.</p>
Metagenomic Analysis of the Oral Microbiome in Patients With Oral Lichen Planus: A Pilot Study in the Turkish Population
ClinicalTrials.gov study NCT07137156. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Oral Metagenomic Biomarkers in Rheumatoid Arthritis
ClinicalTrials.gov study NCT02544334. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
SpaceX Inspiration4 Oral, Nasal, and Skin Metagenomic and Metatranscriptomic Microbial Swabs
The SpaceX Inspiration4 mission was a 3-day mission with four private astronauts to low Earth orbit that occurred in September 2021. The crew collected biospecimen samples before, during, and after flight. One of these biospecimen collections included oral, nasal, and skin microbial swabs collected from ten locations (oral, nasal cavity, post-auricular, axillary vault, volar forearm, occiput, umbilicus, gluteal crease, glabella, and toe web space). Skin swabs were first dipped in nuclease-free water before swabbing each region for 30 seconds. Oral and nasal swabs did not include this swab-wetting step. Nuclease-free water samples were sequenced as controls. Swabs were collected at three pre-flight timespoints (L-92, L-44, L-3), two in-flight timepoints (flight day 2 (FD2), and flight day 3 (FD3)), and three post-flight timepoints (R+1, R+45, R+82). Swabs were stored in 400uL of Zymo Research DNA/RNA Shield at 4C until nucleic acid extraction. DNA and RNA were extracted from the same swab to generate metagenomic and metatranscriptomic profiles.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.