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41 results for “organic layer”
Overwintering Fires from 2009-2010 Burns near Fairbanks, Alaska: Residual Soil Organic Layer Depth, Burn Depth and Thaw Depth Collected 2023
This dataset contains data from adjacent overwintering and single-season burn sites. For the overwintering fires, we targeted locations that had burned in the summers of 2009, smouldered through the winter months, and reignited in 2010. Adjacent to these overwintering sites, we identified single-season burn sites from within portions of the 2009 fires that were unaffected by overwintering. A total of seven overwintering fire sites and four single-season fire sites were sampled. Within each site, three plots were established. Data inlcudes within plot measurments of post-fire seedling composition and density, residual SOL, burn depth estimated by black spruce adventitious roots, thaw depth, and pre-fire tree species composition and estimates of combustion. This is one of three packages from this project; this one contains the soils data.
Data on ground ice, organic carbon and soluble cations in tundra permafrost and active-layer soils near Lac de Gras in the Slave Geological Province, N.W.T., Canada
<p>Data and computer code for producing figures for the manuscript:</p> <p>Subedi, R., Kokelj, S. V., and Gruber, S.: Ground ice, organic carbon and soluble cations <br> in tundra permafrost soils and sediments near a Laurentide ice divide in the Slave <br> Geological Province, N.W.T., Canada. The Cryosphere, accepted for publication in October 2020. </p> <p>Discussion paper and final version: https://doi.org/10.5194/tc-2020-33</p> <p> </p> <p>==========================================================================================<br> CONTENT OF DIRECTORIES<br> ==========================================================================================<br> -– data [input data to produce plots]<br> |–– BoreholesMeta.csv<br> |–– brackets_photos_ice.csv<br> |–– brackets_photos_thawed.csv<br> |–– Lac_de_Gras_permafrost_20200612.csv<br> |–– NordicanaD<br> <br> |–– ds_000582159 [authoritative copy at doi: 10.5885/45558XD-EBDE74B80CE146C6]<br> |–– Cored_Drill_TCR.csv<br> |–– Cored_Drill_TCR.csv_ReadMe.txt<br> <br> |–– ds_000582163 [authoritative copy at doi: 10.5885/45558XD-EBDE74B80CE146C6]<br> |–– Cored_Drill_Logs.csv_ReadMe.txt<br> |–– Cored_Drill_Logs.csv</p> <p>–– plot [R scripts write plots into this subdirectory]</p> <p>–– src [R scripts to generate plots]<br> |–– Combined_Plots.R [produces Figures 3–6]<br> |–– Eskers.R [helper function called by Combined_Plots.R]<br> |–– Organics.R [helper function called by Combined_Plots.R]<br> |–– plot_boreholes_DD_single.R [produces Figures S3]<br> |–– plot_boreholes_DD.R [produces raw Figure S2 for further graphic processing]<br> |–– Till.R [helper function called by Combined_Plots.R]<br> |–– Valley.R [helper function called by Combined_Plots.R]</p> <p><br> ==========================================================================================<br> RUNNING SCRIPTS<br> ==========================================================================================</p> <p>Adjust the variable 'path' in these scrips, then run: <br> Combined_Plots.R<br> plot_boreholes_DD_single.R<br> plot_boreholes_DD.R </p> <p>Tested with R version 3.6.3 (2020-02-29) -- "Holding the Windsock"</p> <p> </p> <p>==========================================================================================<br> REFRERENCE<br> ==========================================================================================<br> Please note that the data contained in data/NordicanaD is published as Gruber et al. (2018)<br> and only included here for convenience. The full reference for the authoritative copy is: <br> <br> Gruber, S., Brown, N., Stewart-Jones, E., Karunaratne, K., Riddick, J., Peart, C., <br> Subedi, R., Kokelj, S. 2018. Drill logs, visible ice content and core photos from 2015 <br> surficial drilling in the Canadian Shield tundra near Lac de Gras, Northwest Territories, <br> Canada, v. 1.0 (2015-2015). Nordicana D38, doi: 10.5885/45558XD-EBDE74B80CE146C6. <br> http://www.cen.ulaval.ca/nordicanad/dpage.aspx?doi=45558XD-EBDE74B80CE146C6 </p>
Organic Matter, Geochemical, Visible Spectrocolorimetric Properties, Radiocesium Properties, and Grain Size of Potential Source Material, Target Sediment Core Layers and Laboratory Mixtures for Conducting Sediment Fingerprinting Approaches in the Mano Dam Reservoir (Hayama Lake) Catchment, Fukushima Prefecture, Japan
<p>The current dataset was compiled to study sediment fingerprintings practices, i.e tracer selection and contribution modelling. Organic matter, elemental geochemistry, visible difuse spectrocolorimetric properties, radiocesium properties, and grain size were analysed were analysed in potential source material that may supply sediment to coastal rivers, here the upper part of the Mano river, draining the main Fukushima radioactive pollution plume (Japan). Four potential soil source materials (<em>n</em> = 68) were considered: undecontaminated cropland (<em>n</em> = 24), as non-decontaminated soil before the application of local decontamination policies, remediated cropland (<em>n</em> = 10), as decontaminated soil after the application of local decontamination policies, forest soils (n = 24) and subsurface material originating from channel bank collapse or landslides (<em>n</em> = 10; referred to as subsoil). A sediment core was collected in the Mano Dam lake (Hayama lake) on the 6th June 2021 and was sectionned into 1-cm layers (<em>n</em> = 38). Laboratory mixtures (<em>n</em> = 27) were made to assess different contribution levels from the sources.</p> <p>The current dataset comprises four .csv files including data and metadata information and their respective descriptions of variables. The data set is composed of soil samples, sediment core layer and laboratory mixtures. Laboratory mixtures were prepared to provide a dataset to calibrate/validate un-mixing models implemented to address this research question and analysed in the same conditions and using the same equipment as the source/target material.</p> <p>Recommended encoding format: <strong>latin1</strong></p>
Marine plastics alter the organic matter composition of the air-sea boundary layer, with influences on CO2 exchange: a large-scale analysis method to explore future ocean scenarios
<p>Microplastics are substrates for microbial activity and can influence biomass production. This has potentially important implications in the sea-surface microlayer, the marine boundary layer that controls gas exchange with the atmosphere and where biologically produced organic compounds can accumulate. In the present study, we used six large scale mesocosms to simulate future ocean scenarios of high plastic concentration. Each mesocosm was filled with 3 m3 of seawater from the oligotrophic Sea of Crete, in the Eastern Mediterranean Sea. A known amount of standard polystyrene microbeads of 30 μm diameter was added to three replicate mesocosms, while maintaining the remaining three as plastic-free controls. Over the course of a 12-day experiment, we explored microbial organic matter dynamics in the sea-surface microlayer in the presence and absence of microplastic contamination of the underlying water. Our study shows that microplastics increased both biomass production and enrichment of carbohydrate-like and proteinaceous marine gel compounds in the sea-surface microlayer. Importantly, this resulted in a 3 % reduction in the concentration of dissolved CO2 in the underlying water. This reduction was associated to both direct and indirect impacts of microplastic pollution on the uptake of CO2 within the marine carbon cycle, by modifying the biogenic composition of the sea's boundary layer with the atmosphere.</p>
Mixed ionic-electronic conduction in Ruddlesden-Popper and Dion-Jacobson layered hybrid perovskites with aromatic organic spacers
<p>Characterisation dataset for “Mixed ionic-electronic conduction in Ruddlesden-Popper and Dion-Jacobson layered hybrid perovskites with aromatic organic spacers”, DOI:10.1039/d4tc01010h. Data provided as *.xlsx, *.csv, *tif and *.png files.</p> <p> </p> <p> </p> <p> </p>
Post-fire succession in Delta Junction burns: Measurements of post-fire organic layer depth in 1987, 1990, 1994, and 1999 burns
This dataset contains soil organic layer depth measurements taken during summer 2008 in 4 burns located near Delta Junction (1987, 1994, 1999) and Tok (1990). These data can be found in Shenoy et al. 2011.
Post-fire succession in 1994 Hajdukovich Creek burn: Measurements of soil organic layer depth
This dataset contains soil organic layer depth measurements collected in July 2009 from the 1994 Hajdukovich Creek Burn.
Data from: Turbulence organization and mean profile shapes in the stably stratified boundary layer: Zones of uniform momentum and air temperature
Open the record for dataset details and reuse information.
Organic layer data from burned black spruce stands for the effects of variations in post-fire organic layer thickness studies in the Delta Junction region, 1995-2003
This database contains data on the total depth of the surface organic layer remaining after fire for the study plots used in an analysis of variations in the depths of surface organic layers found in burned and unburned black spruce stands, and the effects of variations in depth of burning on soil temperature and moisture, and organic layer carbon stocks. Data for the overall study were collected between 1995 and 2003 by Eric Kasischke (University of Maryland), Kathy O?Neill (Duke University), and Jill Johnstone (University of Alaska Fairbanks). Sites were located in burned black spruce stands within the perimeters of three recent fires (1987, 1994, and 1999), unburned black spruce stands adjacent to the burned stands, and within one black spruce stand that burned in 1956. The three fires were: (a) the 1987 Granite Creek fire located 15 km to the east of Delta Junction, Alaska USA, bordering the Alaska Highway on the North and Jarvis Creek on the south; the 1994 Hajdukovich Creek fire located 45 km southeast of Delta Junction Alaska, USA, bordering the Alaska Highway to the North and the Gerstle River to the West, and the 1999 Donnelly Flats fire, located 8 km south of Delta Junction, bordering Jarvis Creek to the east and the Richardson Highway on the west. Data that were collected and are in databases associated with this project include: (1) organic layer depths in burned stands; (2) organic layer depths in unburned stands; (3) basal diameters of overstory trees in unburned stands and distance measures that can be used to estimate stand density; (4) mineral soil temperature and moisture data in burned stands; (5) mineral soil temperature and moisture data in unburned stands; and (6) bulk density and percent carbon data from different organic layers in unburned stands.
Mineral soil moisture and temperature data from unburned stands used in the effects of variations in post-fire organic layer thickness studies in the Delta Junction region, 1995-2003
This database contains measurements of mineral soil temperature and moisture collected in unburned stands as part of an analysis of variations in the depths of surface organic layers found in burned and unburned black spruce stands, and the effects of variations in depth of burning on soil temperature and moisture, and organic layer carbon stocks. Data for the overall study were collected between 1995 and 2003 by Eric Kasischke (University of Maryland), Kathy O'Neill (Duke University), and Jill Johnstone (University of Alaska Fairbanks). Sites were located in burned black spruce stands within the perimeters of three recent fires (1987, 1994, and 1999), unburned black spruce stands adjacent to the burned stands, and within one black spruce stand that burned in 1956. The three fires were: (a) the 1987 Granite Creek fire located 15 km to the east of Delta Junction, Alaska USA, bordering the Alaska Highway on the North and Jarvis Creek on the south; the 1994 Hajdukovich Creek fire located 45 km southeast of Delta Junction Alaska, USA, bordering the Alaska Highway to the North and the Gerstle River to the West, and the 1999 Donnelly Flats fire, located 8 km south of Delta Junction, bordering Jarvis Creek to the east and the Richardson Highway on the west. Data that were collected and are in databases associated with this project include:; (1) organic layer depths in burned stands; (2) organic layer depths in unburned stands; (3) basal diameters of overstory trees in unburned stands and distance measures that can be used to estimate stand density; (4) mineral soil temperature and moisture data in burned stands; (5) mineral soil temperature and moisture data in unburned stands; and (6) bulk density and percent carbon data from different organic layers in unburned stands.
Data to estimate stand density and average basal diameter from unburned black spruce stands used in the effects of variations in post-fire organic layer thickness studies in the Delta Junction region, 1995-2003
This database contains data on basal diameter and distances from a center point to the trees sampled, which is used to estimate stand density in unburned black spruce plots used in an analysis of variations in the depths of surface organic layers found in burned and unburned black spruce stands, and the effects of variations in depth of burning on soil temperature and moisture, and organic layer carbon stocks. Data for the overall study were collected between 1995 and 2003 by Eric Kasischke (University of Maryland), Kathy O?Neill (Duke University), and Jill Johnstone (University of Alaska Fairbanks). Sites were located in burned black spruce stands within the perimeters of three recent fires (1987, 1994, and 1999), unburned black spruce stands adjacent to the burned stands, and within one black spruce stand that burned in 1956. The three fires were: (a) the 1987 Granite Creek fire located 15 km to the east of Delta Junction, Alaska USA, bordering the Alaska Highway on the North and Jarvis Creek on the south; the 1994 Hajdukovich Creek fire located 45 km southeast of Delta Junction Alaska, USA, bordering the Alaska Highway to the North and the Gerstle River to the West, and the 1999 Donnelly Flats fire, located 8 km south of Delta Junction, bordering Jarvis Creek to the east and the Richardson Highway on the west. Data that were collected and are in databases associated with this project include: (1) organic layer depths in burned stands; (2) organic layer depths in unburned stands; (3) basal diameters of overstory trees in unburned stands and distance measures that can be used to estimate stand density; (4) mineral soil temperature and moisture data in burned stands; (5) mineral soil temperature and moisture data in unburned stands; and (6) bulk density and percent carbon data from different organic layers in unburned stands.
Organic layer data from unburned black spruce stands used in the effects of variations in post-fire organic layer thickness studies in the Delta Junction region, 1995-2003
This database contains data on the total depth of the surface organic layer for the unburned black spruce plots used in an analysis of variations in the depths of surface organic layers found in burned and unburned black spruce stands, and the effects of variations in depth of burning on soil temperature and moisture, and organic layer carbon stocks. Data for the overall study were collected between 1995 and 2003 by Eric Kasischke (University of Maryland), Kathy O?Neill (Duke University), and Jill Johnstone (University of Alaska Fairbanks). Sites were located in burned black spruce stands within the perimeters of three recent fires (1987, 1994, and 1999), unburned black spruce stands adjacent to the burned stands, and within one black spruce stand that burned in 1956. The three fires were: (a) the 1987 Granite Creek fire located 15 km to the east of Delta Junction, Alaska USA, bordering the Alaska Highway on the North and Jarvis Creek on the south; the 1994 Hajdukovich Creek fire located 45 km southeast of Delta Junction Alaska, USA, bordering the Alaska Highway to the North and the Gerstle River to the West, and the 1999 Donnelly Flats fire, located 8 km south of Delta Junction, bordering Jarvis Creek to the east and the Richardson Highway on the west. Data that were collected and are in databases associated with this project include: (1) latitude and longitude of all study sites; (2) organic layer depths in burned stands; (3) organic layer depths in unburned stands; (4) basal diameters of overstory trees in unburned stands and distance measures that can be used to estimate stand density; (5) mineral soil temperature and moisture data in burned stands; (6) mineral soil temperature and moisture data in unburned stands; and (7) bulk density and percent carbon data from different organic layers in unburned stands.
Bulk density and percent carbon from surface organic layers in unburned black spruce stands used in the effects of variations in post-fire organic layer thickness studies in the Delta Junction region, 1995-2003
This database contains data on bulk density and percent carbon from surface organic layers in two unburned black spruce stands adjacent to the 1994 burn in the Delta Junction region. These data were used in an analysis of variations in the depths of surface organic layers found in burned and unburned black spruce stands, and the effects of variations in depth of burning on soil temperature and moisture, and organic layer carbon stocks. Data for the overall study were collected between 1995 and 2003 by Eric Kasischke (University of Maryland), Kathy O?Neill (Duke University), and Jill Johnstone (University of Alaska Fairbanks). Sites were located in burned black spruce stands within the perimeters of three recent fires (1987, 1994, and 1999), unburned black spruce stands adjacent to the burned stands, and within one black spruce stand that burned in 1956. The three fires were: (a) the 1987 Granite Creek fire located 15 km to the east of Delta Junction, Alaska USA, bordering the Alaska Highway on the North and Jarvis Creek on the south; the 1994 Hajdukovich Creek fire located 45 km southeast of Delta Junction Alaska, USA, bordering the Alaska Highway to the North and the Gerstle River to the West, and the 1999 Donnelly Flats fire, located 8 km south of Delta Junction, bordering Jarvis Creek to the east and the Richardson Highway on the west. Data that were collected and are in databases associated with this project include: (1) organic layer depths in burned stands; (2) organic layer depths in unburned stands; (3) basal diameters of overstory trees in unburned stands and distance measures that can be used to estimate stand density; (4) mineral soil temperature and moisture data in burned stands; (5) mineral soil temperature and moisture data in unburned stands; and (6) bulk density and percent carbon data from different organic layers in unburned stands.
Mineral soil moisture and temperature data from burned stands used in the effects of variations in post-fire organic layer thickness studies in the Delta Junction region, 1995-2003
This database contains measurements of mineral soil temperature and moisture collected in burned stands as part of an analysis of variations in the depths of surface organic layers found in burned and unburned black spruce stands, and the effects of variations in depth of burning on soil temperature and moisture, and organic layer carbon stocks. Data for the overall study were collected between 1995 and 2003 by Eric Kasischke (University of Maryland), Kathy O?Neill (Duke University), and Jill Johnstone (University of Alaska Fairbanks). Sites were located in burned black spruce stands within the perimeters of three recent fires (1987, 1994, and 1999), unburned black spruce stands adjacent to the burned stands, and within one black spruce stand that burned in 1956. The three fires were: (a) the 1987 Granite Creek fire located 15 km to the east of Delta Junction, Alaska USA, bordering the Alaska Highway on the North and Jarvis Creek on the south; the 1994 Hajdukovich Creek fire located 45 km southeast of Delta Junction Alaska, USA, bordering the Alaska Highway to the North and the Gerstle River to the West, and the 1999 Donnelly Flats fire, located 8 km south of Delta Junction, bordering Jarvis Creek to the east and the Richardson Highway on the west. Data that were collected and are in databases associated with this project include: (1) organic layer depths in burned stands; (2) organic layer depths in unburned stands; (3) basal diameters of overstory trees in unburned stands and distance measures that can be used to estimate stand density; (4) mineral soil temperature and moisture data in burned stands; (5) mineral soil temperature and moisture data in unburned stands; and (6) bulk density and percent carbon data from different organic layers in unburned stands.
Organic layer thickness measurements from burned and unburned black spruce forests in Alaska collected between 1994 and 2012
This dataset contains organic layer thickness measurements collected in mature burned and unburned black spruce stands located throughout interior Alaska. These data were collected as part of a number of studies between 1994 and 2012 in order to quantify variations in organic layer thickness and estimate organic layer carbon in burned and unburned black spruce stands. Data were collected in sites located on a number of topographic positions, and collected in sites that burned during different time periods during the fire season. Measurements that were collected at most sites included either the total thickness of the surface organic layer, or the thickness of individual layers within the organic layer. These layers include: moss (including green and brown), fibric soil, mesic soil, humic soil, and char. Beginning in 2005, data on the height of adventitious roots above mineral soil were collected and used to estimate the pre-burn organic layer thickness.
Estimated Age of Carbon within the Soil Organic Layer for Murphy Dome study site in 2013
This file contains radiocarbon data used to estimate age of the soil organic layer for black spruce and Alaska paper birch forest in the Murphy Dome fire scar near Fairbanks, AK. All information was collected in summer 2013 and subsequently processed and analyzed in the laboratory.
Interior Alaska managed sites: soil organic layer and mineral soil nutrient concentrations and additional characteristics measured one time in either summer 2012 or 2013
This dataset contains soil organic layer and mineral soil depth, C and N concentrations, and other soil characteristics collected at all managed and adjacent unmanaged study sites.
Interior Alaska managed sites: soil organic layer depth and thaw depth measured one time in either summer 2012 or 2013
This dataset contains estimates of soil organic layer depth and thaw depth along transects measured at a suite of managed and unmanaged areas in interior Alaska in summers 2012 and 2013.
Organic layer thickness: Wickersham fire sites (1971 - 2004)
In June of 1971, the Wickersham fire burned 6313 ha in an open black spruce forest underlain with permafrost and provided an opportunity to study fire and fireline effects on the rate and patterns of permafrost, soil, and vegetation recovery. When wildfire burns through a northern black spruce forest the degree of soil organic layer consumption greatly influences the post-fire community characteristics. The construction of firelines with heavy machinery involves the complete removal of vegetation and the soil organic layer down to mineral soil and likewise affects the community characteristics after fire and fire suppression. Reduction in organic layer thickness and the subsequent loss of thermal insulation has been shown to cause increased soil temperatures and increased depth of thaw of the active layer. This long-term study is a comparison between the organic layer thickness on firelines, burned and unburned open black spruce forests underlain by ice rich permafrost.
Marine vesicles: one more layer of complexity in the dissolved organic fraction
<p>These data include the genome of the <em>Vibrio kanaloae</em> strain, which was isolated in pure culture from a seawater sample collected on May 31, 2022, from Cape Huertas (Alicante, Spain). The genome was sequenced using PacBio HiFi long reads. Additionally, reads sequences from the extracellular vesicles (EVs) in the 20% OptiPrep fraction were isolated from the <em>Vibrio kanaloae</em> culture incubated in dialysis tubing cellulose membranes (Sigma-Aldrich, ref: D9652-100FT, width: 33 mm, 14 kDa). These membranes were immersed in an aquarium filled with natural seawater collected on December 9, 2022, from Cape Huertas (Mediterranean Sea, Alicante) and incubated at room temperature (approximately 18–20°C) for 1 week.</p> <p>EVs_20_rep1_AQ_1C_culture_1 represents reads of the EVs 20% fraction isolated from the <em>Vibrio kanaloae strain 1C</em> aquarium culture, with rep1 and rep2 denoting the first and second replicates, respectively.</p> <p>The EV reads were analyzed to facilitate a comprehensive evaluation of the representation and distribution of the mapped reads across the <em>Vibrio</em> genome.</p> <p>This mapping approach enables the discernment of whether the mapped reads exhibit a uniform distribution, characteristic of a random DNA release process, or a non-uniform distribution, indicating a proclivity for alignment with specific genetic loci within the <em>Vibrio</em> genome. This distinction is crucial for unraveling the underlying intricacies governing DNA release and transfer in <em>Vibrio kanaloae</em>, thereby advancing our understanding of these complex processes.</p>
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OpenNeuro
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