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106 results for “organic nitrogen”
Georgia Salt Marsh: Soil Organic Carbon, Nitrogen, Bulk Density, Moisture, and Texture
As part of project predicting soil carbon at depth from that found at the surface using remote sensing, 28 soil cores were taken from six salt marshes along the Georgia coastline. Cores were taken as deep as possible (25 – 165 cm) and sectioned into 5 cm depths. Soils were analyzed for organic carbon (SOC), total nitrogen (N), bulk density (BD), and particle size (by horizon). Stable carbon isotopes were obtained in three marshes on Sapelo Island; a subset was also analyzed for radiocarbon.
Carbon and nitrogen content and stable isotope compositions from particulate organic matter samples from lagoon, river, and open ocean sites along the Alaska Beaufort Sea coast, 2018-ongoing
Multiple water types (river, lagoon, ocean) from the North Slope of Alaska and nearshore Beaufort Sea are sampled seasonally by the Beaufort Lagoon Ecosystems LTER (BLE LTER) Core Program to investigate biogeochemical linkages between terrestrial, lagoon, and open ocean ecosystems. Water samples are collected during full ice cover (April), ice break-up (mid-June to early July), and open water (late July and August) periods, and analyzed for particulate organic carbon (POC) and particulate organic nitrogen (PON) content and stable isotopic composition.
Carbon and nitrogen content and stable isotope composition from sediment organic matter from lagoon sites along the Alaska Beaufort Sea coast, 2018-ongoing
Multiple sediment samples from lagoons along the nearshore Beaufort Sea are sampled seasonally by the Beaufort Lagoon Ecosystems LTER (BLE LTER) Core Program to investigate biogeochemical linkages between terrestrial, lagoon, and open ocean ecosystems. Sediment samples are collected during full ice cover (April), ice break-up (mid-June to early July), and open water (late July and August) periods, and analyzed for carbon and nitrogen content and stable isotopic composition.
Dissolved organic carbon (DOC) and total dissolved nitrogen (TDN) from river, lagoon, and open ocean sites along the Alaska Beaufort Sea coast, 2018-ongoing
Multiple water types (river, lagoon, ocean) from the North Slope of Alaska and nearshore Beaufort Sea are sampled seasonally by the Beaufort Lagoon Ecosystems LTER (BLE LTER) Core Program to investigate biogeochemical linkages between terrestrial, lagoon, and open ocean ecosystems. Water samples are collected during full ice cover (April), ice break-up (mid-June to early July), and open water (late July and August) periods and analyzed for dissolved organic carbon and total dissolved nitrogen content.
Total dissolved nitrogen (TDN), dissolved organic carbon (DOC), radiocarbon (14C-DOC), and stable carbon (13C-DOC) of surface waters from the Canning River watershed, 2019 and 2021
Sites along the Canning River mainstem and contributing streams near the Kavik River Camp, Alaska, were visited to track changes in stream and river total dissolved nitrogen (TDN) concentration, dissolved organic carbon (DOC) concentration, and the stable carbon (13C) and radiocarbon (14C) isotopic composition of DOC across transitions between the Brooks Range, Brooks foothills, and Arctic Coastal Plain. The dataset also includes water samples collected from lakes, springs, groundwater, and streams and rivers outside the Canning River watershed. Water samples were collected in late April and early August 2019 and in late July and early August 2021. Data include measurements of individual samples for TDN (milligrams nitrogen per liter), DOC (milligrams carbon per liter), carbon-13 of DOC (reported as delta-13C, per mil), carbon-14 of DOC (reported as fraction modern), and analytical error in the fraction modern values. Additional water chemistry data for these samples can be found in Koch et al. (2024). References: Koch, J. C., Connolly, C. T., Repasch, M., Best, H. R., Couvillion, C. S., Hunt, A. (2024). [Dataset] Hydrochemistry and age date tracers from springs, streams, and rivers in the Arctic National Wildlife Refuge, 2019-2022, U.S. Geological Survey data release, https://doi.org/10.5066/P95CXJIT.
Comparing vertical accretion, organic carbon (C) sequestration, and nitrogen burial between a natural, never diked tidal salt marsh and a hydrologically restored tidal salt marsh on Sapelo Island, Georgia.
Restoration of tidal marshes throughout the 20th century have attempted to bring back important functions of natural tidal systems. In this study, vertical accretion, organic carbon (C) sequestration, and nitrogen burial were compared between a natural, never diked tidal salt marsh and a hydrologically restored tidal salt marsh on Sapelo Island, Georgia to examine the impacts of restoration years later. On Sapelo Island there are two marshes near the University of Georgia Marine Institute, one of which is a natural marsh, and one of which is a restored marsh. The restored marsh had been diked in 1948, and the dike was breached, allowing for the marsh to be restored, in 1956. Soil cores were collected from both marshes, and the sediments were analysed for Nitrogen and Carbon concentrations and bulk density. This analysis was used to determine accretion rates for the two marshes as well as changes in the restored marsh since the dike was breached. Nitrogen burial, carbon sequestration, and soil accretion in the restored marsh as compared to the natural marsh were the focus of this study.
Organic and Inorganic Nitrogen Uptake by Sarracenia Purpurea at Harvard Forest and Fort Albany ON 2007
The nitrogen-limited carnivorous pitcher plant Sarracenia purpurea and its associated detritus-based food web is a model system for studying plant nutrient dynamics. We tested if S. purpurea can directly take up intact amino acids and compared uptake of organic and inorganic forms of nitrogen (N) across a gradient of N deposition. At sites in Canada and the United States, individual pitchers with complete or incomplete food webs were fed U-13C-15N-glycine, U-13C-15N-phenylalanine and 15NH415NO3 individually and in mixture. Plants took up intact amino acids. Acquisition of each N form provided in isolation exceeded uptake of the same form in mixture. At the high deposition site, uptake of 15N from amino acids was higher than uptake of 15N from inorganic nitrogen. At the low deposition site, uptake of 15N from all three forms of N were similar. Completeness of the associated food web had no effect on 15N uptake. By taking up intact amino acids, Sarracenia purpurea can short-circuit the inorganic N cycle, thus minimizing potential bottlenecks in N availability that result from the plant’s reliance for nitrogen mineralization on a seasonally reconstructed food web operating on infrequent and irregular prey capture.
Particulate organic carbon and particulate organic nitrogen concentrations and stable isotope composition of seawater sampled during the Antarctic Circumnavigation Expedition (ACE) during the Austral Summer of 2016/2017.
<p><strong>Dataset abstract</strong></p> <p>This dataset contains particulate organic carbon and particulate organic nitrogen concentrations and stable isotope composition (delta 13C and delta 15N) sampled during the Antarctic Circumnavigation Expedition (ACE) Leg 1-3. Water samples were collected from the underway seawater supply every 3 hours, filtered onto pre-combusted glass fibre filters, acidified to remove inorganic compounds and analysed for both elements on the same filter using an elemental analyser. These samples provide an estimate of the organic carbon and organic nitrogen concentration and carbon and nitrogen stable isotope composition of living and detrital particles > 0.7 micrometres in size.</p> <p><strong>Dataset contents</strong></p> <ul> <li>README.txt, metatdata, text</li> <li>data_file_header.txt, metadata, text</li> <li>ace_uw_poc_pon_blanks_20200512CURRSGCMR.csv, data file, comma-separated values</li> <li>ace_uw_poc_pon_20200512CURRSGCMR.csv, data file, comma-separated values</li> </ul>
Field Evidence of Carbon and Nitrogen Stabilization through Mineral Associated Organic Matter Formation in Coastal Wetland Soils from Apalachicola, Florida, collected in June, 2022.
This data set was used to observe the role of Mineral Associated Organic Matter Formation (MAOM) on biogeochemical soil properties in three coastal wetlands in Apalachicola, Florida. One wetland was restored using beneficial dredged sediment, increasing the soil's inorganic matter content. Soil samples were collected in June 2022 from this wetland and two nearby reference wetlands: one with high organic matter and the other with higher inorganic matter content. The samples were analyzed at the University of Central Florida for biogeochemical properties to determine which properties were most related to MAOM pools.
Physical and microbial processing of dissolved organic nitrogen (DON) (Salinity Experiment) along an oligotrophic marsh/mangrove/estuary ecotone (Taylor Slough and Florida Bay) for August 2003 in Everglades National Park (FCE), South Florida, USA
A better understanding of the biogeochemical cycling of nutrients entering Florida Bay is a key issue regarding the restoration of the Everglades. In addition to precipitation, the other major source of freshwater to Florida Bay is from Taylor Slough and the C-111 Basin in the northeast section of the Bay. While it is known that these areas deliver significant amounts of N to the Bay, a significant portion of this is in the form of dissolved organic N (DON). The sources, environmental fate and bioavailability to microorganisms of this DON are however, not known. Should this DON be readily available, any increased load as a function of restoration changes might have an impact on internal phytoplankton bloom dynamics. No significant flocculation or precipitation of DOM occurred with increase in salinity, meaning that terrestrial DOM does not get trapped in the sediments but stays in the water column where it subjected to photolysis and advective transport. Sunlight has a significant effect on the chemical characteristics of DOM. While the DOC levels did not change significantly during photo-exposure, the optical characteristics of the DOM were modified. The environmental implications of this are conflicting: photo-induced polymerization may stabilize the DOM by reducing its bioavailability while photolysis may make the DOM more labile. Overall, DON bioavailability was relatively low in this region. Even though the amount of DON loaded to the bay may be significant, the fraction of DON available for microbial cycling is much smaller. The amount of N supplied by recycling may be a significant portion of the total DIN pool. All this must be considered in context with the proposed CERP modifications to flows. As of the latest initial Comprehensive Everglades Restoration Project (CERP) update, the flows to Taylor Slough and C-111/Panhandle Basis are not predicted to change very much from base conditions. Therefore we do not expect any great increases in TN loading in this
Physical and microbial processing of dissolved organic nitrogen (DON) (Photodegradation Experiment) along an oligotrophic marsh/mangrove/estuary ecotone (Taylor Slough and Florida Bay) for August 2003 in Everglades National Park (FCE), South Florida, USA
A better understanding of the biogeochemical cycling of nutrients entering Florida Bay is a key issue regarding the restoration of the Everglades. In addition to precipitation, the other major source of freshwater to Florida Bay is from Taylor Slough and the C-111 Basin in the northeast section of the Bay. While it is known that these areas deliver significant amounts of N to the Bay, a significant portion of this is in the form of dissolved organic N (DON). The sources, environmental fate and bioavailability to microorganisms of this DON are however, not known. Should this DON be readily available, any increased load as a function of restoration changes might have an impact on internal phytoplankton bloom dynamics. No significant flocculation or precipitation of DOM occurred with increase in salinity, meaning that terrestrial DOM does not get trapped in the sediments but stays in the water column where it subjected to photolysis and advective transport. Sunlight has a significant effect on the chemical characteristics of DOM. While the DOC levels did not change significantly during photo-exposure, the optical characteristics of the DOM were modified. The environmental implications of this are conflicting: photo-induced polymerization may stabilize the DOM by reducing its bioavailability while photolysis may make the DOM more labile. Overall, DON bioavailability was relatively low in this region. Even though the amount of DON loaded to the bay may be significant, the fraction of DON available for microbial cycling is much smaller. The amount of N supplied by recycling may be a significant portion of the total DIN pool. All this must be considered in context with the proposed CERP modifications to flows. As of the latest initial Comprehensive Everglades Restoration Project (CERP) update, the flows to Taylor Slough and C-111/Panhandle Basis are not predicted to change very much from base conditions. Therefore we do not expect any great increases in TN loading in this
Characterization of dissloved organic nitrogen in an oligotrophic subtropical coastal ecosystem (Taylor Slough and Shark River Slough) for December 2001 in Everglades National Park (FCE), South Florida, USA
A better understanding of the biogeochemical cycling of nutrients entering Florida Bay is a key issue regarding the restoration of the Everglades. In addition to precipitation, the other major source of freshwater to Florida Bay is from Taylor Slough and the C-111 Basin in the northeast section of the Bay. While it is known that these areas deliver significant amounts of N to the Bay, a significant portion of this is in the form of dissolved organic N (DON). The sources, environmental fate and bioavailability to microorganisms of this DON are however, not known. Should this DON be readily available, any increased load as a function of restoration changes might have an impact on internal phytoplankton bloom dynamics. No significant flocculation or precipitation of DOM occurred with increase in salinity, meaning that terrestrial DOM does not get trapped in the sediments but stays in the water column where it subjected to photolysis and advective transport. Sunlight has a significant effect on the chemical characteristics of DOM. While the DOC levels did not change significantly during photo-exposure, the optical characteristics of the DOM were modified. The environmental implications of this are conflicting: photo-induced polymerization may stabilize the DOM by reducing its bioavailability while photolysis may make the DOM more labile. Overall, DON bioavailability was relatively low in this region. Even though the amount of DON loaded to the bay may be significant, the fraction of DON available for microbial cycling is much smaller. The amount of N supplied by recycling may be a significant portion of the total DIN pool. All this must be considered in context with the proposed CERP modifications to flows. As of the latest initial Comprehensive Everglades Restoration Project (CERP) update, the flows to Taylor Slough and C-111/Panhandle Basis are not predicted to change very much from base conditions. Therefore we do not expect any great increases in TN loading in this
Dissolved Organic Carbon (DOC) and Dissolved Total Nitrogen (DTN) from Northeast U.S. Shelf Long Term Ecological Research (NES-LTER) Transect cruises, ongoing since 2022
Dissolved organic carbon and dissolved total nitrogen are measured from discrete bottle samples collected during CTD rosette casts on Northeast U.S. Shelf Long-Term Ecological Research (NES-LTER) transect cruises (ongoing since 2022). Sampling frequency is approximately seasonal. Sample collection is paired with particulate organic carbon at surface, subsurface chlorophyll max, and sometimes a third depth. Samples are filtered directly from the CTD rosette and acidified in the field, then analyzed using a Shimadzu TOC-LCPH total organic carbon analyzer coupled to a TNM-L analyzer for total nitrogen. Values are reported in micromoles per liter.
Particulate organic carbon (POC) and nitrogen (PON) from Northeast U.S. Shelf Long Term Ecological Research (NES-LTER) Transect cruises, ongoing since 2017
Particulate organic carbon and nitrogen are measured from discrete bottle samples collected during CTD-rosette casts on Northeast U.S. Shelf Long-Term Ecological Research (NES-LTER) Transect cruises (ongoing since 2017). Sampling frequency is approximately seasonal. Samples were filtered and collected on combusted glass fiber filters, pelletized using ultra clean tin disks, and combusted using a Flash EA1112 CHN analyzer to calculate concentrations of particulate organic carbon and particulate organic nitrogen in micromoles per liter. Values are also reported as concentrations in micrograms per liter and carbon to nitrogen molar ratio.
Data and code from "Water availability is a stronger driver of soil microbial processing of organic nitrogen than tree species composition"
<p>#### Data description<br> Data from large scale, long-term tree diversity experiment in southwestern France (<a href="https://sites.google.com/view/orpheeexperiment/home">ORPHEE</a>), additionally manipulating water contraint. Variables presented are soil nitrogen cycling rates measured using isotope pool dilutions.</p> <p>Companion paper is found here:</p> <p>Maxwell TL, Augusto L, Tian Y, Wanek W & Fanin N (2023). Water availability is a stronger driver of soil microbial processing of organic nitrogen than tree species composition. <em>European Journal of Soil Science</em>. <a href="https://doi.org/10.1111/ejss.13350">https://doi.org/10.1111/ejss.13350</a></p> <p>#### Metadata<br> Soil sampling: July 2020<br> Maxwell_ShortComm_Data.csv data description</p> <p>ID: unique identifier per sample<br> Block: numbered 1-6. Blocks 1,3,6 are control (unirrigated), Blocks, 2,4,5 are irrigated<br> Plot: numbered plot according to the ORPHEE design. Plot 1 = BP, Plot 5 = PP, Plot 9 = BP_PP<br> Espece: species ID. BP = pure birch (<em>Betula pendula</em>), PP = pure pine (<em>Pinus pinaster</em>), BP_PP (50% mixed birch-pine)<br> Rep: sample replicate, 3 replicates per plot<br> Sample name: long unique identifier per sample. Concatenation of Block, Plot, and Espece<br> PD: gross protein depolymerization rates (micrograms nitrogen per grams dry soil per day = µg N g-1 d-1)<br> AAU: gross free amino acid uptake rates (µg N g-1 d-1)<br> Cmicrobial_ug_g: microbial biomass carbon (µg C g-1)<br> Nmicrobial_ug_g: microbial biomass nitrogen (µg N g-1)<br> MRT_FAA_hrs: mean residence time of free amino acids (hours)<br> FAA_ugN_g: free amino acids (µg N g-1)<br> Moisture_percent: soil moisture percent (%)<br> N_nonfumige_ug_g: nitrogen from non fumigated soils, i.e. extractable N (µg N g-1)<br> C_nonfumige_ug_g: nitrogen from non fumigated soils, i.e. extractableC (µg C g-1)</p>
Dissolved oxygen, temperature, chlorophyll-a, total phosphorus, total nitrogen, and dissolved organic carbon at multiple depths in 822 lakes from 1921-2022
Rapid changes in climate and land use are having substantial and interacting impacts on lake water quality around the world. Here, we synthesized time-series data for dissolved oxygen, temperature, chlorophyll-a, total phosphorus, total nitrogen, and dissolved organic carbon at multiple depths in 822 lakes to facilitate analyses of these changes. The dataset extends from 1921–2022, with a median data duration of 29 years (range 5-102) and a median of 5 unique sampling dates per year at each lake. Lakes in the dataset have a median depth of 12.5 m (range 1.5–480 m), median surface area of 85.4 ha (range: 0.5–237000 ha) and median elevation of 264 m (range: -215–2804). The lakes are located in 18 countries across 5 continents, with latitudes ranging from -42.6 to 68.3. To facilitate interoperability with other large-scale datasets, each lake is linked to a unique hydroLAKES lake ID when possible (n = 683).
Fire Self-Limitation (FiSL) Experiment: Quantifying Wildfire Carbon Combustion Losses in boreal Deciduous and Mixed Forests in Interior Alaska and the Boreal Cordillera IV: Organic Soil Carbon and Nitrogen Content from Organic Soil Samples 2022
This dataset contains lab-quantified (and some field-measured) characteristics for post-fire residual organic soil samples collected in the field for plots in 8 fire scars in Interior Alaska and the Yukon. Data was collected in the summer of 2022. Fire scars sampled included Shovel Creek (2019), Aggie Creek (2015), Hess Creek (2019), Baker (2015), Munson Creek (2021), Isom Creek (2020), 2019MA014 (2019), and 2019BC005 (2019). Lab analyses were conducted in summer and fall of 2022 at UAF and NAU.
Particulate organic carbon (POC) and nitrogen (PON) concentrations in discrete water column samples collected from lakes in the McMurdo Dry Valleys, Antarctica (1993-2024, ongoing)
An important part of the McMurdo Long Term Ecological Research (LTER) is evaluating carbon and nitrogen budgets in perennial ice-covered lakes. This dataset addresses this core area of research and quantifies the particulate organic carbon (POC) and nitrogen (PON) found at specific depths in lakes across the McMurdo Dry Valleys of Antarctica.
Soil organic matter and plant carbon allocated to nitrogen acquisition simulated by the FUN-BioCROP model
<p>This data package contains the model input, results, and validation data from Juice et al (citation below). The FUN-BioCROP model (Fixation and Uptake of Nitrogen- Bioenergy Carbon, Rhizosphere, Organisms, and Protection) advances the field of bioenergy modeling by integrating new empirical paradigms of the role of belowground processes in shaping coupled carbon (C) and nitrogen (N) cycles. It was developed by modifying the FUN-CORPSE model (Fixation and Uptake of Nitrogen- Carbon, Organisms, Rhizosphere, and Protection in the Soil Environment, Sulman et al. 2017 Ecology Letters) for use in bioenergy systems by including mechanistic tillage, organic matter addition, nitrogen fertilization, harvest, and feedstock-specific parameters, and to be driven by DayCent plant productivity and biomass data.</p>
Dataset for "Contrasting Effects of Organic and Mineral Nitrogen Challenge the N-Mining Hypothesis for Soil Organic Matter Priming"
<p>Dataset for the article:</p> <p>Mason-Jones, K., Schmücker, N., Kuzyakov, Y. (2018) Contrasting Effects of Organic and Mineral Nitrogen Challenge the N-Mining Hypothesis for Soil Organic Matter Priming. Soil Biology and Biochemistry 124, 38-46, https://doi.org/10.1016/j.soilbio.2018.05.024</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.