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14 results for “ovariectomy”
Data for: Monitoring the effects of ovariectomy on seasonal movement behavior in suburban female white-tailed deer using Internet of Things-enabled devices
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Alterations in gut microbiota do not play a causal role in diet-independent weight gain caused by ovariectomy
<p>These files are associated with the following publication:<a href="https://doi.org/10.1210/jendso/bvaa173">https://doi.org/10.1210/jendso/bvaa173</a></p> <p>And the sequence data are available at the European Nucleotide Archive: PRJEB40801</p> <p>This link contains the metadata, sequences reads, and analysis files used in the study "Alterations in gut microbiota do not play a causal role in diet-independent weight gain caused by ovariectomy."</p> <p>Alpha_diversity files:<br> File: AlphaDiversity_analysis_sham_ovex<br> Description: R statistical analysis file for Faith's Phylogenetic Diversity (Faith's PD) and Observed<br> Sequence Variant (SV) alpha diversity metrics<br> File: faith_pd_sham_ovex<br> Description: QIIME2 output file for Faith's PD alpha diversity measurements for sham/ovex samples<br> File: obserevd_svs_sham_ovex<br> Description: QIIME2 output file for Observed SVs alpha diversity measurements for sham/ovex samples<br> </p> <p>Beta_diversity files:<br> File: BetaDiversity_analysis_sham_ovex<br> Description: R statistical analysis file for beta diversiy metrics<br> File: merged.sv.sham.ovex<br> Description: Combined SV table and taxa table for sham/ovex samples <br> File: sv.sham.ovex<br> Description: SV table for sham/ovex samples<br> File: table.sham.ovex.biom<br> Description: BIOM formated file for combined SV and taxa data. (For import into Phyloseq)<br> File: tax.sham.ovex<br> Description: Taxa table for sham/ovex samples<br> File: tree.nwk<br> Description: Phylogentic tree for sham/ovex data (For import into Phyloseq)<br> <br> DeSeq2 Analysis files:<br> File: merged.sv.sham.ovex.trimmed<br> Description: Combined SV table and taxa table for sham/ovex samples. SVs found in 4 samples or less removed. <br> File: sv.table.sham.ovex.trimmed <br> Description: SV table for sham/ovex samples. SVs found in 4 samples or less removed.<br> File: sham.ovex.trimmed.biom<br> Description: BIOM formated file for combined SV and taxa data. SVs found in 4 samples or less removed.(For import into Phyloseq)<br> File: tax.sham.ovex.trimmed<br> Description: Taxa table for sham/ovex samples. SVs found in 4 samples or less removed.<br> File: tree.trimmed.nwk<br> Description: Phylogentic tree for sham/ovex data. SVs found in 4 samples or less removed. (For import into Phyloseq)<br> File: Phyloseq.DeSeq2.Ovex.Sham<br> Description: Log2 Fold change analysis (relative species abundance) done in DESeq2 for time points 1-5.<br> File: Phyloseq.DeSeq2.Ovex.Sham.week3<br> Description: Log2 Fold change analysis (relative species abundance) done in DESeq2 for time point 3.<br> File: Phyloseq.DeSeq2.Ovex.Sham.week4<br> Description: Log2 Fold change analysis (relative species abundance) done in DESeq2 for time point 4.<br> File: Phyloseq.DeSeq2.Ovex.Sham.week5<br> Description: Log2 Fold change analysis (relative species abundance) done in DESeq2 for time point 5.<br> <br> <br> Mapping_files including metadata (for use with sequences below):<br> File: ovex_mapping <br> Description: Mapping file - maps barcodes to samples<br> File: ovex_mapping_samples removed<br> Description: Mapping file - maps barcodes to reads. Two samples removed for low sequence count.<br> 1. Plate2 A08 806rcbc103 GCG AGC GAA GTA CCG GAC TAC HVG GGT WTC TAA T 8 870 (T2) Ovex F<br> 2. Plate2 C02 806rcbc121 GCA ATT AGG TAC CCG GAC TAC HVG GGT WTC TAA T 26 888 (T2) Co-Sham O<br> File: ovex_mapping_sham_ovex_samples removed<br> Description: Mapping file - maps barcodes to reads. Sham/ovex samples only. One sample removed for low sequence count.<br> 1. Plate2 A08 806rcbc103 GCG AGC GAA GTA CCG GAC TAC HVG GGT WTC TAA T 8 870 (T2) Ovex F<br> </p> <p>QIIME2 Script:</p> <p>File: QIIME2_sham_ovex<br> Description: This file includes the commands used in the QIIME2 pipeline.</p>
Gene expression changes in femur tissues of ovariectomy-induced osteoporosis rats
GEO Series GSE201674. Rattus norvegicus. 2 samples. Type: Expression profiling by high throughput sequencing.
Pathway Preferential Estrogens prevent hepatosteatosis due to ovariectomy and high-fat diets
GEO Series GSE181780. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing.
Bone gene expression profiles after ovariectomy in multiple inbred strains
GEO Series GSE68303. Mus musculus. 23 samples. Type: Expression profiling by array.
Ovariectomy Drives Increase an ECM Transcription Signature in the Posterior Eye and Retina
GEO Series GSE272170. Rattus norvegicus. 48 samples. Type: Expression profiling by high throughput sequencing.
NVP-BHG712 alleviates ovariectomy-induced osteoporosis by modulating osteoclastogenesis
GEO Series GSE261350. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Bone gene expression profiles in alpha-synuclein (Snca) knockout mice after ovariectomy
GEO Series GSE68302. Mus musculus. 16 samples. Type: Expression profiling by array.
Expression data from the murine salivary gland (SG; submandibular gland) 8 weeks after the ovariectomy (OVX) or sham surgery (Cont)
GEO Series GSE241395. Mus musculus. 6 samples. Type: Expression profiling by array.
Expression data from mouse uteri after ovariectomy and E2 treatment.
GEO Series GSE6219. Mus musculus. 6 samples. Type: Expression profiling by array.
Alpha-Synuclein (Snca) regulates ovariectomy-induced bone loss by altering the expression of genes in specific bone network modules
GEO Series GSE68313. Mus musculus. 39 samples. Type: Expression profiling by array.
microRNA expression in sham and ovariectomy (OVX) mice femur tissue
GEO Series GSE109705. Mus musculus. 2 samples. Type: Non-coding RNA profiling by array.
Long-term post-ovariectomy mouse model recapitulates hypothalamic transcriptomic changes observed during the menopausal transition in women
GEO Series GSE288245. Mus musculus. 33 samples. Type: Expression profiling by high throughput sequencing.
Effect of ovariectomy and LCAT overexpression on gene expression of mouse liver cancer
GEO Series GSE255753. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
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International Brain Laboratory public data
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OpenNeuro
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