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27 results for “parsimony analysis”
FIGURE 37. Phylogenetic results from parsimony analysis using the cranial dataset. A in A reappraisal of the cranial and mandibular osteology of the spinosaurid Irritator challengeri (Dinosauria: Theropoda)
FIGURE 37. Phylogenetic results from parsimony analysis using the cranial dataset. A, strict consensus tree of 153 MPTs retained from an equal weighting analysis (see Methods for details); B, reduced consensus tree, pruning wild card taxa from the strict consensus. Wild card taxa are highlighted with coloured boxes in A, and their possible topological positions are shown with same coloured squares in B. Important clades are labelled.
FIGURE 36. Phylogenetic results from parsimony analysis using the full dataset. A in A reappraisal of the cranial and mandibular osteology of the spinosaurid Irritator challengeri (Dinosauria: Theropoda)
FIGURE 36. Phylogenetic results from parsimony analysis using the full dataset. A, strict consensus tree of 8184 MPTs retained from an equal weighting analysis (see methods for details); B, partial reduced consensus tree, showing the clade Spinosauridae after removal of the taxon Vallibonavenatrix; C, strict consensus tree of 406 MPTs retained from an implied weighting analysis using a concavity constant of k=10 (see Methods for details). Important clades are labelled. Irritator as the main focus of our study is highlighted in bold face within the clade Spinosauridae.
Text-fig. 1. D&E tree of Endress and Doyle (2009), from the combined morphological and molecular analysis of Doyle and Endress (2000), with modifications based on more recent data, showing the inferred evolution of the reticulum grading character (39). Boxes under names of taxa indicate their character state; shading of branches indicates their reconstructed state based on parsimony optimization with MacClade (Maddison and Maddison 2003). Nymph = Nymphaeales, Aust = Austrobaileyales, Chlor = Chloranthaceae, Piper = Piperales, Ca = Canellales, Magnol = Magnoliales. in Early Cretaceous Monocots: A Phylogenetic Evaluation
Text-fig. 1. D&E tree of Endress and Doyle (2009), from the combined morphological and molecular analysis of Doyle and Endress (2000), with modifications based on more recent data, showing the inferred evolution of the reticulum grading character (39). Boxes under names of taxa indicate their character state; shading of branches indicates their reconstructed state based on parsimony optimization with MacClade (Maddison and Maddison 2003). Nymph = Nymphaeales, Aust = Austrobaileyales, Chlor = Chloranthaceae, Piper = Piperales, Ca = Canellales, Magnol = Magnoliales.
FIGURE 7. 1, Strict consensus tree for parsimony analysis including Marada arcanum. 2 in New genus of primitive wombat (Vombatidae, Marsupialia) from Miocene deposits in the Riversleigh World Heritage Area (Queensland, Australia)
FIGURE 7. 1, Strict consensus tree for parsimony analysis including Marada arcanum. 2, Bootstrap support for single most parsimonious tree from analysis excluding Marada arcanum (see text for details). Vombatidae indicated in purple.
Figure 7. The strict consensus tree obtained from the parsimony analysis with 35 in Descriptions and phylogenetic relationships of two new genera and four new species of Oligo-Miocene waterfowl (Aves: Anatidae) from Australia
Figure 7. The strict consensus tree obtained from the parsimony analysis with 35 characters ordered. Support values above lines at each node show bootstrap> 50% and Bayesian credibility values> 70% (100% = *). Values below lines are numbers of unambiguous synapomorphies for each node. Clades A, B, and C are referred to in text and Table 4.
FIGURE 1. The strict consensus tree resulting from the parsimony analysis I in Taxonomy and evolution of asymmetric male genitalia in the subgenus Ashima Chen (Diptera: Drosophilidae: Phortica Schiner), with descriptions of seven new species
FIGURE 1. The strict consensus tree resulting from the parsimony analysis I (PAUP* v4.0a166) of the data matrix of 40 spp. × 66 morphological characters (Appendix 1) for the genus Phortica (especially focusing on the subgenus Ashima). Synapomorphies (solid circle: nonhomoplastic; open circle: homoplastic) inferred from both ACCTRAN and DELTRAN character optimization are indicated on each internal branch along with support values (bootstrap frequency %).
FIGURE 8. Single most parsimonious tree obtained for Chilicola s in Revision and phylogenetic analysis of Chilicola sensu stricto (Hymenoptera: Colletidae) with the description of a new species
FIGURE 8. Single most parsimonious tree obtained for Chilicola s. str. Support values are shown (GC value/frequency slope/Bremer support). Length: 100, CI: 62, RI: 67. The secondary sexual expansion of the male hind tibia has been mapped onto the phylogeny (blue branch without preapical concavity; red branches with preapical concavity).
FIGURE 7. Most-parsimonious tree from Analysis A in A new leptochelioid family, Heterotanoididae (Crustacea: Peracarida: Tanaidacea), and a new species of Heterotanoides from New Zealand
FIGURE 7. Most-parsimonious tree from Analysis A, Traditional Search, un-weighted scores, showing Bremer support values.
FIGURE 6. Strict consensus tree from the unweighted parsimony analysis that yielded 10,000 in Systematic revision of the family Kalliapseudidae (Crustacea: Tanaidacea)
FIGURE 6. Strict consensus tree from the unweighted parsimony analysis that yielded 10,000 (overflow) most parsimonious trees.
FIGURE 2 in Biogeographic area relationships in Venezuela: A Parsimony analysis of Culicidae-Phytotelmata distribution in National Parks
FIGURE 2. The most parsimonious cladogram (Length=101 steps) obtained with implicit enumeration, showing the characters (mosquito species; Table IV) that were a synapomorphy (black circles) or a homoplasy (white circles). Numbers above and below branches indicate bootstrap and jackknife support respectively (1000 replications).
FIGURE 1 in Biogeographic area relationships in Venezuela: A Parsimony analysis of Culicidae-Phytotelmata distribution in National Parks
FIGURE 1. Map of Venezuela showing where immature mosquitoes were sampled from phytotelmata habitats in National Parks and Protected Areas, and the biogeographical areas deducted from the PAE cladogram. Numbers on figure are collecting locations: 1=HUACHAMAKARI TEPUI, 2=PERIJA, 3=GRAN SABANA, 4=AUYAN TEPUI, 5=RORAIMA-KUKENAN TEPUI, 6=GUANAY TEPUI, 7=YUTAJE TEPUI, 8=TAMA, 9=DINIRA, 10=SIERRA NEVADA "A", 11=SIERRA NEVADA "B", 12=CERRO COPEY, 13=CERRO SANTA ANA, 14=SIERRA DE SAN LUIS, 15=RANCHO GRANDE, 16=GUATOPO
FIGURE 2. Phylogram from a Maximum Parsimony analysis, representing a 50 in Molecular systematics of Malagasy poison frogs in the Mantella betsileo and M. laevigata species groups
FIGURE 2. Phylogram from a Maximum Parsimony analysis, representing a 50% majority-rule consensus tree of 65700 equally most parsimonious trees. Mantella bernhardi was defined as outgroup. Specimens with identical haplotypes were merged; numbers in brackets after names of taxa give the number of specimens with the same haplotype. Numbers at nodes are bootstrap values in percent from a Maximum Parsimony bootstrap analysis with 250 replicates. Asterisks denote posterior probabilities from a partitioned Bayesian analysis: (*)>90%; *>95%; **>99%.
FIGURE 2. Individual hypothetical area cladograms and matrix creation through BuM 2.0. A. Individual area cladogram with a redundant Area E. B. Individual area cladogram with a redundant Area D. C. Individual area cladogram with a in BuM 2.0: Software for online generation of matrices for Brooks Parsimony Analysis
FIGURE 2. Individual hypothetical area cladograms and matrix creation through BuM 2.0. A. Individual area cladogram with a redundant Area E. B. Individual area cladogram with a redundant Area D. C. Individual area cladogram with a MAST (D#E). D. Combined MRP-matrix after BuM 2.0 (option Modified BPA); og: outgroup. E. General area cladogram after the parsimony analysis of the combined matrix. The resulting pattern converges with the actual pattern of fragmentation of ancestral Area 0.
FIGURE 1 in BuM 2.0: Software for online generation of matrices for Brooks Parsimony Analysis
FIGURE 1. Hypothetical scenario showing the sequence of breakups of an ancestral Area 0, and the corresponding area cladogram depicting the actual relationships among the current landmasses.
FIGURE 3. The strict consensus tree from parsimony analysis for the combined 16S and RAG1-AmpF1 in Maluti Mystery: A systematic review of Amietia vertebralis (Hewitt, 1927) and Strongylopus hymenopus (Boulenger, 1920) (Anura: Pyxicephalidae)
FIGURE 3. The strict consensus tree from parsimony analysis for the combined 16S and RAG1-AmpF1 dataset with Pyxicephalus adspersus as the outgroup. Bootstrap values are shown at the major nodes. Branch lengths are proportional to the number of unambiguous changes in the original sequence data. Abbreviations of localities for sequenced samples are as follows: M = Mohlaka, B = Bafali, D = Senqu, Q = Qabane, S = Tsatsana, T = Tugela, V = Vemvane, J = Sani, * = Genbank sequence. Note that the two Amietia angolensis sequences from Genbank emerge from the tree as divergent lineages. This may indicate cryptic diversity or simply misidentification of these phenotypically diverse and difficult to identify frogs.
FIGURE 2. Most parsimonious combined tree under equal weights, with 17 in Phylogenetic analysis of the Pantomorus-Naupactus complex (Coleoptera: Curculionidae: Entiminae) from North and Central America
FIGURE 2. Most parsimonious combined tree under equal weights, with 17 morphological characters coded as additive. Bootstrap values over 50% below the corresponding branches.
FIGURE 1. Most parsimonious morphological tree under equal weights, with 17 in Phylogenetic analysis of the Pantomorus-Naupactus complex (Coleoptera: Curculionidae: Entiminae) from North and Central America
FIGURE 1. Most parsimonious morphological tree under equal weights, with 17 morphological characters coded as additive. Bremer support values over 3 are given above each corresponding branch and bootstrap values over 50% are below the branches.
Figure 5. Most parsimonious tree obtained after analysis 1 in Early fossils illuminate character evolution and interrelationships of Lampridiformes (Teleostei, Acanthomorpha)
Figure 5. Most parsimonious tree obtained after analysis 1 (with only the ten extant taxa included). Numbers above branches are Bremer indexes; tree length = 107 steps; consistency index, CI = 0.64; retention index, RI = 0.71.
Figure 104. Most parsimonious tree obtained from the analysis using 68 in The tribe Bryocorini (Insecta: Heteroptera: Miridae: Bryocorinae): phylogeny, description of a new genus, and adaptive radiation on ferns
Figure 104. Most parsimonious tree obtained from the analysis using 68 morphological characters (tree length = 213 steps; consistency index, CI = 0.52; retention index, RI = 0.79). Characters are plotted showing fast optimization. Filled circles, non-homoplastic characters mapped by state (discontinuous characters are mapped as homoplasy); open circles, homoplastic characters. Nodes 1–15 are discussed in the text.
Figure 10. The most parsimonious tree that resulted from the phylogenetic analysis, with 509 in The cranial morphology of the temnospondyl Australerpeton cosgriffi (Tetrapoda: Stereospondyli) from the Middle-Late Permian of Paraná Basin and the phylogenetic relationships of Rhinesuchidae
Figure 10. The most parsimonious tree that resulted from the phylogenetic analysis, with 509 steps, depicting the position of Australerpeton cosgriffi. Decay indices (Bremer support) with values above 1 are given below the nodes. Bootstrap percentages are given after the Bremer support values (ins) for clades with values above 50%.
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.