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ShareScore release 0.9.0
Dataset results
2 results for “phables”
Phables v 0.2.0 benchmarking data and results
<p>This record contains all the benchmarking datasets and results for the Phables manuscript. The datasets used are,</p> <ol> <li>Water samples from Nansi Lake and Dongping Lake in n Shandong Province, China (NCBI BioProject number PRJNA756429), referred to as <strong>Lake Water</strong></li> <li>Soil samples from flooded paddy fields from Hunan Province, China (NCBI BioProject number PRJNA866269), referred to as <strong>Paddy Soil</strong></li> <li>Wastewater virome (NCBI BioProject number PRJNA434744), referred to as <strong>Wastewater</strong></li> <li>Stool samples from patients with IBD and their healthy household controls (NCBI BioProject number PRJEB7772), referred to as <strong>IBD</strong></li> </ol> <p>Each dataset was preprocessed using Hecatomb. The Lake Water dataset was also assembled using MEGAHIT (referred to as <strong>Lake Water - MEGAHIT</strong>) and metaSPAdes (referred to as <strong>Lake Water - metaSPAdes</strong>). All the datasets were run using PHAMB and Phables and the genomes were evaluated using CheckV.</p>
Phables v 1.1.0 benchmarking data and results
<p>This record contains all the benchmarking datasets and results for the Phables manuscript. The datasets used are,</p> <ol> <li>A simulated dataset containing four phages Enterobacteria phage P22, Enterobacteria phage T7, Staphylococcus phage SAP13 TA-2022 and Staphylococcus phage SAP2 TA-2022, referred to as <strong>simPhage</strong></li> <li>Water samples from Nansi Lake and Dongping Lake in n Shandong Province, China (NCBI BioProject number PRJNA756429), referred to as <strong>Lake Water</strong></li> <li>Soil samples from flooded paddy fields from Hunan Province, China (NCBI BioProject number PRJNA866269), referred to as <strong>Paddy Soil</strong></li> <li>Wastewater virome (NCBI BioProject number PRJNA434744), referred to as <strong>Wastewater</strong></li> <li>Stool samples from patients with IBD and their healthy household controls (NCBI BioProject number PRJEB7772), referred to as <strong>IBD</strong></li> </ol> <p>The simulated dataset was assembled using metaSPAdes and the real datasets were preprocessed using Hecatomb. The Lake Water dataset was also assembled using MEGAHIT (referred to as <strong>Lake Water - MEGAHIT</strong>) and metaSPAdes (referred to as <strong>Lake Water - metaSPAdes</strong>). The simulated dataset was run using Phables and evaluated using metaQUAST. All the real datasets were run using PHAMB and Phables and the genomes were evaluated using CheckV.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.