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3 results for “phosphorolysis”
Collection of UV/Vis spectra acquired while monitoring reaction progress of thymidine phosphorolysis with varying reactant concentrations
<p>This data set accompanies the publication "Dynamic modelling of phosphorolytic cleavage catalyzed by pyrimidine-nucleoside phosphorylase" in MDPI Processes, and is a collection of UV/vis spectra used for monitoring of reaction progress under various experimental conditions.</p> <p>The monitored reaction is thymidine phosphorolysis, catalyzed by an enzyme (EC 2.4.2.2). Phosphate and thymidine concentrations are in the range of 2–80 mM and 0.8–5 mM, respectively, and final enzyme concentration in the range of 12.5–50 µg/mL. The recorded data represents time courses over 24 hours for 48 reaction conditions.</p> <p>This collection also contains the documentation of all work done in the laboratory to achieve this data (provenance in the form of the complete lab journal).</p>
Supplementary Material for "Thermodynamic Reaction Control of Nucleoside Phosphorolysis"
<p>This is the supplementary material for our publication "Thermodynamic Reaction Control of Nucleoside Phosphorolysis".</p> <p>The .pdf file contains the supplementary information: Author Contributions, Figure S1 and Tables S1-S3.</p> <p>The .zip file contains the raw data, metadata and results from Figure 1, 2, 4 and 5.</p> <p>The .xlsx file contains</p> <ol> <li>the apparent transformed values of the reaction enthalpy and entropy of nucleosides <strong>1</strong>-<strong>24</strong></li> <li>the calculated apparent Gibbs free energies of nucleosides <strong>1</strong>-<strong>24</strong> and</li> <li>the implementation of these values for the calculation of equilibrium conversions of nucleosides <strong>1</strong>-<strong>24</strong> with variable (adjustable) reaction conditions (concentrations of the nucleoside, phosphate and reaction temperature).</li> </ol> <p>For the software employed for spectra unmixing, please see doi: 10.5281/zenodo.3243376 and our previous work (doi: 10.3390/mps2030060) as well as its supporting material (doi: 10.5281/zenodo.3333469) for clarification.</p>
Supplementary Material for "Kinetic Analysis of the Hydrolysis of Pentose-1-phosphates through Apparent Nucleoside Phosphorolysis Equilibrium Shifts"
<p>This is the external Supplementary Information for our publication "Kinetic Analysis of the Hydrolysis of Pentose-1-phosphates through Apparent Nucleoside Phosphorolysis Equilibrium Shifts".</p> <p>The .pdf file contains the Supplementary Information: author contributions, experimental procedures, derivation of equations and supplementary items.</p> <p>The .zip file contains the raw data and metadata for all items (supplementary and main text) and the calculations.</p> <p>Like most publications, this one builds on previous work. The Python code used for spectral unmixing is available on this platform (10.5281/zenodo.3243376) and has been described in our previous publications (10.3390/mps2030060, 10.5281/zenodo.3333469, 10.1002/cbic.202000204, 10.5281/zenodo.3723806 ). Further applications of this method can be found in our recent article in <em>Adv. Synth. Catal.</em> (10.1002/adsc.201901230) and its supporting material (10.5281/zenodo.3568858), as well as a preprint (10.26434/chemrxiv.12993416.v1) and its supporting material (10.5281/zenodo.4043929).</p>
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