Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
501
datasets available to search
ShareScore release 0.9.0
Dataset results
501 results for “phylogenetic taxonomy”
Fig. 3. Phylogenetic relationships among a in Phylogenomic Species Delimitation, Taxonomy, and 'Bird Guide' Identification for the Neotropical Ant Genus Rasopone (Hymenoptera: Formicidae)
Fig. 3. Phylogenetic relationships among a curated set of COI barcode sequences for Rasopone. Black samples were sequenced for UCEs. Red samples were downloaded from the BOLD database.The tree was inferred using IQ-TREE with the data partitioned by codon position. Black circles on nodes indicate high support, which we define as ≥95% ultrafast bootstrap support and ≥95% SH-like branch support.Terminal names match taxonomic changes proposed in paper and provide useful sample identifiers (e.g., extraction codes [EX#] or BOLD process IDs).A complete, unpruned COI tree is available in Supp Fig. S1 (online only).
Fig. 6 in The Taxonomy And Phylogenetic Relationships Of Species In The Bactrocera Musae Complex Of Fruit Flies (Diptera: Tephritidae: Dacinae) In Papua New Guinea
Fig. 6. Neighbour joining tree showing relationships between CO1 haplotypes from species in the Bactrocera musae complex. Values at nodes are for 1000 bootstrap replicates of the maximum likelihood calculations using the Kimura two-parameter model of sequence evolution (left) and Bayesian posterior probability (right). Clade A = B. musae, Clade B = B. rufivitta, Clade C = B. contermina. Note: the numbers at the branch tips represent the field collection codes given to individual specimens.
Fig. 7 in The Taxonomy And Phylogenetic Relationships Of Species In The Bactrocera Musae Complex Of Fruit Flies (Diptera: Tephritidae: Dacinae) In Papua New Guinea
Fig. 7. Diagram showing clustering of individuals at (A) the highest hierarchical level of structuring in the Bactrocera musae complex using STRUCTURE, and (B) the sub-group structuring into two further clusters of the individuals from the red cluster in A. Vertical bars represent individuals and colours denote the proportion of ancestry from each cluster based on eight microsatellite loci. Note at the highest level (A), individuals are clearly assigned to either the B. musae or the 'others' cluster. At the next level (B), individuals from the 'others' cluster are assigned to either the B. rufivitta cluster (red) or the B. contermina cluster (green). Note: The numbers below the vertical bars represent the field collection codes given to individual specimens.
Figure 1 in Phylogenetic taxonomy of the Cercosaurini (Squamata: Gymnophthalmidae), with new genera for species of Neusticurus and Proctoporus
Figure 1. Preferred Bayesian phylogenetic reconstruction of four genes of the Cercosaurini with outgroups representing the other clades of the Gymnophthalmidae from Castoe et al. (2004). Values above branches represent posterior probability values. Branch lengths of the Cercosaurini are informative, whereas branch lengths of the outgroups are not informative. Labels (a) and (b) indicate individuals of a species from Castoe et al. (2004). The vertical bars on the right of the figure indicate the new generic status of the target taxa.
Fig. 12 in The mostly cavernicolous millipede genus Stygiiulus Verhoeff, 1929, stat. nov.: taxonomy, distribution and phylogenetic relationships (Diplopoda, Julida, Julidae)
Fig. 12. Bayesian inference tree based on concatenated 16S rRNA + 28S rRNA dataset from Enghoff et al. (2013) and Makarov et al. (2017). The single species with newly obtained sequences is shown in red.
Fig. 10 in The mostly cavernicolous millipede genus Stygiiulus Verhoeff, 1929, stat. nov.: taxonomy, distribution and phylogenetic relationships (Diplopoda, Julida, Julidae)
Fig. 10. Left gonopods of species of Stygiiulus stat. nov., mesal views. A. S. ausugi (Manfredi, 1953) comb. nov.,topotype ♂ (NHMD). B. S. illyricus (Verhoeff, 1929) comb. nov., redrawn from Verhoeff (1929). C. S. insularis (Strasser, 1938) comb. nov., redrawn from Antić et al. (2018). D. S. maximus (Verhoeff, 1929) comb. nov., redrawn from Verhoeff (1930). E. S. seewaldi (Strasser, 1967) comb. nov., redrawn and modified from Strasser (1967). F. S. tobias (Berlese, 1886) comb. nov., ♂ from Grotta [Cave] del Subiolo (NHMD). Abbreviations: do = distal outgrowth of velum. Drawn not to scale.
Fig. 9 in The mostly cavernicolous millipede genus Stygiiulus Verhoeff, 1929, stat. nov.: taxonomy, distribution and phylogenetic relationships (Diplopoda, Julida, Julidae)
Fig. 9. Stygiiulus rotundatus (Strasser, 1962) comb. et stat. nov., paralectotype ♂ (A) (MHNG), ♂ from Grotta [cave] di Collagù (B) (MHNG) and ♂ (C–D) and ♀ (E) from La Bora Cave (NHMD). A. Leg-pair 1, oral view. B. Penis, oral/caudal view. C. Right gonopods, mesal view (inverted). D. Left mesomere, oral view. E. Left vulva, caudal, somewhat mesal view. Abbreviations: ab = anterior branch of solenomere; la = lateral ampulla; lt = lateral tube; m = mesomere; ma = median ampulla; mt = median tube; op = operculum; p = promere; pb = posterior branch of solenomere; ph = posterior hump; v = velum. Scale bars: A = 0.4 mm; B = 0.2 mm; C–E = 0.3 mm.
Fig. 7 in The mostly cavernicolous millipede genus Stygiiulus Verhoeff, 1929, stat. nov.: taxonomy, distribution and phylogenetic relationships (Diplopoda, Julida, Julidae)
Fig. 7. Stygiiulus montellensis (Verhoeff, 1930) comb. nov., ♂ from Grotta [cave] Crede-a (NHMD). A. Right gonopods, mesal view. B. Right mesomere, oral view. C. Left vulva, caudal, slightly mesal view. Abbreviations: la = lateral ampulla; lt = lateral tube; m = mesomere; ma = median ampulla; mt = median tube; op = operculum. Scale bars: A–B = 0.2 mm; C = 0.3 mm.
Fig. 5 in The mostly cavernicolous millipede genus Stygiiulus Verhoeff, 1929, stat. nov.: taxonomy, distribution and phylogenetic relationships (Diplopoda, Julida, Julidae)
Fig. 5. Stygiiulus gentianae (Strasser, 1971) comb. et stat. nov., ♂ paralectotype (A–B) (MHNG), topotype ♂ (C) (NHMD) and topotype ♀ (D) (NHMD). A. Leg-pair 1, oral view. B. Penis, oral/caudal view. C. Left gonopods, mesal view. D. Left vulva, caudal, somewhat mesal view. Abbreviations: ab = anterior branch of solenomere; lt = lateral tube; m = mesomere; ma = median ampulla; mt = median tube; op = operculum; p = promere; pb = posterior branch of solenomere; ph = posterior hump; v = velum. Scale bars: A, C–D = 0.2 mm; B = 0.1 mm.
Fig. 6 in The mostly cavernicolous millipede genus Stygiiulus Verhoeff, 1929, stat. nov.: taxonomy, distribution and phylogenetic relationships (Diplopoda, Julida, Julidae)
Fig. 6. Stygiiulus gentianae (Strasser, 1971) comb. et stat. nov., ♂ from Grotta [cave] della Vecchia Diga (NHMD). A. Right promere, caudal view. B. Right mesomere, oral view. C. Distal part of left opisthomere, mesal view. Abbreviations: ab = anterior branch of solenomere; el = external lobe; il = internal lobe; pb = posterior branch of solenomere; ph = posterior hump; v = velum. Scale bars = 0.05 mm.
Fig. 2 in The mostly cavernicolous millipede genus Stygiiulus Verhoeff, 1929, stat. nov.: taxonomy, distribution and phylogenetic relationships (Diplopoda, Julida, Julidae)
Fig. 2. Stygiiulus fimbriatus (Strasser, 1971) comb. et stat. nov., ♂ from from Foran di Landri Cave (IBER). A. Gnathochilarium, ventral view. B. Gnathal lobe of left mandible, ventral view. C. Left promere, caudal view. D. Left mesomere, oral view. E. Distal part of left opisthomere, mesal view. Abbreviations: ab = anterior branch of solenomere; el = external lobe; et = external tooth; il = internal lobe; it = internal tooth; mp = mollar plate; pb = posterior branch of solenomere; ph = posterior hump; pl = pectinate lamellae; pm = promentum; sf = setiform filaments; v = velum. Scale bars: A = 0.2 mm; B = 0.1 mm; C–D = 0.05 mm; E = 0.02 mm.
Fig. 4 in The mostly cavernicolous millipede genus Stygiiulus Verhoeff, 1929, stat. nov.: taxonomy, distribution and phylogenetic relationships (Diplopoda, Julida, Julidae)
Fig. 4. Stygiiulus gentianae (Strasser, 1971) comb. et stat. nov., ♂ (A–C, E, G) from Grotta [cave] della Vecchia Diga, ♂ topotype (D, H) and ♀ topotype (F, I) (NHMD). A. Habitus, lateral view. B. Anterior part of body, lateral view. C. Labrum, frontal view. D. Labrum, dorsal view. E. Pleurotergum 7, lateral view. F. Mid-body rings, lateral view. G. Telson, lateral view. H. Posterior node of hypopharynx, frontoventral view. I. Lobe of body ring 3, lateral view. Scale bars: A = 1 mm; B–G, I = 0.5 mm; H = 0.1 mm.
Fig. 1 in The mostly cavernicolous millipede genus Stygiiulus Verhoeff, 1929, stat. nov.: taxonomy, distribution and phylogenetic relationships (Diplopoda, Julida, Julidae)
Fig. 1. Stygiiulus fimbriatus (Strasser, 1971) comb. et stat. nov., ♂♂ (A–H) and ♀ (I) from Foran di Landri Cave (IZB). A. Habitus, lateral view. B. Anterior part of body, lateral view. C. Labrum, frontodorsal view. D. Labrum, dorsal view. E. Pleurotergum 7, lateral view. F. Mid-body rings, lateral view. G. Telson, lateral view. H. Posterior node of hypopharynx, fronto-ventral view. I. Lobe of body ring 3, lateral view. Scale bars: A = 1 mm; B–G, I = 0.5 mm; H = 0.1 mm.
Fig. 11 in The mostly cavernicolous millipede genus Stygiiulus Verhoeff, 1929, stat. nov.: taxonomy, distribution and phylogenetic relationships (Diplopoda, Julida, Julidae)
Fig. 11. Left vulvae of species of Stygiiulus stat. nov. (A–D) and representatives of (other) Julini/ Leptoiulini (E) and Typhloiulini/blind Julini/Leptoiulini in caudal, somewhat mesal views. A. S. ausugi (Manfredi, 1953) comb. nov., ♀ from Grotta [Cave] del Calgeron (NHMD). B. S. illyricus (Verhoef, 1929) comb. nov., ♀ from Rabakova Cave (IZB). C. S. insularis (Strasser, 1938) comb. nov., topotype ♀ (CBSS). D. S. tobias (Berlese, 1886) comb. nov., ♀ from Grotta [Cave] del Subiolo (NHMD). E. Leptoiulus cf. trilineatus (C.L. Koch, 1847), ♀ from Belasitsa Mtn, Bulgaria. F. Serboiulus spelaeophilus Gulička, 1967, ♀ from Vodni Pech Cave (NMNHS). G. Typhloiulus (Inversotyphlus) lobifer Attems, 1951, ♀ from Minjera-Bauxite Mine (IBER). H. Typhloiulus (s. str.) strictus (Latzel, 1882), ♀ from Kunino (IBER). Abbreviations: at = anterior tube; la = lateral ampulla; lt = lateral tube; ma = median ampulla; mt = median tube; op = operculum; pa = posterior ampulla; pt = posterior tube. Scale bar = 0.2 mm.
Fig. 8 in The mostly cavernicolous millipede genus Stygiiulus Verhoeff, 1929, stat. nov.: taxonomy, distribution and phylogenetic relationships (Diplopoda, Julida, Julidae)
Fig. 8. Stygiiulus rotundatus (Strasser, 1962) comb. et stat. nov., ♀ (A) and ♂ (B–E) from La Bora Cave (NHMD). A. Habitus, lateral view. B. Anterior part of body, lateral, slightly ventral view. C. Pleurotergum 7, lateral view. D. Mid-body rings, lateral view. E. Telson, lateral view. Scale bars: A = 1 mm; B–E = 0.5 mm.
Fig. 3 in The mostly cavernicolous millipede genus Stygiiulus Verhoeff, 1929, stat. nov.: taxonomy, distribution and phylogenetic relationships (Diplopoda, Julida, Julidae)
Fig. 3. Stygiiulus fimbriatus (Strasser, 1971) comb. et stat. nov., holotype ♂ (A, B) (MHNG), ♂ (C) (IZB) and ♀ (D) (IBER) from Foran di Landri Cave. A. Leg-pair 1, caudal view. B. Penis, oral/caudal view. C. Left gonopods, mesal view. D. Left vulva, caudal, somewhat mesal view. Abbreviations: ab = anterior branch of solenomere; bs = basal spine; fc = flagellum channel; lt = lateral tube; m = mesomere; mt = median tube; op = operculum; p = promere; pb = posterior branch of solenomere; ph = posterior hump; v = velum. Scale bars = 0.2 mm.
Three new species of Macrostomum (Platyhelminthes, Macrostomorpha), with notes on taxonomy and phylogenetics
<p>The deposited folders contain image material of free-living flatworm specimens. These data support the following publication: Shi Y, Zeng Z, Wang J, Zhang S, Deng L, Wang A (2022) Three new species of <em>Macrostomum</em> (Platyhelminthes, Macrostomorpha) from China and Australia, with notes on taxonomy and phylogenetics. ZooKeys 1099: 1-28. <a href="https://doi.org/10.3897/zookeys.1099.72964">https://doi.org/10.3897/zookeys.1099.72964</a></p> <p>For more information about these specimens see also https://macrostomorpha.myspecies.info</p>
Figure 2 in Taxonomy And Phylogenetics Of The Peromyscus Maniculatus Species Group
Figure 2. Maximum parsimony tree derived from sequence variation (ND3/ND4/ND4L) for the northeastern, central and western samples of Peromyscus maniculatus and reference sequences for P. sejugis, P. gambelii, P. keeni, P. polionotus, P. melanotis, and P. leucopus. Numbers associated with the branches are maximum parsimony bootstrap values and Bayesian posterior probabilities. Locality and GenBank references are given in the Materials and Methods.
FIGURE 3 in Anatomy, taxonomy and phylogenetic relationships of Prestosuchus chiniquensis (Archosauria: Pseudosuchia) from the original collection of von Huene, Middle-Late Triassic of southern Brazil
FIGURE 3. Life reconstruction (1) and preserved bones (2) of Prestosuchus chiniquensis. In red the holotype material and in white the referred material known. Drawn by Jorge Gonzales..
FIGURE 1 in Anatomy, taxonomy and phylogenetic relationships of Prestosuchus chiniquensis (Archosauria: Pseudosuchia) from the original collection of von Huene, Middle-Late Triassic of southern Brazil
FIGURE 1. Map of Brazil, showing the location of the Prestosuchus chiniquensis-bearing site as indicated by von Huene (1938) within the state of Rio Grande do Sul. Map modified from Reichel et al. (2009).
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.