Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
2
datasets available to search
ShareScore release 0.9.0
Dataset results
2 results for “phylogroup”
Mash-based analyses of E. coli genomes reveal 14 distinct phylogroups
<p>To replicate this study the scripts should be ran in the following order. It is expected that you download and unzip the Data.zip file and replace the variable `input_root_folder` in all scripts with the complete file path of the folder where the unzipped Data folder is. </p> <p>Step 1: Run dataset_creation_filtering_and_stat_filtering.py</p> <p>Step 2: Run heatmaps_meoids_newick_pcoa.R (Produces Figure 1 and Figure 3b)</p> <p>Step 3: Run dataset_analysis.py</p> <p>Step 4: Run SRA_heatmap_plots.py (Produces Figure 2c)</p> <p>Step 5: Run Figure_3a.R (Produces Figure 3a)</p> <p>Step 6: Run pangenome_plot_MS.py (Produces Figure 3c)</p> <p> </p> <p> </p>
Supporting data for: Population genetic structure and phylogeography of Yersinia enterocolitica phylogroup PG3 (bioserotype 4/O:3)
<p>Data supporting the manuscript "Population genetic structure and phylogeography of <em>Yersinia enterocolitica</em> phylogroup PG3 (bioserotype 4/O:3)", currently under review.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.