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Dataset results
22 results for “pili”
Bauskas pilskalns ar mūra pili (ortofoto)
Bauskas pilskalns ar mūra pili. 3D modelis ar ortofoto pārklājumu. Koordinātas: 56.40359, 24.16837 https://www.latvijas-pilskalni.lv/bauskas-pilskalns/ Source: Objaverse 1.0 / Sketchfab
Interactions between pili affect the outcome of bacterial competition driven by the type VI secretion system
<div> <div> <div> <div> <div> <p>This dataset accompanies the publication "Interactions between pili affect the outcome of bacterial competition driven by the type VI secretion system" (Otto <em>et al., </em>2024). It encompasses the raw data for all graphs, <em>p</em> values, and growth rates associated with the study.</p> </div> </div> </div> </div> </div>
PlzR regulates type IV pili assembly in Pseudomonas aeruginosa via PilZ binding - ColabFold models
<p>This dataset contains the ColabFold models from the article 'PlzR regulates type IV pili assembly in <em>Pseudomonas aeruginosa</em> via PilZ binding' by Hendrix, H. <em>et al</em> (Nat. Comm., doi: <span><a href="https://doi.org/10.1038/s41467-024-52732-5" target="_blank" rel="noopener">10.1038/s41467-024-52732-5</a></span>).</p> <p>The dataset consists of two zips (a_PlzR_PilZ_models.zip, b_PlzR_PilZ_PilB_models.zip), which contain the direct output of the different ColabFold runs for the PlzR:PilZ protein complex, and the PlzR:PilZ:PilB protein complex, respectively. </p> <p>All models were predicted using ColabFold's AlphaFold2_mmseqs2 v1.2 notebook. For PlzR:PilZ models, models were generated with relaxation and templates enabled and 3, 6 and 48 recycles (folders PA2560_PilZ_auto_rec3_AMBER_templ_4e025.result, PA2560_PilZ_auto_rec6_AMBER_templ_4e025.result and PA2560_PilZ_auto_rec48_AMBER_templ_4e025.result, respectively). For PlzR:PilZ:PilB models, models were generated with templates enabled and 3 recycles (folder PA2560_PilZ_PilB_auto_rec3_templ_6ea29.result). For PlzR:PilZ:PilB models with only the first 200 amino acids of PilB modeled, models were generated with relaxation and templates enabled and 3 and 6 recycles (folders PA2560_PilZ_PilB200_auto_rec3_AMBER_templ_cd74d.result and PA2560_PilZ_PilB200_auto_rec6_AMBER_templ_cd74d.result, respectively).</p>
Assembly of wild type and mutant variants of Enterohemorrhagic type IVa pili
<p>To analyse pilus assembly, bacteria of <em>E. coli</em> strain BW25113 F’<em>lacI</em><sup>Q</sup> were transformed with plasmid pMS41 encoding the EHEC pilus assembly genes and pCHAP8565 or its mutant derivatives encoding PpdD variants (Luna Rico et al. 2019). Bacteria were cultured for 48-72 hours on M9 minimal agar plates (Miller 1972) containing carbenicillin (100 mg.mL-1) and chloramphenicol (25 mg.mL-1). Bacteria were harvested and resuspended in LB medium at OD<sub>600nm</sub> of 1. The suspension was vortexed vigorously for 1 min to detach pili from bacteria. Bacteria were pelleted by 5-min centrifugation at 16000 g at 4°C and resuspended in SDS sample buffer at a concentration of 10 OD<sub>600nm</sub> per 1 mL. The supernatant containing pili was subjected to another round of centrifugation for 10 min. Pili were precipitated with 10% tri-chloroacetic acid on ice for 30 min and pelleted by a 30-min centrifugation at 16000g at 4°C. Pili pellets were washed twice with ice-cold acetone, air-dried and resuspended in SDS-sample buffer at a concentration equivalent to that of the bacteria. The equivalent volumes (5 ul) of each fraction were analysed by denaturing SDS polyacrylamide gel electrophoresis (SDS-PAGE) on 10% polyacrylamide Tris-Tricine gels (Schägger and Von Jagow 1987). Proteins were transferred on nitrocellulose by Western blot and probed with anti-PpdD antibodies and secondary anti-rabbit antibodies coupled to HRP as described (Luna Rico et al. 2019). The fluorescent signal was recorded with a Typhoon FLA-9000 scanner (GE).</p>
To Test the Effectiveness and Implementation Approach of a 3-month PILI Pasifika Program Lifestyle Program With Components of Social Determinants of Health Activities in Real-world Settings (Clinical
ClinicalTrials.gov study NCT07387393. IPD Sharing: Not stated. Countries: 1. Publications: 0.
PILI 'Ohana Project: Partnerships to Overcome Obesity Disparities in Hawaii (3-Year Pilot)
ClinicalTrials.gov study NCT01042886. IPD Sharing: Not stated. Countries: 1. Publications: 3.
Peau o le Vasa: Analysis of the Efficacy and Feasibility of the PILI Lifestyle Program (PLP) + Social Determinants of Health (SDOH) Intervention and Adaptation of SDOH Measures Pilot Study
ClinicalTrials.gov study NCT06471595. IPD Sharing: Not stated. Countries: 1. Publications: 34.
Type IV pili promote early biofilm formation by Clostridium difficile
GEO Series GSE69001. Clostridioides difficile R20291. 9 samples. Type: Expression profiling by high throughput sequencing.
Type IV pili and TLR2 dependent endocytosis of episymbiotic Saccharibacteria attenuates immunoactivation
GEO Series GSE296366. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Expression of Adhesive Pili and the Collagen-Binding Adhesin Ace Is Activated by ArgR Family Transcription Factors in Enterococcus faecalis.
GEO Series GSE112936. Enterococcus faecalis. 12 samples. Type: Expression profiling by high throughput sequencing.
PILI 'Āina Household
ClinicalTrials.gov study NCT06526273. IPD Sharing: NO. Countries: 1. Publications: 0.
PILI at Work a 5-Year Controlled Intervention Trial: Testing DVD Versus Group Delivery of a Weight-Loss Maintenance Intervention in Native Hawaiian- Serving Worksites
ClinicalTrials.gov study NCT01652989. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Partnerships to Improve Lifestyle Interventions (PILI) 'Ohana Dissemination Project Partners in Care
ClinicalTrials.gov study NCT02320344. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Lacticaseibacillus Rhamnosus GG Pili Study
ClinicalTrials.gov study NCT05461443. IPD Sharing: NO. Countries: 1. Publications: 0.
Partnerships to Improve Lifestyle Interventions (PILI) 'Ohana Dissemination Project
ClinicalTrials.gov study NCT02320331. IPD Sharing: Not stated. Countries: 1. Publications: 0.
The phage-encoded PIT4 protein impacts the Pseudomonas aeruginosa type IV pili by affecting different two-component systems
GEO Series GSE230851. Pseudomonas aeruginosa. 12 samples. Type: Expression profiling by high throughput sequencing.
Large-scale differences in gene expression, including genes encoding type IV pili-associated proteins, are seen when Clostridium perfringens is grown in liquid or on surfaces
GEO Series GSE99224. Clostridium perfringens. 12 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Role of σ54 in the regulation of genes involved in biogenesis of type I and type IV pili in Xylella fastidiosa
GEO Series GSE8097. Xylella fastidiosa. 6 samples. Type: Expression profiling by array.
Going Wireless: Fe(III) Oxide Reduction without Pili in Geobacter sulfurreducens Strain JS-1
GEO Series GSE47868. Geobacter sulfurreducens KN400. 8 samples. Type: Expression profiling by array.
Sympathetic nerves and arrector pili muscles form a dual component niche to regulate hair follicle stem cells
GEO Series GSE130240. Mus musculus. 5 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.