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Lizard pitfall trap data from 11 NPP study locations at the Jornada Basin LTER site, 1989-2006
This data package contains data on lizards sampled by pitfall traps located at 11 consumer plots at Jornada Basin LTER site from 1989-2006. The objective of this study is to observe how shifts in vegetation resulting from desertification processes in the Chihuahaun desert have changed the spatial and temporal availability of resources for consumers. Desertification changes in the Jornada Basin include changes from grass to shrub dominated communities and major soil changes. If grassland systems respond to rainfall without significant lags, but shrub systems do not, then consumer species should reflect these differences. In addition, shifts from grassland to shrubland results in greater structural heterogeneity of the habitats. We hypothesized that consumer populations, diversity, and densities of some consumers will be higher in grasslands than in shrublands and will be related to the NPP of the sites. Lizards were captured in pitfall traps at the 11 LTER II/III consumer plots (a subset of NPP plots) quarterly for 2 weeks per quarter. Variables measured include species, sex, recapture status, snout-vent length, total length, weight, and whether tail is broken or whole. This study is complete.
SGS-LTER Long-Term Montioring Project: Arthropod Pitfall Trapping on Small Mammal Trapping Webs on the Central Plains Experimental Range, Nunn, Colorado, USA 1998-2006, ARS Study Number 118 (Reformatted to the ecocomDP Design Pattern)
This data package is formatted as an ecocomDP (Ecological Community Data Pattern). For more information on ecocomDP see https://github.com/EDIorg/ecocomDP. This Level 1 data package was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-sgs/134/17. The abstract below was extracted from the Level 0 data package and is included for context: This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83450. With the exception of heteromyids, eg kangaroo rats and pocket mice, most small rodents in shortgrass steppe are omnivorous. Depending on season, arthropods (insects and arachnids) make up 40-85% of the diet of grasshopper mice and thirteen-lined ground squirrels, the most widespread rodents in northern shortgrass steppe. Small mammals are among the most important predators of ground-dwelling macroarthropods and herbivorous insects provide a direct resource link between weather and plant production. Understanding temporal variability in the abundance of arthropods is central to determining the mechanisms that drive small rodent populations. At present, there are no long-term studies of arthropods in shortgrass steppe, despite the important role that these taxa play in grassland food w
Arthropod pitfall trap data from 12 NPP study locations at the Jornada Basin LTER site, 1996-2001
This data package contains counts and taxonomic identification of arthropods sampled by pitfall traps at the Jornada Basin LTER site from 1996-2001. The objective of this study is to observe how shifts in vegetation resulting from desertification processes in the Chihuahaun desert have changed the spatial and temporal availability of resources for consumers. Desertification changes in the Jornada Basin include changes from grass to shrub dominated communities and major soil changes. If grassland systems respond to rainfall without significant lags, but shrub systems do not, then consumer species should reflect these differences. In addition, shifts from grassland to shrubland results in greater structural heterogeneity of the habitats. We hypothesized that consumer populations, diversity, and densities of some consumers will be higher in grasslands than in shrublands and will be related to the NPP of the sites. Arthropods were captured in pitfall traps at LTER III consumer plots (a subset of NPP plots) at 2 month intervals. Data collected includes number of individuals, order, family, genus, and species. This study is complete. Earlier arthropod data collected using a different study design are in package knb-lter-jrn.210008002.
Arthropod pitfall trap data from 9 NPP study locations at the Jornada Basin LTER site, 1988-1994
This data package contains counts and taxonomic identification of arthropods sampled by pitfall traps at the Jornada Basin LTER site from 1988-1994. The objective of this study is to observe how shifts in vegetation resulting from desertification processes in the Chihuahaun desert have changed the spatial and temporal availability of resources for consumers. Desertification changes in the Jornada Basin include changes from grass to shrub dominated communities and major soil changes. If grassland systems respond to rainfall without significant lags, but shrub systems do not, then consumer species should reflect these differences. In addition, shifts from grassland to shrubland results in greater structural heterogeneity of the habitats. We hypothesized that consumer populations, diversity, and densities of some consumers will be higher in grasslands than in shrublands and will be related to the NPP of the sites. Arthropods were captured in pitfall traps at 9 of the LTER II/III consumer plots (a subset of NPP plots) a few times per year. Data collected includes number of individuals, order, family, genus, and species. This study is complete. Later arthropod data collected using a different study design are in package knb-lter-jrn.210008001.
Raw data supporting Identifying invertebrates from pitfall, flight interception traps and hand collecting
<p>Raw data supporting identifying invertebrates from pitfall, flight interception traps and hand collecting: comparing metabarcoding with traditional methods.</p> <p>Two step PCRs were performed on each sample replicate using modified primers mICOIintF and jgHCO2198 followed by the Nextera XT index kit v2 Set A (Illumina).</p> <p>The pool was loaded onto an illumina MiSeq using a MiSeq Reagent Kit v2 500 cycle kit (Illumina), with 10% Phi-X to generate 250-bp paired-end reads.</p>
Araneae isotope analysis in pitfall traps in sub project 7 in KiLi project
<p><span>Isotope analysis was conducted by Friederike Gerschlauer, together with Gustavo Seiz and Ralf Kiese. The Spiders were sorted, measured and prepared for analysis by Michael Haas for his master thesis.</span></p> <p><span>The KiLi project (2010-2018) is a German Science Foundation (DFG) funded research unit (DFG research unit FOR1246) that focuses on biodiversity and ecosystem processes along altitudinal and disturbance gradients on Mt. Kilimanjaro (Tanzania, Africa), capitalizing on its world-wide unique range of climatic and vegetation zones. The research unit comprises 2 central projects and 7 subprojects from various disciplines. On a total of 60 study sites in both natural and human-disturbed ecosystems biodiversity (e.g. plants, soil arthropods, ants, bees, frogs, lizards, bats, birds), related ecosystem processes (decomposition, seed dispersal, pollination, herbivory, predation), and biogeochemical processes and properties of ecosystems (climate, soil properties and nutrient status, regulation of water and carbon fluxes, trace gas emissions, primary productivity, functional diversity) are analyzed.</span></p>
Araneae morphospecies in pitfall traps in sub project 7 in KiLi project
<p>Morphospecies of reasonable quality, but not checked by a taxonomist. identification at family level should hold.</p> <p>We sampled arthropod assemblages in disturbed and undisturbed vegetation types along an elevational gradient of 860–4550 m asl on the southern slopes of Mt. Kilimanjaro, Tanzania. On each site, ten pitfall traps were evenly spaced along two 50 m transects, with a distance of 10 m between individual traps and 20 m between transects. Pitfall traps were filled with 100–200 ml of a mixture of ethylene glycol and water (1:1 vol/vol) with a drop of liquid soap to break surface tension. Traps were exposed for 7 days each during two to five sampling events in both the dry and wet seasons between May 2011 and October 2012. As the number of individuals collected in ten traps was very high, we had to confine the sorting and subsequent analysis to sub-sets of at least three traps per sampling site and sampling event. Unfortunately, we had to find out later that the ethylen glycol procured locally was actually a mixture of ethylen glycol and 2-ethoxyethanol, which is a strong oxidizing chemical. Therefore, any sequencing of specimen caught in pitfall traps was impossible.</p> <p>Haas, Michael. 2014. Master thesis. The influence of elevation on community composition and trophic position of spiders. University of Marburg</p> <p>The KiLi project (2010-2018) is a German Science Foundation (DFG) funded research unit (DFG research unit FOR1246) that focuses on biodiversity and ecosystem processes along altitudinal and disturbance gradients on Mt. Kilimanjaro (Tanzania, Africa), capitalizing on its world-wide unique range of climatic and vegetation zones. The research unit comprises 2 central projects and 7 subprojects from various disciplines. On a total of 60 study sites in both natural and human-disturbed ecosystems biodiversity (e.g. plants, soil arthropods, ants, bees, frogs, lizards, bats, birds), related ecosystem processes (decomposition, seed dispersal, pollination, herbivory, predation), and biogeochemical processes and properties of ecosystems (climate, soil properties and nutrient status, regulation of water and carbon fluxes, trace gas emissions, primary productivity, functional diversity) are analyzed.</p>
Coleoptera morphospecies abundance in pitfall traps in sub project 7 in KiLi project
<p>Carabidae identified to species, and other Coleoptera identified to morphospecies by Peter Schüle, Tenebrionidae identified by Dr. Wolfgang Schawaller.</p> <p>Assemblages of ground-dwelling beetles were sampled with pitfall traps8. Ten pitfall traps were evenly spaced along two 50 m transects, with a distance of 10 m between individual traps and 20 m between transects. Pitfall traps were filled with 100-200 ml solution of equal parts of ethylenglycol and water with a drop of liquid soap to break the surface tension. The traps were placed on the sampling sites in June 2012 and collected after seven days. As the number of individuals collected in ten traps was very high and all individuals could not be analyzed in time, for the present analysis, we processed only three traps from each study site. Ground-dwelling beetles were sorted to morphospecies level, and where possible, to species.</p> <div> <p>The KiLi project (2010-2018) is a German Science Foundation (DFG) funded research unit (DFG research unit FOR1246) that focuses on biodiversity and ecosystem processes along altitudinal and disturbance gradients on Mt. Kilimanjaro (Tanzania, Africa), capitalizing on its world-wide unique range of climatic and vegetation zones. The research unit comprises 2 central projects and 7 subprojects from various disciplines. On a total of 60 study sites in both natural and human-disturbed ecosystems biodiversity (e.g. plants, soil arthropods, ants, bees, frogs, lizards, bats, birds), related ecosystem processes (decomposition, seed dispersal, pollination, herbivory, predation), and biogeochemical processes and properties of ecosystems (climate, soil properties and nutrient status, regulation of water and carbon fluxes, trace gas emissions, primary productivity, functional diversity) are analyzed.</p> </div>
Pitfall traps Collembola morphospecies abundance in sub project 7 in KiLi project
<p>Abundances of Collembola, resolution morphospecies. See "<a href="../doi/10.5281/zenodo.13829067">Collembola morphospecies in sub project 7 in KiLi project</a>" for actual species names.</p> <p>Assemblages of springtails were sampled with pitfall traps. Ten pitfall traps were evenly spaced along two 50 m transects, with a distance of 10 m between individual traps and 20 m between transects. Pitfall traps were filled with 100-200 ml solution of equal parts of ethylenglycol and water with a drop of liquid soap to break the surface tension. The traps were placed on the sampling sites in June 2012 and collected after seven days. As the number of individuals collected in ten traps was very high and all individuals could not be analyzed in time, for the present analysis, we processed only three traps from each study site. Ground-dwelling beetles were sorted to morphospecies level, and where possible, to species.</p> <p>The KiLi project (2010-2018) is a German Science Foundation (DFG) funded research unit (DFG research unit FOR1246) that focuses on biodiversity and ecosystem processes along altitudinal and disturbance gradients on Mt. Kilimanjaro (Tanzania, Africa), capitalizing on its world-wide unique range of climatic and vegetation zones. The research unit comprises 2 central projects and 7 subprojects from various disciplines. On a total of 60 study sites in both natural and human-disturbed ecosystems biodiversity (e.g. plants, soil arthropods, ants, bees, frogs, lizards, bats, birds), related ecosystem processes (decomposition, seed dispersal, pollination, herbivory, predation), and biogeochemical processes and properties of ecosystems (climate, soil properties and nutrient status, regulation of water and carbon fluxes, trace gas emissions, primary productivity, functional diversity) are analyzed.</p>
Araneae families abundance in pitfall traps in sub project 7 in KiLi project
<p>Abundances of spiders, resolution at least family level, FER2 was not sampled.</p> <p>We sampled arthropod assemblages in disturbed and undisturbed vegetation types along an elevational gradient of 860–4550 m asl on the southern slopes of Mt. Kilimanjaro, Tanzania. On each site, ten pitfall traps were evenly spaced along two 50 m transects, with a distance of 10 m between individual traps and 20 m between transects. Pitfall traps were filled with 100–200 ml of a mixture of ethylene glycol and water (1:1 vol/vol) with a drop of liquid soap to break surface tension. Traps were exposed for 7 days each during two to five sampling events in both the dry and wet seasons between May 2011 and October 2012. As the number of individuals collected in ten traps was very high, we had to confine the sorting and subsequent analysis to sub-sets of at least three traps per sampling site and sampling event. Unfortunately, we had to find out later that the ethylen glycol procured locally was actually a mixture of ethylen glycol and 2-ethoxyethanol, which is a strong oxidizing chemical. Therefore, any sequencing of specimen caught in pitfall traps was impossible.</p> <p>Haas, Michael. 2014. Master thesis. The influence of elevation on community composition and trophic position of spiders. University of Marburg</p> <p>The KiLi project (2010-2018) is a German Science Foundation (DFG) funded research unit (DFG research unit FOR1246) that focuses on biodiversity and ecosystem processes along altitudinal and disturbance gradients on Mt. Kilimanjaro (Tanzania, Africa), capitalizing on its world-wide unique range of climatic and vegetation zones. The research unit comprises 2 central projects and 7 subprojects from various disciplines. On a total of 60 study sites in both natural and human-disturbed ecosystems biodiversity (e.g. plants, soil arthropods, ants, bees, frogs, lizards, bats, birds), related ecosystem processes (decomposition, seed dispersal, pollination, herbivory, predation), and biogeochemical processes and properties of ecosystems (climate, soil properties and nutrient status, regulation of water and carbon fluxes, trace gas emissions, primary productivity, functional diversity) are analyzed.</p>
Coleoptera Carabidae body size in pitfall traps in sub project 7 in KiLi project
<p>There are still some unsolved qustions regarding plot level information, but means per Carabid species are available. Abacetus spec., Afrotarus kilimanus, Neosipelus sp. 1 and sp 2., Tyronia lateralis and Tyronia spec. nov. - measurements are available, but without information for the plot.</p> <p>Assemblages of ground-dwelling beetles were sampled with pitfall traps8. Ten pitfall traps were evenly spaced along two 50 m transects, with a distance of 10 m between individual traps and 20 m between transects. Pitfall traps were filled with 100-200 ml solution of equal parts of ethylenglycol and water with a drop of liquid soap to break the surface tension. The traps were placed on the sampling sites in June 2012 and collected after seven days. As the number of individuals collected in ten traps was very high and all individuals could not be analyzed in time, for the present analysis, we processed only three traps from each study site. Ground-dwelling beetles were sorted to morphospecies level, and where possible, to species.</p> <p>The KiLi project (2010-2018) is a German Science Foundation (DFG) funded research unit (DFG research unit FOR1246) that focuses on biodiversity and ecosystem processes along altitudinal and disturbance gradients on Mt. Kilimanjaro (Tanzania, Africa), capitalizing on its world-wide unique range of climatic and vegetation zones. The research unit comprises 2 central projects and 7 subprojects from various disciplines. On a total of 60 study sites in both natural and human-disturbed ecosystems biodiversity (e.g. plants, soil arthropods, ants, bees, frogs, lizards, bats, birds), related ecosystem processes (decomposition, seed dispersal, pollination, herbivory, predation), and biogeochemical processes and properties of ecosystems (climate, soil properties and nutrient status, regulation of water and carbon fluxes, trace gas emissions, primary productivity, functional diversity) are analyzed.</p>
Identified invertebrate bycatch from beetle pitfall traps at SJER and SOAP, 2017 - 2018 (repackaging of occurrences published by the NEON Biorepository Data Portal)
California permit requirements necessitated a more thorough identification of beetle pitfall samples than is typical of this protocol. These invertebrate bycatch samples therefore have occurrence associations that indicate their contents in both the NEON Biorepository and main NEON data portals. See NEON prototype dataset 9bc959c-148b-aaad-aa35-2d0805327428 available here.
SGS-LTER Long-Term Montioring Project: Arthropod Pitfall Trapping on Small Mammal Trapping Webs on the Central Plains Experimental Range, Nunn, Colorado, USA 1998-2006, ARS Study Number 118 (Reformatted to a Darwin Core Archive)
This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/edi/328/2, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-sgs/134/17. The abstract below was extracted from the Level 0 data package and is included for context: This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83450. With the exception of heteromyids, eg kangaroo rats and pocket mice, most small rodents in shortgrass steppe are omnivorous. Depending on season, arthropods (insects and arachnids) make up 40-85% of the diet of grasshopper mice and thirteen-lined ground squirrels, the most widespread rodents in northern shortgrass steppe. Small mammals are among the most important predators of ground-dwelling macroarthropods and herbivorous insects provide a direct resource link between weather and plant production. Understanding temporal variability in the abundance of arthropods is central to determining the mechanisms that drive small rodent populations. At present, there are no long-
Abundance of major taxonomic groups of invertebrates (arthropods and gastropods) collected with pitfall traps at four sites near Toolik Field Station Arctic LTER, Alaska in the summer of 2010.
Invertebrates (spiders, insects and slugs) were collected weekly using pitfall traps at four sites near the Arctic LTER at Toolik Field Station, Alaska. Traps were placed along transects in shrub (shrub-dominant) and open (tussock-dominant) tundra sites. Pitfall traps were placed for 48-hour intervals once per week from early June until mid-July 2010. Collected invertebrates were counted and identified to class (all invertebrates), order or family (for some of the most common families collected).
Arthropod pitfall trap biomass captured (weekly) and pitfall biomass model predictions (daily) near Toolik Field Station, Alaska, summers 2012-2016.
This data set contains information about the per pitfall trap arthropod biomass captured (or modeled using GAM modelling approaches) near Toolik Field Station from 2012 to 2016 under National Science Foundation (NSF) Office of Polar Programs ARC 0908444 (to Laura Gough), ARC 0908602 (to Natalie Boelman), and ARC 0909133 (to John Wingfield). It is associated with publication DOI: 10.1111/jav.01712.
SBC LTER: BEACH: Talitrid amphipod (Megalorchestia spp.) mesocosm and pitfall trapping for surface activity on spring and neap tides
These data describe the surface activity of talitrid amphipod species (Megalorchestia spp.), and unidentified juveniles, on a spring tide and a neap tide during July and August 2017. The data tables include (1) the mean number and standard deviation of surface active individuals of each species each hour for a 24 hour period on a spring tide and on a neap tide in mesocosms, and (2) the count of each species and unidentified juveniles from pitfall trap samples collected every 2 hours on 4 replicate transects on a spring tide and on a neap tide. This dataset is to support the journal article: Emery, KA, VR Kramer, NK Schooler, KM Michaud, JR Madden, DM Hubbard, RJ Miller, JE Dugan. 2021. Habitat partitioning by mobile intertidal invertebrates of sandy beaches shifts with the tides. Ecosphere.
Figures 7–8. Big Bend dung beetles and pitfall trap design. 7 in The dung beetle fauna of the Big Bend region of Texas (Coleoptera: Scarabaeidae: Scarabaeinae)
Figures 7–8. Big Bend dung beetles and pitfall trap design. 7) Big Bend species arranged left to right in order of descending size (scale bar = 5mm): Above – Phanaeus texensis, Copris arizonensis, Canthon blumei, C. imitator; Below – Digitonthophagus gazella, Onthophagus brevifrons, Euoniticellus intermedius, Canthon praticola, C. mixtus, O. browni, O. velutinus, O. knausi. 8) Pitfall trap design: [A] active trap with cover (anchored with rocks); [B] cover removed to expose suspended bait and catch; [C] plant nursery container from likes of which trap cover fashioned (foreground); [D] trap receptacle, wire bait hanger and bait cup.
Figure 5 in Does your preservative preserve? A comparison of the efficacy of some pitfall trap solutions in preserving the internal reproductive organs of dung beetles
Figure 5. Pitfall trap with protective caging and cover placed on-top of a manually constructed soil mound so as to prevent interference from mammals and dilution and/or overspilling from precipitation and surface runoff.
Figure 2. L in Does your preservative preserve? A comparison of the efficacy of some pitfall trap solutions in preserving the internal reproductive organs of dung beetles
Figure 2. L. militaris (female) after 28 days of submergence in 4% PBF showing the well preserved ovary and oocytes.
Figure 3 in Does your preservative preserve? A comparison of the efficacy of some pitfall trap solutions in preserving the internal reproductive organs of dung beetles
Figure 3. Evaporation rates of the eight preservatives in the riparian vine thicket environment. Water is also shown for comparison. The dotted line represents the critical volume. PG = propylene glycol, w vinegar = white vinegar.
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